The arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria

Plant Cell

Volumn 23, Issue 12, 2011, Pages 4446-4461

  Aung, Kyaw ^a   Hu, Jianping ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA;

EID: 84863011557     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.111.090142     Document Type: Article

References (73)

1. Abell, B.M., and Mullen, R.T. (2011). Tail-anchored membrane proteins: exploring the complex diversity of tail-anchored-protein targeting in plant cells. Plant Cell Rep. 30: 137-151.
2. Andrade-Navarro, M.A., Sanchez-Pulido, L., and McBride, H.M. (2009). Mitochondrial vesicles: An ancient process providing new links to peroxisomes. Curr. Opin. Cell Biol. 21: 560-567.
3. Arimura, S., Aida, G.P., Fujimoto, M., Nakazono, M., and Tsutsumi, N. (2004). Arabidopsis dynamin-like protein 2a (ADL2a), like ADL2b, is involved in plant mitochondrial division. Plant Cell Physiol. 45: 236-242.
4. Arimura, S., Fujimoto, M., Doniwa, Y., Kadoya, N., Nakazono, M., Sakamoto, W., and Tsutsumi, N. (2008). Arabidopsis ELONGATED MITOCHONDRIA1 is required for localization of DYNAMIN-RELATED PROTEIN3A to mitochondrial fission sites. Plant Cell 20: 1555-1566.
5. Arimura, S., and Tsutsumi, N. (2002). A dynamin-like protein (ADL2b), rather than FtsZ, is involved in Arabidopsis mitochondrial division. Proc. Natl. Acad. Sci. USA 99: 5727-5731.
6. Aung, K., and Hu, J. (2009). The Arabidopsis peroxisome division mutant pdd2 is defective in the DYNAMIN-RELATED PROTEIN3A (DRP3A) gene. Plant Signal. Behav. 4: 542-544.
7. Baker, A., Graham, I.A., Holdsworth, M., Smith, S.M., and Theodoulou, F.L. (2006). Chewing the fat: Beta-oxidation in signalling and development. Trends Plant Sci. 11: 124-132.
8. Borgese, N., Brambillasca, S., and Colombo, S. (2007). How tails guide tail-anchored proteins to their destinations. Curr. Opin. Cell Biol. 19: 368-375.
9. Chelstowska, A., and Butow, R.A. (1995). RTG genes in yeast that function in communication between mitochondria and the nucleus are also required for expression of genes encoding peroxisomal proteins. J. Biol. Chem. 270: 18141-18146.
10. Cline, K., Werner-Washburne, M., Andrews, J., and Keegstra, K. (1984). Thermolysin is a suitable protease for probing the surface of intact pea chloroplasts. Plant Physiol. 75: 675-678.
11. de Brito, O.M., and Scorrano, L. (2008). Mitofusin 2 tethers endoplasmic reticulum to mitochondria. Nature 456: 605-610.
12. Delille, H.K., Alves, R., and Schrader, M. (2009). Biogenesis of peroxisomes and mitochondria: Linked by division. Histochem. Cell Biol. 131: 441-446.
13. Delille, H.K., and Schrader, M. (2008). Targeting of hFis1 to peroxisomes is mediated by Pex19p. J. Biol. Chem. 283: 31107-31115.
14. Desai, M., and Hu, J. (2008). Light induces peroxisome proliferation in Arabidopsis seedlings through the photoreceptor phytochrome A, the transcription factor HY5 HOMOLOG, and the peroxisomal protein PEROXIN11b. Plant Physiol. 146: 1117-1127.
15. Dixit, E., et al. (2010). Peroxisomes are signaling platforms for antiviral innate immunity. Cell 141: 668-681.
16. Duek, P.D., and Fankhauser, C. (2005). bHLH class transcription factors take centre stage in phytochrome signalling. Trends Plant Sci. 10: 51-54.
17. Earley, K.W., Haag, J.R., Pontes, O., Opper, K., Juehne, T., Song, K., and Pikaard, C.S. (2006). Gateway-compatible vectors for plant functional genomics and proteomics. Plant J. 45: 616-629.
18. Epstein, C.B., Waddle, J.A., Hale IV, W., Davé, V., Thornton, J., Macatee, T.L., Garner, H.R., and Butow, R.A. (2001). Genome-wide responses to mitochondrial dysfunction. Mol. Biol. Cell 12: 297-308.
19. Fagarasanu, A., Fagarasanu, M., and Rachubinski, R.A. (2007). Maintaining peroxisome populations: A story of division and inheritance. Annu. Rev. Cell Dev. Biol. 23: 321-344.
20. Fan, J., Quan, S., Orth, T., Awai, C., Chory, J., and Hu, J. (2005). The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol. 139: 231-239.
21. Fujimoto, M., Arimura, S., Mano, S., Kondo, M., Saito, C., Ueda, T., Nakazono, M., Nakano, A., Nishimura, M., and Tsutsumi, N. (2009). Arabidopsis dynamin-related proteins DRP3A and DRP3B are functionally redundant in mitochondrial fission, but have distinct roles in peroxisomal fission. Plant J. 58: 388-400.
22. Fujiwara, T., Kuroiwa, H., Yagisawa, F., Ohnuma, M., Yoshida, Y., Yoshida, M., Nishida, K., Misumi, O., Watanabe, S., Tanaka, K., and Kuroiwa, T. (2010). The coiled-coil protein VIG1 is essential for tethering vacuoles to mitochondria during vacuole inheritance of Cyanidioschyzon merolae. Plant Cell 22: 772-781.
23. Gabaldón, T., Snel, B., van Zimmeren, F., Hemrika, W., Tabak, H., and Huynen, M.A. (2006). Origin and evolution of the peroxisomal proteome. Biol. Direct 1: 8.
24. Gandre-Babbe, S., and van der Bliek, A.M. (2008). The novel tailanchored membrane protein Mff controls mitochondrial and peroxisomal fission in mammalian cells. Mol. Biol. Cell 19: 2402-2412.
25. Gao, H., Kadirjan-Kalbach, D., Froehlich, J.E., and Osteryoung, K.W. (2003). ARC5, a cytosolic dynamin-like protein from plants, is part of the chloroplast division machinery. Proc. Natl. Acad. Sci. USA 100: 4328-4333.
26. Gillingham, A.K., and Munro, S. (2003). Long coiled-coil proteins and membrane traffic. Biochim. Biophys. Acta 1641: 71-85.
27. Halbach, A., Landgraf, C., Lorenzen, S., Rosenkranz, K., Volkmer- Engert, R., Erdmann, R., and Rottensteiner, H. (2006). Targeting of the tail-anchored peroxisomal membrane proteins PEX26 and PEX15 occurs through C-terminal PEX19-binding sites. J. Cell Sci. 119: 2508-2517.
28. Hoepfner, D., Schildknegt, D., Braakman, I., Philippsen, P., and Tabak, H.F. (2005). Contribution of the endoplasmic reticulum to peroxisome formation. Cell 122: 85-95.
29. Kaur, N., and Hu, J. (2009). Dynamics of peroxisome abundance: A tale of division and proliferation. Curr. Opin. Plant Biol. 12: 781-788.
30. Kaur, N., Reumann, S., and Hu, J. (2009). Peroxisome biogenesis and function. In The Arabidopsis Book 7: e0113, doi/10.1199/tab.0123.
31. Kobayashi, S., Tanaka, A., and Fujiki, Y. (2007). Fis1, DLP1, and Pex11p coordinately regulate peroxisome morphogenesis. Exp. Cell Res. 313: 1675-1686.
32. Koch, A., Thiemann, M., Grabenbauer, M., Yoon, Y., McNiven, M.A., and Schrader, M. (2003). Dynamin-like protein 1 is involved in peroxisomal fission. J. Biol. Chem. 278: 8597-8605.
33. Koch, A., Yoon, Y., Bonekamp, N.A., McNiven, M.A., and Schrader, M. (2005). A role for Fis1 in both mitochondrial and peroxisomal fission in mammalian cells. Mol. Biol. Cell 16: 5077-5086.
34. Kriechbaumer, V., Shaw, R., Mukherjee, J., Bowsher, C.G., Harrison, A.M., and Abell, B.M. (2009). Subcellular distribution of tail-anchored proteins in Arabidopsis. Traffic 10: 1753-1764.
35. Kruft, V., Eubel, H., Jänsch, L., Werhahn, W., and Braun, H.P. (2001). Proteomic approach to identify novel mitochondrial proteins in Arabidopsis. Plant Physiol. 127: 1694-1710.
36. Li, J.F., Park, E., von Arnim, A.G., and Nebenführ, A. (2009). The FAST technique: A simplified Agrobacterium-based transformation method for transient gene expression analysis in seedlings of Arabidopsis and other plant species. Plant Methods 5: 6.
37. Lingard, M.J., Gidda, S.K., Bingham, S., Rothstein, S.J., Mullen, R.T., and Trelease, R.N. (2008). Arabidopsis PEROXIN11c-e, FISSION1b, and DYNAMIN-RELATED PROTEIN3A cooperate in cell cycle-associated replication of peroxisomes. Plant Cell 20: 1567-1585.
38. Liu, J., and Rost, B. (2001). Comparing function and structure between entire proteomes. Protein Sci. 10: 1970-1979.
39. Mano, S., Nakamori, C., Kondo, M., Hayashi, M., and Nishimura, M. (2004). An Arabidopsis dynamin-related protein, DRP3A, controls both peroxisomal and mitochondrial division. Plant J. 38: 487-498.
40. Millar, A.H., Small, I.D., Day, D.A., and Whelan, J. (2008). Mitochondrial biogenesis and function in Arabidopsis. In The Arabidopsis Book 6: e0111, doi/10.1199/tab.0105.
41. Miyagishima, S.Y., Froehlich, J.E., and Osteryoung, K.W. (2006). PDV1 and PDV2 mediate recruitment of the dynamin-related protein ARC5 to the plastid division site. Plant Cell 18: 2517-2530.
42. Motley, A.M., Ward, G.P., and Hettema, E.H. (2008). Dnm1p-dependent peroxisome fission requires Caf4p, Mdv1p and Fis1p. J. Cell Sci. 121: 1633-1640.
43. Mozdy, A.D., McCaffery, J.M., and Shaw, J.M. (2000). Dnm1p GTPase-mediated mitochondrial fission is a multi-step process requiring the novel integral membrane component Fis1p. J. Cell Biol. 151: 367-380.
44. Nagotu, S., Krikken, A.M., Otzen, M., Kiel, J.A., Veenhuis, M., and van der Klei, I.J. (2008). Peroxisome fission in Hansenula polymorpha requires Mdv1 and Fis1, two proteins also involved in mitochondrial fission. Traffic 9: 1471-1484.
45. Nakagawa, T., Kurose, T., Hino, T., Tanaka, K., Kawamukai, M., Niwa, Y., Toyooka, K., Matsuoka, K., Jinbo, T., and Kimura, T. (2007). Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. J. Biosci. Bioeng. 104: 34-41.
46. Nelson, B.K., Cai, X., and Nebenführ, A. (2007). A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J. 51: 1126-1136.
47. Neuspiel, M., Schauss, A.C., Braschi, E., Zunino, R., Rippstein, P., Rachubinski, R.A., Andrade-Navarro, M.A., and McBride, H.M. (2008). Cargo-selected transport from the mitochondria to peroxisomes is mediated by vesicular carriers. Curr. Biol. 18: 102-108.
48. Orth, T., Reumann, S., Zhang, X., Fan, J., Wenzel, D., Quan, S., and Hu, J. (2007). The PEROXIN11 protein family controls peroxisome proliferation in Arabidopsis. Plant Cell 19: 333-350.
49. Osteryoung, K.W., and Nunnari, J. (2003). The division of endosymbiotic organelles. Science 302: 1698-1704.
50. Otera, H., Wang, C., Cleland, M.M., Setoguchi, K., Yokota, S., Youle, R.J., and Mihara, K. (2010). Mff is an essential factor for mitochondrial recruitment of Drp1 during mitochondrial fission in mammalian cells. J. Cell Biol. 191: 1141-1158.
51. Pedrazzini, E. (2009). Tail-anchored proteins in plants. J. Plant Biol. 52: 1226-1239.
52. Penfield, S., Pinfield-Wells, H.M., and Graham, I. (2006). Storage reserve mobilisation and seedling establishment in Arabidopsis. In The Arabidopsis Book 4: e0100, doi/10.1199/tab.0100.
53. Peterhansel, C., Horst, I., Niessen, M., Blume, C., Kebeish, R., Kurkcuoglu, S., and Kreuzaler, F. (2010). Photorespiration. In The Arabidopsis Book 8: e0130, doi/10.1199/tab.0130.
54. Praefcke, G.J., and McMahon, H.T. (2004). The dynamin superfamily: Universal membrane tubulation and fission molecules? Nat. Rev. Mol. Cell Biol. 5: 133-147.
55. Purdue, P.E., and Lazarow, P.B. (2001). Peroxisome biogenesis. Annu. Rev. Cell Dev. Biol. 17: 701-752.
56. Qi, Y., and Katagiri, F. (2009). Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components. Plant J. 57: 932-944.
57. Reumann, S., Ma, C., Lemke, S., and Babujee, L. (2004). AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes. Plant Physiol. 136: 2587-2608.
58. Reumann, S., Quan, S., Aung, K., Yang, P., Manandhar-Shrestha, K., Holbrook, D., Linka, N., Switzenberg, R., Wilkerson, C.G., Weber, A.P., Olsen, L.J., and Hu, J. (2009). In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Plant Physiol. 150: 125-143.
59. Rose, A., Manikantan, S., Schraegle, S.J., Maloy, M.A., Stahlberg, E.A., and Meier, I. (2004). Genome-wide identification of Arabidopsis coiled-coil proteins and establishment of the ARABI-COIL database. Plant Physiol. 134: 927-939.
60. Rose, A., Schraegle, S.J., Stahlberg, E.A., and Meier, I. (2005). Coiled-coil protein composition of 22 proteomes-Differences and common themes in subcellular infrastructure and traffic control. BMC Evol. Biol. 5: 66.
61. Schlüter, A., Fourcade, S., Ripp, R., Mandel, J.L., Poch, O., and Pujol, A. (2006). The evolutionary origin of peroxisomes: An ERperoxisome connection. Mol. Biol. Evol. 23: 838-845.
62. Scott, I., Tobin, A.K., and Logan, D.C. (2006). BIGYIN, an orthologue of human and yeast FIS1 genes functions in the control of mitochondrial size and number in Arabidopsis thaliana. J. Exp. Bot. 57: 1275-1280.
63. Seth, R.B., Sun, L., Ea, C.K., and Chen, Z.J. (2005). Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3. Cell 122: 669-682.
64. Tieu, Q., and Nunnari, J. (2000). Mdv1p is a WD repeat protein that interacts with the dynamin-related GTPase, Dnm1p, to trigger mitochondrial division. J. Cell Biol. 151: 353-366.
65. Tieu, Q., Okreglak, V., Naylor, K., and Nunnari, J. (2002). The WD repeat protein, Mdv1p, functions as a molecular adaptor by interacting with Dnm1p and Fis1p during mitochondrial fission. J. Cell Biol. 158: 445-452.
66. Titorenko, V.I., and Mullen, R.T. (2006). Peroxisome biogenesis: the peroxisomal endomembrane system and the role of the ER. J. Cell Biol. 174: 11-17.
67. Tranel, P.J., Froehlich, J., Goyal, A., and Keegstra, K. (1995). A component of the chloroplastic protein import apparatus is targeted to the outer envelope membrane via a novel pathway. EMBO J. 14: 2436-2446.
68. Wanders, R.J., and Waterham, H.R. (2006). Biochemistry of mammalian peroxisomes revisited. Annu. Rev. Biochem. 75: 295-332.
69. Werhahn, W., and Braun, H.P. (2002). Biochemical dissection of the mitochondrial proteome from Arabidopsis thaliana by three-dimensional gel electrophoresis. Electrophoresis 23: 640-646.
70. Yang, Y., Glynn, J.M., Olson, B.J., Schmitz, A.J., and Osteryoung, K.W. (2008). Plastid division: Across time and space. Curr. Opin. Plant Biol. 11: 577-584.
71. Zhang, X., and Hu, J. (2009). Two small protein families, DYNAMINRELATED PROTEIN3 and FISSION1, are required for peroxisome fission in Arabidopsis. Plant J. 57: 146-159.
72. Zhang, X., and Hu, J. (2010). The Arabidopsis chloroplast division protein DYNAMIN-RELATED PROTEIN5B also mediates peroxisome division. Plant Cell 22: 431-442.
73. Zhang, X.C., and Hu, J.P. (2008). FISSION1A and FISSION1B proteins mediate the fission of peroxisomes and mitochondria in Arabidopsis. Mol. Plant 1: 1036-1047.