-
2
-
-
17944380943
-
The Y-family of DNA Polymerases
-
DOI 10.1016/S1097-2765(01)00278-7
-
Ohmori H, Friedberg EC, Fuchs RP, Goodman MF, Hanaoka F, Hinkle D, Kunkel TA, Lawrence CW, Livneh Z, Nohmi T, Prakash L, Prakash S, Todo T, Walker GC, Wang Z, Woodgate R (2001) The Y-family of DNA polymerases. Mol Cell 8:7-8. (Pubitemid 32772900)
-
(2001)
Molecular Cell
, vol.8
, Issue.1
, pp. 7-8
-
-
Ohmori, H.1
Friedberg, E.C.2
Fuchs, R.P.P.3
Goodman, M.F.4
Hanaoka, F.5
Hinkle, D.6
Kunkel, T.A.7
Lawrence, C.W.8
Livneh, Z.9
Nohmi, T.10
Prakash, L.11
Prakash, S.12
Todo, T.13
Walker, G.C.14
Wang, Z.15
Woodgate, R.16
-
3
-
-
27144542782
-
Fidelity of Dpo4: Effect of metal ions, nucleotide selection and pyrophosphorolysis
-
DOI 10.1038/sj.emboj.7600786, PII 7600786
-
Vaisman A, Ling H, Woodgate R, Yang W (2005) Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis. EMBO J 24:2957-2967. (Pubitemid 41486333)
-
(2005)
EMBO Journal
, vol.24
, Issue.17
, pp. 2957-2967
-
-
Vaisman, A.1
Ling, H.2
Woodgate, R.3
Yang, W.4
-
4
-
-
42949164023
-
Structures of DNA Polymerase b with Active-Site Mismatches Suggest a Transient Abasic Site Intermediate during Misincorporation
-
DOI 10.1016/j.molcel.2008.02.025, PII S109727650800172X
-
Batra WK, Beard WA, Shock DD, Pedersen LC, Wilson SH (2008) Structures of DNA polymerase b with activesite mismatches suggest a transient abasic site intermediate during misincorporation. Mol Cell 30:315-324. (Pubitemid 351615312)
-
(2008)
Molecular Cell
, vol.30
, Issue.3
, pp. 315-324
-
-
Batra, V.K.1
Beard, W.A.2
Shock, D.D.3
Pedersen, L.C.4
Wilson, S.H.5
-
5
-
-
79957603036
-
The structure of a high fidelity DNA polymerase bound to mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism
-
Wu EY, Beese LS (2011) The structure of a high fidelity DNA polymerase bound to mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism. J Biol Chem 286: 19758-19767.
-
(2011)
J Biol Chem
, vol.286
, pp. 19758-19767
-
-
Wu, E.Y.1
Beese, L.S.2
-
6
-
-
33748620054
-
Energy analysis of chemistry for correct insertion by DNA polymerase β
-
DOI 10.1073/pnas.0606006103
-
Lin P, Pedersen LC, Batra VK, Beard WA, Wilson SH, Pedersen LG (2006) Energy analysis of chemistry for correct insertion by DNA polymerase β. Proc Natl Acad Sci USA 103:13294-13299. (Pubitemid 44380101)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.36
, pp. 13294-13299
-
-
Lin, P.1
Pedersen, L.C.2
Batra, V.K.3
Beard, W.A.4
Wilson, S.H.5
Pedersen, L.G.6
-
7
-
-
44449088925
-
Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase b
-
DOI 10.1073/pnas.0801257105
-
Lin P, Batra VK, Pedersen LC, Beard WA, Wilson SH, Pedersen LG (2008) Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase b. Proc Natl Acad Sci USA 105:5670-5674. (Pubitemid 351758429)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.15
, pp. 5670-5674
-
-
Lin, P.1
Batra, V.K.2
Pedersen, L.C.3
Beard, W.A.4
Wilson, S.H.5
Pedersen, L.G.6
-
8
-
-
79951677675
-
Variation in mutation rates caused by RB69pol fidelity mutants can be rationalized on the basis of their kinetic behavior and crystal structures
-
Xia S, Wang M, Lee HR, Sinha A, Blaha G, Christian T, Wang J, Konigsberg W (2011) Variation in mutation rates caused by RB69pol fidelity mutants can be rationalized on the basis of their kinetic behavior and crystal structures. J Mol Biol 406:558-570.
-
(2011)
J Mol Biol
, vol.406
, pp. 558-570
-
-
Xia, S.1
Wang, M.2
Lee, H.R.3
Sinha, A.4
Blaha, G.5
Christian, T.6
Wang, J.7
Konigsberg, W.8
-
9
-
-
80054973131
-
Structural insights into complete metal ion coordination from ternary complexes of B family RB69 DNA polymerase
-
Xia S, Wang M, Blaha G, Konigsberg WH, Wang J (2011) Structural insights into complete metal ion coordination from ternary complexes of B family RB69 DNA polymerase. Biochemistry 50:9114-9124.
-
(2011)
Biochemistry
, vol.50
, pp. 9114-9124
-
-
Xia, S.1
Wang, M.2
Blaha, G.3
Konigsberg, W.H.4
Wang, J.5
-
10
-
-
67651218926
-
RB69 DNA polymerase mutants with expanded nascent base-pair-binding pockets are highly efficient but have reduced base selectivity
-
Zhang H, Beckman J, Wang J, Konigsberg W (2009) RB69 DNA polymerase mutants with expanded nascent base-pair-binding pockets are highly efficient but have reduced base selectivity. Biochemistry 48:6940-6950.
-
(2009)
Biochemistry
, vol.48
, pp. 6940-6950
-
-
Zhang, H.1
Beckman, J.2
Wang, J.3
Konigsberg, W.4
-
11
-
-
84962408666
-
Magnesium-cationic Dummy Atom Molecules Enhance Representation of DNA Polymerase β in Molecular Dynamics Simulations: Improved Accuracy in Studies of Structural Features and Mutational Effects
-
DOI 10.1016/j.jmb.2006.10.095, PII S0022283606015221
-
Oelschlaeger P, Klahn M, Beard WA, Wilson SH, Warshel A (2007) Magnesium-cationic dummy atom molecules enhance representation of DNA polymerase β in molecular dynamics simulations: improved accuracy in studies of structural features and mutational effects. J Mol Biol 366:687-701. (Pubitemid 46138101)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.2
, pp. 687-701
-
-
Oelschlaeger, P.1
Klahn, M.2
Beard, W.A.3
Wilson, S.H.4
Warshel, A.5
-
12
-
-
33847724386
-
Increased flexibility enhances misincorporation
-
Perlow-Poehnelt RA, Likhterov I, Wang L, Scicchitano DA, Geacintov NE, Broyde S (2007) Increased flexibility enhances misincorporation. J Biol Chem 282: 1397-1408.
-
(2007)
J Biol Chem
, vol.282
, pp. 1397-1408
-
-
Perlow-Poehnelt, R.A.1
Likhterov, I.2
Wang, L.3
Scicchitano, D.A.4
Geacintov, N.E.5
Broyde, S.6
-
13
-
-
26444470895
-
Mismatch-induced conformational distortions in polymerase β support an induced-fit mechanism for fidelity
-
DOI 10.1021/bi0507682
-
Arora K, Beard WA, Wilson SH, Schlick T (2005) Mismatch- induced conformation distortions in polymerase β support an induced-fit mechanism for fidelity. Biochemistry 44:13328-13341. (Pubitemid 41430495)
-
(2005)
Biochemistry
, vol.44
, Issue.40
, pp. 13328-13341
-
-
Arora, K.1
Beard, W.A.2
Wilson, S.H.3
Schlick, T.4
-
14
-
-
79952077426
-
Insight into base selectivity from the 1.8 Å resolution structure of an RB69 DNA polymerase ternary complex
-
Wang M, Xia S, Blaha G, Steitz TA, Konigsberg WH, Wang J (2010) Insight into base selectivity from the 1.8 Å resolution structure of an RB69 DNA polymerase ternary complex. Biochemistry 50:581-590.
-
(2010)
Biochemistry
, vol.50
, pp. 581-590
-
-
Wang, M.1
Xia, S.2
Blaha, G.3
Steitz, T.A.4
Konigsberg, W.H.5
Wang, J.6
-
15
-
-
64349098481
-
The reopening rate of the fingers domain is a determinant of base selectivity for RB69 DNA polymerase
-
Lee HR, Wang M, Konigsberg W (2009) The reopening rate of the fingers domain is a determinant of base selectivity for RB69 DNA polymerase. Biochemistry 48: 2087-2098.
-
(2009)
Biochemistry
, vol.48
, pp. 2087-2098
-
-
Lee, H.R.1
Wang, M.2
Konigsberg, W.3
-
16
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
17
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ (2007). Phaser crystallographic software. J Appl Cryst 40:458-674.
-
(2007)
J Appl Cryst
, vol.40
, pp. 458-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
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