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Volumn 9, Issue 1, 2012, Pages

Electric oscillation and coupling of chromatin regulate chromosome packaging and transcription in eukaryotic cells

Author keywords

Chromosome packaging; CTCF; Electromagnetic field; HOX; Intron; Long non coding RNA; Oscillation cluster

Indexed keywords

EUKARYOTA;

EID: 84863184842     PISSN: None     EISSN: 17424682     Source Type: Journal    
DOI: 10.1186/1742-4682-9-27     Document Type: Review
Times cited : (16)

References (43)
  • 2
    • 0027519363 scopus 로고
    • Coupled oscillators and biological synchronization
    • 10.1038/scientificamerican1293-102 8266056
    • Coupled oscillators and biological synchronization. Strogatz SH, Stewart I, Sci Am 1993 269 102 109 10.1038/scientificamerican1293-102 8266056
    • (1993) Sci Am , vol.269 , pp. 102-109
    • Strogatz, S.H.1    Stewart, I.2
  • 3
    • 14744295912 scopus 로고    scopus 로고
    • Frequency clustering of coupled phase oscillators on small-world networks
    • 10.1140/epjb/e2005-00046-2
    • Frequency clustering of coupled phase oscillators on small-world networks. Morelli LG, Cerdeira H, Zanette DH, Eur Phys J B 2005 43 243 250 10.1140/epjb/e2005-00046-2
    • (2005) Eur Phys J B , vol.43 , pp. 243-250
    • Morelli, L.G.1    Cerdeira, H.2    Zanette, D.H.3
  • 4
    • 67149125437 scopus 로고    scopus 로고
    • Clustering in a network of non-identical and mutually interacting agents
    • 10.1098/rspa.2008.0259
    • Clustering in a network of non-identical and mutually interacting agents. De Smet F, Aeyels D, Proc R Soc A 2009 465 745 768 10.1098/rspa.2008.0259
    • (2009) Proc R Soc A , vol.465 , pp. 745-768
    • De Smet, F.1    Aeyels, D.2
  • 5
    • 77950865970 scopus 로고    scopus 로고
    • Emergence and evolution of multiple clusters of attracting agents
    • 10.1016/j.physd.2010.02.012
    • Emergence and evolution of multiple clusters of attracting agents. Aeyels D, De Smet F, Physica D 2010 239 1026 1037 10.1016/j.physd.2010.02.012
    • (2010) Physica D , vol.239 , pp. 1026-1037
    • Aeyels, D.1    De Smet, F.2
  • 6
    • 80054702528 scopus 로고    scopus 로고
    • Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus
    • 10.1016/j.cell.2011.08.049 21982154
    • Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus. Guo C, Gerasimova T, Hao H, Ivanova I, Chakraborty T, Selimyan R, Oltz EM, Sen R, Cell 2011 147 332 343 10.1016/j.cell.2011.08.049 21982154
    • (2011) Cell , vol.147 , pp. 332-343
    • Guo, C.1    Gerasimova, T.2    Hao, H.3    Ivanova, I.4    Chakraborty, T.5    Selimyan, R.6    Oltz, E.M.7    Sen, R.8
  • 7
    • 0018209767 scopus 로고
    • Effects of high frequency electric fields on mammalian chromosomes in vitro
    • Effects of high frequency electric fields on mammalian chromosomes in vitro. Andrews MJ, McClure JA, J Biol Phys 1979 6 1-2 69 86
    • (1979) J Biol Phys , vol.6 , Issue.1-2 , pp. 69-86
    • Andrews, M.J.1    McClure, J.A.2
  • 8
    • 0018134857 scopus 로고
    • Transient electric dichroism studies of nucleosomal particles
    • 10.1021/bi00614a026 718855
    • Transient electric dichroism studies of nucleosomal particles. Crothers DM, Dattagupta N, Hogan M, Klevan L, Lee KS, Biochemistry 1978 17 21 4525 4533 10.1021/bi00614a026 718855
    • (1978) Biochemistry , vol.17 , Issue.21 , pp. 4525-4533
    • Crothers, D.M.1    Dattagupta, N.2    Hogan, M.3    Klevan, L.4    Lee, K.S.5
  • 9
    • 20444377701 scopus 로고    scopus 로고
    • Electrostatic mechanism of nucleosomal array folding revealed by computer simulation
    • 10.1073/pnas.0408867102 15919827
    • Electrostatic mechanism of nucleosomal array folding revealed by computer simulation. Sun J, Zhang Q, Schlick T, Proc Natl Acad Sci U S A 2005 102 23 8180 8185 10.1073/pnas.0408867102 15919827
    • (2005) Proc Natl Acad Sci U S A , vol.102 , Issue.23 , pp. 8180-8185
    • Sun, J.1    Zhang, Q.2    Schlick, T.3
  • 10
    • 21844436803 scopus 로고    scopus 로고
    • X-ray structure of a tetranucleosome and its implications for the chromatin fibre
    • 10.1038/nature03686 16001076
    • X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Schalch T, Duda S, Sargent DF, Richmond TJ, Nature 2005 436 138 141 10.1038/nature03686 16001076
    • (2005) Nature , vol.436 , pp. 138-141
    • Schalch, T.1    Duda, S.2    Sargent, D.F.3    Richmond, T.J.4
  • 11
    • 69449098842 scopus 로고    scopus 로고
    • Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions
    • 10.1073/pnas.0903280106 19651606
    • Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions. Grigoryeva SA, Aryab G, Corrella S, Woodcock C, Schlickd T, PNAS 2009 106 32 13317 13322 10.1073/pnas.0903280106 19651606
    • (2009) PNAS , vol.106 , Issue.32 , pp. 13317-13322
    • Grigoryeva, S.A.1    Aryab, G.2    Corrella, S.3    Woodcock, C.4    Schlickd, T.5
  • 12
    • 77952959522 scopus 로고    scopus 로고
    • Electric field generated by axial longitudinal vibration modes of microtubule
    • Epub 2010 Feb 21; PMID: 20178826 10.1016/j.biosystems.2010.02.007 20178826
    • Electric field generated by axial longitudinal vibration modes of microtubule. Cifra M, Pokorn J, Havelka D, Kucera O, Biosystems 2010 100 2 122 131 Epub 2010 Feb 21; PMID: 20178826 10.1016/j.biosystems.2010.02.007 20178826
    • (2010) Biosystems , vol.100 , Issue.2 , pp. 122-131
    • Cifra, M.1    Pokorn, J.2    Havelka, D.3    Kucera, O.4
  • 13
    • 79960881149 scopus 로고    scopus 로고
    • High-frequency electric field and radiation characteristics of cellular microtubule network
    • 21782830
    • High-frequency electric field and radiation characteristics of cellular microtubule network. Havelka D, Cifra M, Kuera O, Pokorn J, Vrba J, J Theor Biol 2011 286 1 31 40 21782830
    • (2011) J Theor Biol , vol.286 , Issue.1 , pp. 31-40
    • Havelka, D.1    Cifra, M.2    Kuera, O.3    Pokorn, J.4    Vrba, J.5
  • 14
    • 79954414775 scopus 로고    scopus 로고
    • Electromagnetic cellular interactions
    • 10.1016/j.pbiomolbio.2010.07.003 20674588
    • Electromagnetic cellular interactions. Cifra M, Fields JZ, Farhadi A, Prog Biophys Mol Biol 2011 105 3 223 246 10.1016/j.pbiomolbio.2010.07.003 20674588
    • (2011) Prog Biophys Mol Biol , vol.105 , Issue.3 , pp. 223-246
    • Cifra, M.1    Fields, J.Z.2    Farhadi, A.3
  • 15
    • 0141995062 scopus 로고    scopus 로고
    • Chromatin history: Our view from the bridge
    • 14570061
    • Chromatin history: our view from the bridge. Olins DE, Olins AL, Nat Rev Mol Cell Biol 2003 4 809 814 14570061
    • (2003) Nat Rev Mol Cell Biol , vol.4 , pp. 809-814
    • Olins, D.E.1    Olins, A.L.2
  • 16
    • 79959288936 scopus 로고    scopus 로고
    • DNA packaging: Nucleosomes and chromatin
    • DNA packaging: nucleosomes and chromatin. Annunziato A, Nat Educ 2008 1 1
    • (2008) Nat Educ , vol.1 , Issue.1
    • Annunziato, A.1
  • 17
    • 84856747483 scopus 로고    scopus 로고
    • Three-dimensional folding and functional organization principles of the Drosophila genome
    • Epub 2012 Jan 19 10.1016/j.cell.2012.01.010 22265598
    • Three-dimensional folding and functional organization principles of the Drosophila genome. Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G, Cell 2012 148 3 458 472 Epub 2012 Jan 19 10.1016/j.cell.2012.01.010 22265598
    • (2012) Cell , vol.148 , Issue.3 , pp. 458-472
    • Sexton, T.1    Yaffe, E.2    Kenigsberg, E.3    Bantignies, F.4    Leblanc, B.5    Hoichman, M.6    Parrinello, H.7    Tanay, A.8    Cavalli, G.9
  • 18
    • 84862778059 scopus 로고    scopus 로고
    • Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
    • Epub 2012 Feb 16 10.1016/j.cell.2012.02.002 22341456
    • Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. McCord RP, Ho YJ, Lajoie BR, Hildebrand DG, Simon AC, Becker MS, Alt FW, Dekker J, Cell 2012 148 5 908 921 Epub 2012 Feb 16 10.1016/j.cell.2012.02.002 22341456
    • (2012) Cell , vol.148 , Issue.5 , pp. 908-921
    • McCord, R.P.1    Ho, Y.J.2    Lajoie, B.R.3    Hildebrand, D.G.4    Simon, A.C.5    Becker, M.S.6    Alt, F.W.7    Dekker, J.8
  • 19
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • 10.1038/nature11082 22495300
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions. Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B, Nature 2012 485 376 380 10.1038/nature11082 22495300
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 21
    • 80052297694 scopus 로고    scopus 로고
    • Control of embryonic stem cell lineage commitment by core promoter factor, TAF3
    • 10.1016/j.cell.2011.08.005 21884934
    • Control of embryonic stem cell lineage commitment by core promoter factor, TAF3. Liu Z, Scannell DR, Eisen MB, Tjian R, Cell 2011 146 5 720 731 10.1016/j.cell.2011.08.005 21884934
    • (2011) Cell , vol.146 , Issue.5 , pp. 720-731
    • Liu, Z.1    Scannell, D.R.2    Eisen, M.B.3    Tjian, R.4
  • 22
    • 84861964135 scopus 로고    scopus 로고
    • Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
    • 10.1016/j.cell.2012.03.051 22682246
    • Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Deng W, Lee J, Wang H, Miller J, Reik A, Gregory PD, Dean A, Blobel GA, Cell 2012 149 6 1233 1244 10.1016/j.cell.2012.03.051 22682246
    • (2012) Cell , vol.149 , Issue.6 , pp. 1233-1244
    • Deng, W.1    Lee, J.2    Wang, H.3    Miller, J.4    Reik, A.5    Gregory, P.D.6    Dean, A.7    Blobel, G.A.8
  • 23
    • 2442695407 scopus 로고    scopus 로고
    • Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription
    • 10.1101/gad.292104 15155579
    • Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription. Chambeyron S, Bickmore WA, Genes Dev 2004 18 1119 1130 10.1101/gad.292104 15155579
    • (2004) Genes Dev , vol.18 , pp. 1119-1130
    • Chambeyron, S.1    Bickmore, W.A.2
  • 24
    • 66749180667 scopus 로고    scopus 로고
    • Epigenetic temporal control of mouse Hox genes in vivo
    • 10.1126/science.1171468 19498168
    • Epigenetic temporal control of mouse Hox genes in vivo. Soshnikova N, Duboule D, Science 2009 324 1320 1323 10.1126/science.1171468 19498168
    • (2009) Science , vol.324 , pp. 1320-1323
    • Soshnikova, N.1    Duboule, D.2
  • 26
    • 79956324593 scopus 로고    scopus 로고
    • Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus
    • 10.1073/pnas.1018279108 21502535
    • Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus. Kim YJ, Cecchini KR, Kim TH, PNAS 2011 108 18 7391 7396 10.1073/pnas.1018279108 21502535
    • (2011) PNAS , vol.108 , Issue.18 , pp. 7391-7396
    • Kim, Y.J.1    Cecchini, K.R.2    Kim, T.H.3
  • 29
    • 53249083943 scopus 로고    scopus 로고
    • The role of specialized transcription factories in chromosome pairing
    • 10.1016/j.bbamcr.2008.07.013 18706455
    • The role of specialized transcription factories in chromosome pairing. Xu M, Cook PR, Biochim Biophys Acta 2008 1783 2155 2160 10.1016/j.bbamcr.2008.07. 013 18706455
    • (2008) Biochim Biophys Acta , vol.1783 , pp. 2155-2160
    • Xu, M.1    Cook, P.R.2
  • 31
    • 84862128143 scopus 로고    scopus 로고
    • Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery
    • 10.1016/j.devcel.2012.03.012 22579222
    • Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery. Brickner DG, Ahmed S, Meldi L, Thompson A, Light W, Young M, Hickman TL, Chu F, Fabre E, Brickner JH, Dev Cell 2012 22 6 1234 1246 10.1016/j.devcel.2012.03.012 22579222
    • (2012) Dev Cell , vol.22 , Issue.6 , pp. 1234-1246
    • Brickner, D.G.1    Ahmed, S.2    Meldi, L.3    Thompson, A.4    Light, W.5    Young, M.6    Hickman, T.L.7    Chu, F.8    Fabre, E.9    Brickner, J.H.10
  • 33
    • 77952212771 scopus 로고    scopus 로고
    • RNA traffic control of chromatin complexes
    • Epub 2010 Mar 31 10.1016/j.gde.2010.03.003 20362426
    • RNA traffic control of chromatin complexes. Koziol MJ, Rinn JL, Curr Opin Genet Dev 2010 20 2 142 148 Epub 2010 Mar 31 10.1016/j.gde.2010.03.003 20362426
    • (2010) Curr Opin Genet Dev , vol.20 , Issue.2 , pp. 142-148
    • Koziol, M.J.1    Rinn, J.L.2
  • 34
    • 33644770293 scopus 로고    scopus 로고
    • RNAi Components Are Required for Nuclear Clustering of Polycomb Group Response Elements
    • 10.1016/j.cell.2006.01.036 16530043
    • RNAi Components Are Required for Nuclear Clustering of Polycomb Group Response Elements. Grimaud C, Bantignies F, Pal-Bhadra M, Ghana P, Bhadra U, Cavalli G, Cell 2006 124 957 971 10.1016/j.cell.2006.01.036 16530043
    • (2006) Cell , vol.124 , pp. 957-971
    • Grimaud, C.1    Bantignies, F.2    Pal-Bhadra, M.3    Ghana, P.4    Bhadra, U.5    Cavalli, G.6
  • 39
    • 80052643394 scopus 로고    scopus 로고
    • Chromosome organization by a nucleoid-associated protein in live bacteria
    • 10.1126/science.1204697 21903814
    • Chromosome organization by a nucleoid-associated protein in live bacteria. Wang W, Li GW, Chen C, Xie XS, Zhuang X, Science 2011 333 6048 1445 1449 10.1126/science.1204697 21903814
    • (2011) Science , vol.333 , Issue.6048 , pp. 1445-1449
    • Wang, W.1    Li, G.W.2    Chen, C.3    Xie, X.S.4    Zhuang, X.5
  • 40
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 10.1016/j.cell.2007.05.009 17512414
    • High-resolution profiling of histone methylations in the human genome. Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K, Cell 2007 129 4 823 837 10.1016/j.cell.2007.05.009 17512414
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 41
    • 77956173475 scopus 로고    scopus 로고
    • Technical aspects of measurement of cellular electric activity
    • 10.1007/s00249-010-0597-8 20306029
    • Technical aspects of measurement of cellular electric activity. Kuera O, Cifra M, Pokorn J, Eur Biophys J 2010 39 10 1465 1470 10.1007/s00249-010-0597-8 20306029
    • (2010) Eur Biophys J , vol.39 , Issue.10 , pp. 1465-1470
    • Kuera, O.1    Cifra, M.2    Pokorn, J.3


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