-
1
-
-
0036605185
-
Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome
-
Mann, M., Ong, S.-E., Grønborg, M., Steen, H., Jensen, O.N., Pandey, A.: Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome. Trends Biotechnol. 20, 261-226 (2002)
-
(2002)
Trends Biotechnol.
, vol.20
, pp. 261-226
-
-
Mann, M.1
Ong, S.-E.2
Grønborg, M.3
Steen, H.4
Jensen, O.N.5
Pandey, A.6
-
2
-
-
27744563093
-
State-of-the-art in phosphoproteomics
-
Reinders, J., Sickmann, A.: State-of-the-art in phosphoproteomics. Proteomics 5, 4052-4061 (2005)
-
(2005)
Proteomics
, vol.5
, pp. 4052-4061
-
-
Reinders, J.1
Sickmann, A.2
-
3
-
-
52049110575
-
Advances in the analysis of protein phosphorylation
-
Paradela, A., Albar, J.P.: Advances in the analysis of protein phosphorylation. J. Proteome Res. 7, 1809-1818 (2008)
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1809-1818
-
-
Paradela, A.1
Albar, J.P.2
-
4
-
-
55849118087
-
Quantitative phosphoproteomics by mass spectrometry: Past, present, and future
-
Nita-Lazar, A., Saito-Benz, H., White, F.M.: Quantitative phosphoproteomics by mass spectrometry: Past, present, and future. Proteomics 8, 4433-4443 (2008)
-
(2008)
Proteomics
, vol.8
, pp. 4433-4443
-
-
Nita-Lazar, A.1
Saito-Benz, H.2
White, F.M.3
-
5
-
-
63049113651
-
Analytical strategies for phosphoproteomics
-
Thingholm, T.E., Jensen, O.N., Larsen, M.R.: Analytical strategies for phosphoproteomics. Proteomics 9, 1451-1468 (2009)
-
(2009)
Proteomics
, vol.9
, pp. 1451-1468
-
-
Thingholm, T.E.1
Jensen, O.N.2
Larsen, M.R.3
-
6
-
-
75749101460
-
Phosphoproteomics for the masses
-
Grimsrud, P.A., Swaney, D.L., Wenger, C.D., Beauchene, N.A., Coon, J.J.: Phosphoproteomics for the masses. ACS Chem. Biol. 5, 105-119 (2010)
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 105-119
-
-
Grimsrud, P.A.1
Swaney, D.L.2
Wenger, C.D.3
Beauchene, N.A.4
Coon, J.J.5
-
7
-
-
73849110528
-
Techniques for phosphopeptide enrichment prior to analysis by mass spectrometry
-
Dunn, J.D., Reid, G.E., Bruening, M.L.: Techniques for phosphopeptide enrichment prior to analysis by mass spectrometry. Mass Spectrom. Rev. 29, 29-54 (2010)
-
(2010)
Mass Spectrom. Rev.
, vol.29
, pp. 29-54
-
-
Dunn, J.D.1
Reid, G.E.2
Bruening, M.L.3
-
8
-
-
67649213067
-
Phosphopeptide fragmentation and analysis by mass spectrometry
-
Boersema, P.J., Mohammed, S., Heck, A.J.: Phosphopeptide fragmentation and analysis by mass spectrometry. J. Mass Spectrom. 44, 861-878 (2009)
-
(2009)
J. Mass Spectrom.
, vol.44
, pp. 861-878
-
-
Boersema, P.J.1
Mohammed, S.2
Heck, A.J.3
-
9
-
-
79955792471
-
Tandem mass spectrometry strategies for phosphoproteome analysis
-
in press. doi:10.1002/mas.20310.
-
Palumbo, A.M., Smith, S.A., Kalcic, C.L., Dantus, M., Stemmer, P.M., Reid, G.E. Tandem mass spectrometry strategies for phosphoproteome analysis. Mass Spectrom. Rev. in press. doi:10.1002/mas.20310. (2011)
-
(2011)
Mass Spectrom. Rev.
-
-
Palumbo, A.M.1
Smith, S.A.2
Kalcic, C.L.3
Dantus, M.4
Stemmer, P.M.5
Reid, G.E.6
-
10
-
-
0029822412
-
Phosphopeptide analysis by matrix-assisted laser desorption time-of-flight mass spectrometry
-
Annan, R.S., Carr, S.A.: Phosphopeptide analysis by matrix-assisted laser desorption time-of-flight mass spectrometry. Anal. Chem. 68, 3413-3421 (1996)
-
(1996)
Anal. Chem.
, vol.68
, pp. 3413-3421
-
-
Annan, R.S.1
Carr, S.A.2
-
11
-
-
39749196893
-
Mechanistic insights into the multistage gas-phase fragmentation behavior of phosphoserine- and phosphothreonine- containing peptides
-
Palumbo, A.M., Tepe, J.J., Reid, G.E.: Mechanistic insights into the multistage gas-phase fragmentation behavior of phosphoserine- and phosphothreonine- containing peptides. J. Proteome Res. 7, 771-779 (2008)
-
(2008)
J. Proteome Res.
, vol.7
, pp. 771-779
-
-
Palumbo, A.M.1
Tepe, J.J.2
Reid, G.E.3
-
12
-
-
58149116970
-
3
-
Palumbo, A.M., Reid, G.E.: Evaluation of gas-phase rearrangement and competing fragmentation reactions on protein phosphorylation site assignment using CID-MS/MS and MS3. Anal. Chem. 80, 9735-9747 (2008)
-
(2008)
Anal. Chem.
, vol.80
, pp. 9735-9747
-
-
Palumbo, A.M.1
Reid, G.E.2
-
13
-
-
0035863653
-
Analysis of protein phosphorylation by combination of elastase digest and neutral loss tandem mass spectrometry
-
Schlosser, A., Pipkorn, R., Bossemeyer, D., Lehmann, W.D.: Analysis of protein phosphorylation by combination of elastase digest and neutral loss tandem mass spectrometry. Anal. Chem. 73, 170-176 (2001)
-
(2001)
Anal. Chem.
, vol.73
, pp. 170-176
-
-
Schlosser, A.1
Pipkorn, R.2
Bossemeyer, D.3
Lehmann, W.D.4
-
14
-
-
2942692932
-
Analysis of protein phosphorylation by hypothesis-driven multiple-stage mass spectrometry
-
Chang, E.J., Archambault, V., McLachlin, D.T., Krutchinsky, A.N., Chait, B.T.: Analysis of protein phosphorylation by hypothesis-driven multiple-stage mass spectrometry. Anal. Chem. 76, 4472-4483 (2004)
-
(2004)
Anal. Chem.
, vol.76
, pp. 4472-4483
-
-
Chang, E.J.1
Archambault, V.2
McLachlin, D.T.3
Krutchinsky, A.N.4
Chait, B.T.5
-
15
-
-
3042824849
-
A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry
-
Schroeder, M.J., Shabanowitz, J., Schwartz, J.C., Hunt, D.F., Coon, J.J.: A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry. Anal. Chem. 76, 3590-3598 (2004)
-
(2004)
Anal. Chem.
, vol.76
, pp. 3590-3598
-
-
Schroeder, M.J.1
Shabanowitz, J.2
Schwartz, J.C.3
Hunt, D.F.4
Coon, J.J.5
-
16
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
Beausoleil, S.A., Villén, J., Gerber, S.A., Rush, J., Gygi, S.P.: A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat. Biotechnol. 24, 1285-1292 (2006)
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villén, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
17
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J.V., Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P., Mann, M.: Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127, 635-648 (2006)
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
MacEk, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
18
-
-
61849182590
-
Comparison of MS(2)-only, MSA, and MS(2)/MS (3) methodologies for phosphopeptide identification
-
Ulintz, P.J., Yocum, A.K., Bodenmiller, B., Aebersold, R., Andrews, P. C., Nesvizhskii, A.: Comparison of MS(2)-only, MSA, and MS(2)/MS (3) methodologies for phosphopeptide identification. J. Proteome Res. 8, 887-899 (2009)
-
(2009)
J. Proteome Res.
, vol.8
, pp. 887-899
-
-
Ulintz, P.J.1
Yocum, A.K.2
Bodenmiller, B.3
Aebersold, R.4
Andrews, P.C.5
Nesvizhskii, A.6
-
19
-
-
3042789073
-
Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
-
Syka, J.E.P., Coon, J.J., Schroeder, M.J., Shabanowitz, J., Hunt, D.F.: Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 101, 9528-9533 (2004)
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 9528-9533
-
-
Syka, J.E.P.1
Coon, J.J.2
Schroeder, M.J.3
Shabanowitz, J.4
Hunt, D.F.5
-
20
-
-
55849104839
-
Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications
-
Wiesner, J., Premsler, T., Sickmann, A.: Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications. Proteomics 8, 4466-4483 (2008)
-
(2008)
Proteomics
, vol.8
, pp. 4466-4483
-
-
Wiesner, J.1
Premsler, T.2
Sickmann, A.3
-
21
-
-
36749068401
-
Performance evaluation of electron transfer dissociation
-
Good, D.M., Wirtala, M., McAlister, G.C., Coon, J.J.: Performance evaluation of electron transfer dissociation. Mol. Cell. Proteomics 6, 1942-1951 (2007)
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1942-1951
-
-
Good, D.M.1
Wirtala, M.2
McAlister, G.C.3
Coon, J.J.4
-
22
-
-
33847782587
-
Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry
-
Molina, H., Horn, D.M., Tang, N., Mathivanan, S., Pandey, A.: Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 104, 2199-2204 (2007)
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 2199-2204
-
-
Molina, H.1
Horn, D.M.2
Tang, N.3
Mathivanan, S.4
Pandey, A.5
-
23
-
-
56149086397
-
Decision tree-driven tandem mass spectrometry for shotgun proteomics
-
Swaney, D.L., McAlister, G.C., Coon, J.J.: Decision tree-driven tandem mass spectrometry for shotgun proteomics. Nat. Method 5, 959-964 (2008)
-
(2008)
Nat. Method
, vol.5
, pp. 959-964
-
-
Swaney, D.L.1
McAlister, G.C.2
Coon, J.J.3
-
24
-
-
59049086847
-
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
-
Swaney, D.L., Wenger, C.D., Thomson, J.A., Coon, J.J.: Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 106, 995-1000 (2009)
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 995-1000
-
-
Swaney, D.L.1
Wenger, C.D.2
Thomson, J.A.3
Coon, J.J.4
-
25
-
-
79953171557
-
Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria
-
in press. doi: 10.1074/mcp.M110.000117
-
Deng, N., Zhang, J., Zong, C., Wang, Y., Lu, H., Yang, P., Wang, W., Young, G. W., Wang, Y., Korge, P., Lotz, C., Doran, P., Liem, D.A., Apweiler, R., Weiss, J.N., Duan, H., Ping, P. Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria. Mol. Cell. Proeomt. in press. doi: 10.1074/mcp.M110.000117. (2011)
-
(2011)
Mol. Cell. Proeomt.
-
-
Deng, N.1
Zhang, J.2
Zong, C.3
Wang, Y.4
Lu, H.5
Yang, P.6
Wang, W.7
Young, G.W.8
Wang, Y.9
Korge, P.10
Lotz, C.11
Doran, P.12
Liem, D.A.13
Apweiler, R.14
Weiss, J.N.15
Duan, H.16
Ping, P.17
-
26
-
-
0033052343
-
Study on the synthesis and characterization of peptides containing pY
-
Bonewald, L.F., Bibbs, L., Kates, S.A., Khatri, A., McMurray, J.S., Medzihradszky, K.F., Weintraub, S.T.: Study on the synthesis and characterization of peptides containing pY. J. Peptide Res. 53, 161-169 (1999)
-
(1999)
J. Peptide Res.
, vol.53
, pp. 161-169
-
-
Bonewald, L.F.1
Bibbs, L.2
Kates, S.A.3
Khatri, A.4
McMurray, J.S.5
Medzihradszky, K.F.6
Weintraub, S.T.7
-
27
-
-
0034845380
-
Phosphopeptide analysis by positive and negative ion MALDI MS
-
Janek, K., Wenschuh, H., Bienert, M., Krause, E.: Phosphopeptide analysis by positive and negative ion MALDI MS. Rapid Commun. Mass Spectrom. 15, 1593-1599 (2001)
-
(2001)
Rapid Commun. Mass Spectrom.
, vol.15
, pp. 1593-1599
-
-
Janek, K.1
Wenschuh, H.2
Bienert, M.3
Krause, E.4
-
28
-
-
66249133391
-
The relative influence of phosphorylation and methylation on responsiveness of peptides to MALDI and ESI mass spectrometry
-
Gropengiesser, J., Varadarajan, B.T., Stephanowitz, H., Krause, E.: The relative influence of phosphorylation and methylation on responsiveness of peptides to MALDI and ESI mass spectrometry. J. Mass Spectrom. 44, 821-831 (2009)
-
(2009)
J. Mass Spectrom.
, vol.44
, pp. 821-831
-
-
Gropengiesser, J.1
Varadarajan, B.T.2
Stephanowitz, H.3
Krause, E.4
-
29
-
-
31644439146
-
Phosphorylation analysis by mass spectrometry: Myths, facts, and the consequences for qualitative and quantitative measurements
-
Steen, H., Jebanathirajah, J.A., Rush, J., Morrice, N., Kirschner, M.W.: Phosphorylation analysis by mass spectrometry: Myths, facts, and the consequences for qualitative and quantitative measurements. Mol. Cell. Proteom. 5, 172-181 (2006)
-
(2006)
Mol. Cell. Proteom.
, vol.5
, pp. 172-181
-
-
Steen, H.1
Jebanathirajah, J.A.2
Rush, J.3
Morrice, N.4
Kirschner, M.W.5
-
30
-
-
33847778786
-
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry
-
Chi, A., Huttenhower, C., Geer, L.Y., Coon, J.J., Syka, J.E.P., Bai, D. L., Shabanowitz, J., Burke, D.J., Troyanskaya, O.G., Hunt, D.F.: Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 104, 2193-2198 (2007)
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 2193-2198
-
-
Chi, A.1
Huttenhower, C.2
Geer, L.Y.3
Coon, J.J.4
Syka, J.E.P.5
Bai, D.L.6
Shabanowitz, J.7
Burke, D.J.8
Troyanskaya, O.G.9
Hunt, D.F.10
-
31
-
-
42949113985
-
Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase
-
Taouatas, N., Drugan, M.M., Heck, A.J.R., Mohammed, S.: Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase. Nat. Methods 5, 405-407 (2008)
-
(2008)
Nat. Methods
, vol.5
, pp. 405-407
-
-
Taouatas, N.1
Drugan, M.M.2
Heck, A.J.R.3
Mohammed, S.4
-
32
-
-
37249053773
-
Peptide sequencing and characterization of post-translational modifications by enhanced ion-charging and liquid chromatography electron-transfer dissociation tandem mass spectrometry
-
Kjeldsen, F., Giessing, A., Ingrell, C.R., Jensen, O.N.: Peptide sequencing and characterization of post-translational modifications by enhanced ion-charging and liquid chromatography electron-transfer dissociation tandem mass spectrometry. Anal. Chem. 79, 9243-9252 (2007)
-
(2007)
Anal. Chem.
, vol.79
, pp. 9243-9252
-
-
Kjeldsen, F.1
Giessing, A.2
Ingrell, C.R.3
Jensen, O.N.4
-
33
-
-
73449084419
-
New reagents for increasing ESI multiple charging of proteins and protein complexes
-
Lomeli, S.H., Peng, I.X., Yin, S., Ogorzalek Loo, R.R., Loo, J.A.: New reagents for increasing ESI multiple charging of proteins and protein complexes. J. Am. Soc. Mass Spectrom. 21, 127-131 (2010)
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 127-131
-
-
Lomeli, S.H.1
Peng, I.X.2
Yin, S.3
Ogorzalek Loo, R.R.4
Loo, J.A.5
-
34
-
-
33750594230
-
Chemistry meets proteomics: The use of chemical tagging reactions for MS-based proteomics
-
Leitner, A., Lindner, W.: Chemistry meets proteomics: the use of chemical tagging reactions for MS-based proteomics. Proteomics 6, 5418-5434 (2006)
-
(2006)
Proteomics
, vol.6
, pp. 5418-5434
-
-
Leitner, A.1
Lindner, W.2
-
35
-
-
65349147669
-
Chemical tagging strategies for mass spectrometry-based phospho-proteomics
-
Leitner, A., Lindner, W.: Chemical tagging strategies for mass spectrometry-based phospho-proteomics. Methods Mol. Biol. 527, 229-243 (2009)
-
(2009)
Methods Mol. Biol.
, vol.527
, pp. 229-243
-
-
Leitner, A.1
Lindner, W.2
-
36
-
-
33745268913
-
Enhancing electrospray ionization efficiency of peptides by derivatization
-
Mirzaei, H., Regnier, F.: Enhancing electrospray ionization efficiency of peptides by derivatization. Anal. Chem. 78, 4175-4183 (2006)
-
(2006)
Anal. Chem.
, vol.78
, pp. 4175-4183
-
-
Mirzaei, H.1
Regnier, F.2
-
37
-
-
70349619670
-
Enhanced electron transfer dissociation through fixed charge derivatization of cysteines
-
Vasicek, L., Brodbelt, J.S.: Enhanced electron transfer dissociation through fixed charge derivatization of cysteines. Anal. Chem. 81, 7876-7884 (2009)
-
(2009)
Anal. Chem.
, vol.81
, pp. 7876-7884
-
-
Vasicek, L.1
Brodbelt, J.S.2
-
38
-
-
66149143552
-
Simplifying fragmentation patterns of multiply charged peptides by N-terminal derivatization and electron transfer collision activated dissociation
-
Madsen, J.A., Brodbelt, J.S.: Simplifying fragmentation patterns of multiply charged peptides by N-terminal derivatization and electron transfer collision activated dissociation. Anal. Chem. 81, 3645-3653 (2009)
-
(2009)
Anal. Chem.
, vol.81
, pp. 3645-3653
-
-
Madsen, J.A.1
Brodbelt, J.S.2
-
39
-
-
55549131141
-
Mass spectrometry analysis of phosphopeptides after peptide carboxy group derivatization
-
Xu, Y., Zhang, L., Lu, H., Yang, P.: Mass spectrometry analysis of phosphopeptides after peptide carboxy group derivatization. Anal. Chem. 80, 8324-8328 (2008)
-
(2008)
Anal. Chem.
, vol.80
, pp. 8324-8328
-
-
Xu, Y.1
Zhang, L.2
Lu, H.3
Yang, P.4
-
40
-
-
69449108512
-
Carboxy group derivatization for enhanced electron-transfer dissociation mass spectrometric analysis of phosphopeptides
-
Zhang, L., Xu, Y., Lu, H., Yang, P.: Carboxy group derivatization for enhanced electron-transfer dissociation mass spectrometric analysis of phosphopeptides. Proteomics 9, 4093-4097 (2009)
-
(2009)
Proteomics
, vol.9
, pp. 4093-4097
-
-
Zhang, L.1
Xu, Y.2
Lu, H.3
Yang, P.4
-
41
-
-
70349102102
-
Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation
-
Hennrich, M.L., Boersema, P.J., van den Toorn, H., Mischerikow, N., Heck, A.J., Mohammed, S.: Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation. Anal. Chem. 81, 7814-7822 (2009)
-
(2009)
Anal. Chem.
, vol.81
, pp. 7814-7822
-
-
Hennrich, M.L.1
Boersema, P.J.2
Van Den Toorn, H.3
Mischerikow, N.4
Heck, A.J.5
Mohammed, S.6
-
42
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P.L., Huang, Y.N., Marchese, J.N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., Pappin, D.J.: Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteom. 4, 1154-1169 (2004)
-
(2004)
Mol. Cell. Proteom.
, vol.4
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
43
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
Thompson, A., Schäfer, J., Kuhn, K., Kienle, S., Schwarz, J., Schmidt, G., Neumann, T., Hamon, C.: Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75, 1895-1904 (2003)
-
(2003)
Anal. Chem.
, vol.75
, pp. 1895-1904
-
-
Thompson, A.1
Schäfer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Hamon, C.8
-
44
-
-
63649139204
-
Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry
-
Phanstiel, D., Unwin, R., McAlister, G.C., Coon, J.J.: Peptide quantification using 8-plex isobaric tags and electron transfer dissociation tandem mass spectrometry. Anal. Chem. 81, 1693-1698 (2009)
-
(2009)
Anal. Chem.
, vol.81
, pp. 1693-1698
-
-
Phanstiel, D.1
Unwin, R.2
McAlister, G.C.3
Coon, J.J.4
-
45
-
-
33645509355
-
Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: Application to proteins isolated by gel electrophoresis
-
Sachon, E., Mohammed, S., Bache, N., Jensen, O.N.: Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: application to proteins isolated by gel electrophoresis. Rapid Commun. Mass Spectrom. 20, 1127-1134 (2006)
-
(2006)
Rapid Commun. Mass Spectrom.
, vol.20
, pp. 1127-1134
-
-
Sachon, E.1
Mohammed, S.2
Bache, N.3
Jensen, O.N.4
-
46
-
-
67649563273
-
Quantification of post-translationally modified peptides of bovine α-crystalline using tandem mass tags and electron transfer dissociation
-
Viner, R.I., Zhang, T., Second, T., Zabrouskov, V.: Quantification of post-translationally modified peptides of bovine α-crystalline using tandem mass tags and electron transfer dissociation. J. Proteoms. 72, 874-885 (2009)
-
(2009)
J. Proteoms.
, vol.72
, pp. 874-885
-
-
Viner, R.I.1
Zhang, T.2
Second, T.3
Zabrouskov, V.4
-
47
-
-
73649140983
-
Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1α signaling network: An initial study in GSC11 glioblastoma stem cells
-
Nilsson, C.L., Dillon, R., Devakumar, A., Shi, S.D., Greig, M., Rogers, J.C., Krastins, B., Rosenblatt, M., Kilmer, G., Major, M., Kaboord, B.J., Sarracino, D., Rezai, T., Prakash, A., Lopez, M., Ji, Y., Priebe, W., Lang, F.F., Colman, H., Conrad, C.A.: Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1α signaling network: An initial study in GSC11 glioblastoma stem cells. J. Proteome Res. 9, 430-443 (2010)
-
(2010)
J. Proteome Res.
, vol.9
, pp. 430-443
-
-
Nilsson, C.L.1
Dillon, R.2
Devakumar, A.3
Shi, S.D.4
Greig, M.5
Rogers, J.C.6
Krastins, B.7
Rosenblatt, M.8
Kilmer, G.9
Major, M.10
Kaboord, B.J.11
Sarracino, D.12
Rezai, T.13
Prakash, A.14
Lopez, M.15
Ji, Y.16
Priebe, W.17
Lang, F.F.18
Colman, H.19
Conrad, C.A.20
more..
-
48
-
-
77953595441
-
Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency
-
Thingholm, T.E., Palmisano, G., Kjeldsen, F., Larsen, M.R.: Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency. J. Prot. Res. 9, 4045-4052 (2010)
-
(2010)
J. Prot. Res.
, vol.9
, pp. 4045-4052
-
-
Thingholm, T.E.1
Palmisano, G.2
Kjeldsen, F.3
Larsen, M.R.4
-
49
-
-
77955159809
-
Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap
-
Pichler, P., Köcher, T., Holzmann, J., Mazanek, M., Taus, T., Ammerer, G., Mechtler, K.: Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap. Anal. Chem. 82, 6549-6558 (2010)
-
(2010)
Anal. Chem.
, vol.82
, pp. 6549-6558
-
-
Pichler, P.1
Köcher, T.2
Holzmann, J.3
Mazanek, M.4
Taus, T.5
Ammerer, G.6
Mechtler, K.7
-
50
-
-
52649098504
-
Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer
-
Bantscheff, M., Boesche, M., Eberhard, D., Matthieson, T., Sweetman, G., Kuster, B.: Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer. Mol. Cell. Proteom. 7, 1702-1713 (2008)
-
(2008)
Mol. Cell. Proteom.
, vol.7
, pp. 1702-1713
-
-
Bantscheff, M.1
Boesche, M.2
Eberhard, D.3
Matthieson, T.4
Sweetman, G.5
Kuster, B.6
-
51
-
-
66149089175
-
Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides
-
Yang, F., Wu, S., Stenoien, D.L., Zhao, R., Monroe, M.E., Gritsenko, M.A., Purvine, S.O., Polpitiya, A.D., Tolić, N., Zhang, Q., Norbeck, A.D., Orton, D.J., Moore, R.J., Tang, K., Anderson, G. A., Pasa-Tolić, L., Camp, D.G., Smith, R.D.: Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides. Anal. Chem. 81, 4137-4143 (2009)
-
(2009)
Anal. Chem.
, vol.81
, pp. 4137-4143
-
-
Yang, F.1
Wu, S.2
Stenoien, D.L.3
Zhao, R.4
Monroe, M.E.5
Gritsenko, M.A.6
Purvine, S.O.7
Polpitiya, A.D.8
Tolić, N.9
Zhang, Q.10
Norbeck, A.D.11
Orton, D.J.12
Moore, R.J.13
Tang, K.14
Anderson, G.A.15
Pasa-Tolić, L.16
Camp, D.G.17
Smith, R.D.18
-
52
-
-
55249089723
-
Electron transfer dissociation of iTRAQ labeled peptide ions
-
Han, H., Pappin, D.J., Ross, P.L., McLuckey, S.A.: Electron transfer dissociation of iTRAQ labeled peptide ions. J. Proteome Res. 7, 3643-3648 (2008)
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3643-3648
-
-
Han, H.1
Pappin, D.J.2
Ross, P.L.3
McLuckey, S.A.4
-
53
-
-
50849096388
-
Peptide and protein quantification using iTRAQ with electron transfer dissociation
-
Phanstiel, D., Zhang, Y., Marto, J.A., Coon, J.J.: Peptide and protein quantification using iTRAQ with electron transfer dissociation. J. Am. Soc. Mass Spectrom. 19, 1255-1262 (2008)
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 1255-1262
-
-
Phanstiel, D.1
Zhang, Y.2
Marto, J.A.3
Coon, J.J.4
-
54
-
-
77956851736
-
Gaining efficiency by parallel quantification and identification of iTRAQ-labeled peptides using HCD and decision tree guided CID/ETD on an LTQ Orbitrap
-
Mischerikow, N., van Nierop, P., Li, K.W., Bernstein, H.G., Smit, A.B., Heck, A.J., Altelaar, A.F.: Gaining efficiency by parallel quantification and identification of iTRAQ-labeled peptides using HCD and decision tree guided CID/ETD on an LTQ Orbitrap. Analyst 135, 2643-2652 (2010)
-
(2010)
Analyst
, vol.135
, pp. 2643-2652
-
-
Mischerikow, N.1
Van Nierop, P.2
Li, K.W.3
Bernstein, H.G.4
Smit, A.B.5
Heck, A.J.6
Altelaar, A.F.7
-
55
-
-
70349973075
-
Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation
-
Boja, E.S., Phillips, D., French, S.A., Harris, R.A., Balaban, R.S.: Quantitative mitochondrial phosphoproteomics using iTRAQ on an LTQ-Orbitrap with high energy collision dissociation. J. Proteome Res. 8, 4665-4675 (2009)
-
(2009)
J. Proteome Res.
, vol.8
, pp. 4665-4675
-
-
Boja, E.S.1
Phillips, D.2
French, S.A.3
Harris, R.A.4
Balaban, R.S.5
-
56
-
-
20444490423
-
Selective Identification and quantitative analysis of methionine containing peptides by charge derivatization and tandem mass spectrometry
-
Reid, G.E., Roberts, K.D., Simpson, R.J., O'Hair, R.A.J.: Selective Identification and quantitative analysis of methionine containing peptides by charge derivatization and tandem mass spectrometry. J. Am. Soc. Mass Spectrom. 16, 1131-1150 (2005)
-
(2005)
J. Am. Soc. Mass Spectrom.
, vol.16
, pp. 1131-1150
-
-
Reid, G.E.1
Roberts, K.D.2
Simpson, R.J.3
O'hair, R.A.J.4
-
57
-
-
53549129478
-
3" for the targeted identification, characterization, and quantitative analysis of methionine- containing peptides
-
Froelich, J.M., Kaplinghat, S., Reid, G.E.: Automated neutral loss and data dependent energy resolved "Pseudo MS3" for the targeted identification, characterization, and quantitative analysis of methionine- containing peptides. Eur. J. Mass Spectrom. 14, 219-229 (2008)
-
(2008)
Eur. J. Mass Spectrom.
, vol.14
, pp. 219-229
-
-
Froelich, J.M.1
Kaplinghat, S.2
Reid, G.E.3
-
58
-
-
33751333714
-
Mechanisms for the selective gas-phase fragmentation reactions of methionine side chain fixed charge sulfonium ion containing peptides
-
Amunugama, M., Roberts, K.D., Reid, G.E.: Mechanisms for the selective gas-phase fragmentation reactions of methionine side chain fixed charge sulfonium ion containing peptides. J. Am. Soc. Mass Spectrom. 17, 1631-1642 (2006)
-
(2006)
J. Am. Soc. Mass Spectrom.
, vol.17
, pp. 1631-1642
-
-
Amunugama, M.1
Roberts, K.D.2
Reid, G.E.3
-
59
-
-
33847075498
-
Leaving group effects on the selective gas phase fragmentation reactions of cysteine side chain fixed charge containing peptide ions
-
Roberts, K.D., Reid, G.E.: Leaving group effects on the selective gas phase fragmentation reactions of cysteine side chain fixed charge containing peptide ions. J. Mass Spectrom. 42, 187-198 (2007)
-
(2007)
J. Mass Spectrom.
, vol.42
, pp. 187-198
-
-
Roberts, K.D.1
Reid, G.E.2
-
60
-
-
77958185973
-
'Fixed charge' Chemical derivatization and data dependant multistage tandem mass spectrometry for mapping protein surface residue accessibility
-
Zhou, X., Lu, Y., Wang, W., Borhan, B., Reid, G.E.: 'Fixed charge' Chemical derivatization and data dependant multistage tandem mass spectrometry for mapping protein surface residue accessibility. J. Am. Soc. Mass Spectrom. 21, 1339-1351 (2010)
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 1339-1351
-
-
Zhou, X.1
Lu, Y.2
Wang, W.3
Borhan, B.4
Reid, G.E.5
-
61
-
-
57449117894
-
An ionic reagent for controlling the gas-phase fragmentation reactions of cross-linked peptides
-
Lu, Y., Tanasova, M., Borhan, B., Reid, G.E.: An ionic reagent for controlling the gas-phase fragmentation reactions of cross-linked peptides. Anal. Chem. 80, 9279-9287 (2008)
-
(2008)
Anal. Chem.
, vol.80
, pp. 9279-9287
-
-
Lu, Y.1
Tanasova, M.2
Borhan, B.3
Reid, G.E.4
-
62
-
-
33750447264
-
-
Jessing, M., Brandt, M., Jensen, K.J., Christensen, J.B., Boas, U.J.: Org. Chem. 71, 6734-6741 (2006)
-
(2006)
Org. Chem.
, vol.71
, pp. 6734-6741
-
-
Jessing, M.1
Brandt, M.2
Jensen, K.J.3
Christensen, J.B.4
Boas, U.J.5
-
63
-
-
0030952515
-
-
Crouch, N.P., Adlington, R.M., Baldwin, J.E., Lee, M.-H., MacKinnon, C.H.: Tetrahedron 53, 6993-7010 (1997)
-
(1997)
Tetrahedron
, vol.53
, pp. 6993-7010
-
-
Crouch, N.P.1
Adlington, R.M.2
Baldwin, J.E.3
Lee, M.-H.4
MacKinnon, C.H.5
-
64
-
-
78650399070
-
Alkylating tryptic peptides to enhance electrospray ionization mass spectrometry analysis
-
Kulevich, S.E., Frey, B.L., Kreitinger, G., Smith, L.M.: Alkylating tryptic peptides to enhance electrospray ionization mass spectrometry analysis. Anal. Chem. 82, 10135-10142 (2010)
-
(2010)
Anal. Chem.
, vol.82
, pp. 10135-10142
-
-
Kulevich, S.E.1
Frey, B.L.2
Kreitinger, G.3
Smith, L.M.4
-
65
-
-
5744223586
-
-
Krokhin, O.V., Craig, R., Spicer, V., Ens, W., Standing, K.G., Beavis, R.C., Wilkins, J.A.: Mol. Cell. Proteom. 3, 908-919 (2004)
-
(2004)
Mol. Cell. Proteom.
, vol.3
, pp. 908-919
-
-
Krokhin, O.V.1
Craig, R.2
Spicer, V.3
Ens, W.4
Standing, K.G.5
Beavis, R.C.6
Wilkins, J.A.7
-
66
-
-
34250172066
-
Achieving augmented limits of detection for peptides with hydrophobic alkyl tags
-
Frahm, J.L., Bori, I.D., Comins, D.L., Hawkridge, A.M., Muddiman, D. C.: Achieving augmented limits of detection for peptides with hydrophobic alkyl tags. Anal. Chem. 79, 3989-3995 (2007)
-
(2007)
Anal. Chem.
, vol.79
, pp. 3989-3995
-
-
Frahm, J.L.1
Bori, I.D.2
Comins, D.L.3
Hawkridge, A.M.4
Muddiman, D.C.5
-
67
-
-
49049104638
-
Quantification of the compositional information provided by immonium ions on a quadrupole-TOF mass spectrometer
-
Hohmann, L.J., Eng, J.K., Gemmill, A., Klimek, J., Vitek, O., Reid, G. E., Martin, D.B.: Quantification of the compositional information provided by immonium ions on a quadrupole-TOF mass spectrometer. Anal. Chem. 80, 5596-5606 (2008)
-
(2008)
Anal. Chem.
, vol.80
, pp. 5596-5606
-
-
Hohmann, L.J.1
Eng, J.K.2
Gemmill, A.3
Klimek, J.4
Vitek, O.5
Reid, G.E.6
Martin, D.B.7
-
68
-
-
79952496201
-
Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation
-
Xia, Q.W., Lee, M.V., Rose, C.M., Marsh, A.J., Hubler, S.L., Wenger, C.D., Coon, J.J.: Characterization and diagnostic value of amino acid side chain neutral losses following electron-transfer dissociation. J. Am. Soc. Mass Spectrom. 22, 255-264 (2011)
-
(2011)
J. Am. Soc. Mass Spectrom.
, vol.22
, pp. 255-264
-
-
Xia, Q.W.1
Lee, M.V.2
Rose, C.M.3
Marsh, A.J.4
Hubler, S.L.5
Wenger, C.D.6
Coon, J.J.7
-
69
-
-
53149153136
-
The effect of fixed charge modifications on electron capture dissociation
-
Li, X., Cournoyer, J.J., Lin, C., O'Connor, P.B.: The effect of fixed charge modifications on electron capture dissociation. J. Am. Soc. Mass Spectrom. 19, 1514-1526 (2008)
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 1514-1526
-
-
Li, X.1
Cournoyer, J.J.2
Lin, C.3
O'Connor, P.B.4
-
70
-
-
34447623764
-
The combination of electron capture dissociation and fixed charge derivatization increases sequence coverage for O-glycosylated and O-phosphorylated peptides
-
Chamot-Rooke, J., van der Rest, G., Dalleu, A., Bayc, S., Lemoineb, J.: The combination of electron capture dissociation and fixed charge derivatization increases sequence coverage for O-glycosylated and O-phosphorylated peptides. J. Am. Soc. Mass Spectrom. 18, 1405-1413 (2007)
-
(2007)
J. Am. Soc. Mass Spectrom.
, vol.18
, pp. 1405-1413
-
-
Chamot-Rooke, J.1
Van Der Rest, G.2
Dalleu, A.3
Bayc, S.4
Lemoineb, J.5
-
71
-
-
33846269339
-
Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
-
Swaney, D.L., McAlister, G.C., Wirtala, M., Schwartz, J.C., Syka, J.E. P., Coon, J.J.: Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors. Anal. Chem. 79, 477-485 (2007)
-
(2007)
Anal. Chem.
, vol.79
, pp. 477-485
-
-
Swaney, D.L.1
McAlister, G.C.2
Wirtala, M.3
Schwartz, J.C.4
Syka, J.E.P.5
Coon, J.J.6
-
72
-
-
0036523809
-
Minimizing resolution of isotopically coded peptides in comparative proteomics
-
Zhang, R., Regnier, F.E.: Minimizing resolution of isotopically coded peptides in comparative proteomics. J. Proteome Res. 1, 139-147 (2002)
-
(2002)
J. Proteome Res.
, vol.1
, pp. 139-147
-
-
Zhang, R.1
Regnier, F.E.2
|