Quantum dot-enhanced detection of dual short RNA sequences via one-step template-dependent surface hybridization

Analytica Chimica Acta

Volumn 735, Issue , 2012, Pages 114-120

  Song, Wenqing ^a   Qiu, Xue ^a   Lau, Choiwan ^a   Lu, Jianzhong ^a  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

Ligase free reaction; One step hybridization; Quantum dots; Short RNA

Indexed keywords

96-WELL PLATE; DESIGN STRATEGIES; FUNCTIONALIZED; LIGASE-FREE REACTION; LIGATION REACTIONS; ONE-STEP HYBRIDIZATION; RNA DETECTION; RNA SEQUENCES; THREE-COMPONENT;

CHEMICAL DETECTION; PROBES; SEMICONDUCTOR QUANTUM DOTS;

RNA;

QUANTUM DOT; RNA;

ARTICLE; COMPLEX FORMATION; CONCENTRATION (PARAMETERS); INTERMETHOD COMPARISON; MELTING POINT; PRIORITY JOURNAL; PROCESS DESIGN; REPORTER GENE; RNA ANALYSIS; RNA HYBRIDIZATION; RNA PROBE; RNA SEQUENCE; RNA STRUCTURE; TEMPLATE DEPENDENT SURFACE HYBRIDIZATION;

BASE SEQUENCE; DNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; QUANTUM DOTS; RNA; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, FLUORESCENCE;

EID: 84862339473     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2012.05.031     Document Type: Article

References (34)

1. Cummins J.M., Velculescu V.E. Oncogene 2006, 25:6220-6227.
2. Ehsani A., Saetrom P., Zhang J., Alluin J., Li H.T., Aagaard L.O.S., Rossi J.J. Mol. Therapy 2010, 18:792-802.
3. Kato M., Slack F.J. Biol. Cell 2008, 100:71-81.
4. Couzin J. Science 2002, 298:2296-2297.
5. Riddihough G. Science 2005, 309:1507.
6. Wark A.W., Lee H.J., Corn R.M. Angew. Chem., Int. Ed. 2008, 47:644-652.
7. Cissell K.A., Shrestha S., Deo S.K. Anal. Chem. 2007, 79:4754-4761.
8. Valoczi A., Hornyik C., Varga N., Burgyan J., Kauppinen S., Havelda Z. Nucleic Acids Res. 2004, 32:e175.
9. Thomson J.M., Parker J., Perou C.M., Hammond S.M. Nat. Methods 2004, 1:47-53.
10. Shingara J., Keiger K., Shelton J., Laosinchai-Wolf W., Powers P., Conrad R., Brown D., Labourier E. RNA 2005, 11:1461-1470.
11. Pena J.T., Sohn-Lee C., Rouhanifard S.H., Ludwig J., Hafner M., Mihailovic A., Lim C., Holoch D., Berninger P., Zavolan M., Tuschl T. Nat. Methods 2009, 6:139-141.
12. Chen C., Ridzon D.A., Broomer A.J., Zhou Z., Lee D.H., Nguyen J.T., Barbisin M., Xu N.L., Mahuvakar V.R., Andersen M.R., Lao K.Q., Livak K.J., Guegler K.J. Nucleic Acids Res. 2005, 33:e179.
13. Khan N., Cheng J., Pezacki J.P., Berezovski M.V. Anal. Chem. 2011, 83:6196-6201.
14. Zhou W.J., Chen Y.L., Corn R.M. Anal. Chem. 2011, 83:3897-3902.
15. Wu X.Y., Liu H.J., Liu J.Q., Haley K.N., Treadway J.A., Larson J.P., Ge N.F., Peale F., Bruchez M.P. Nat. Biotechnol. 2003, 21:41-46.
16. Bruchez M., Moronne M., Gin P., Weiss S., Alivisatos A.P. Science 1998, 281:2013-2016.
17. Han M.Y., Gao X.H., Su J.Z., Nie S.M. Nat. Biotechnol. 2001, 19:631-635.
18. Howarth M., Liu W., Puthenveetil S., Zheng Y., Marshall L.F., Schmidt M.M., Wittrup K.D., Bawendi M.G., Ting A.Y. Nat. Methods 2008, 5:397-399.
19. Somers R.C., Bawendi M.G., Nocera D.G. Chem. Soc. Rev. 2007, 36:579-591.
20. Michalet X., Pinaud F.F., Bentolila L.A., Tsay J.M., Doose S., Li J.J., Sundaresan G., Wu A.M., Gambhir S.S., Weiss S. Science 2005, 307:538-544.
21. Cai S., Lau C.W., Lu J.Z. Anal. Chem. 2010, 82:7178-7184.
22. Knudsen S.M., Lee J., Ellington A.D., Savran C.A. J. Am. Chem. Soc. 2006, 128:15936-15937.
23. Kausar A., McKay R.D., Lam J., Bhogal R.S., Tang A.Y., Gibbs-Davis J.M. Angew. Chem., Int. Ed. 2011, 50:8922-8926.
24. Hurst S.J., Hill H.D., Mirkin C.A. J. Am. Chem. Soc. 2008, 130:12192-12200.
25. Jin R., Wu G., Li Z., Mirkin C.A., Schatz G.C. J. Am. Chem. Soc. 2003, 125:1643-1654.
26. Li J.S., Schachermeyer S., Wang Y., Yin Y.D., Zhong W.W. Anal. Chem. 2009, 81:9723-9729.
27. Cheng Y.Q., Zhang X., Li Z.P., Jiao X.X., Wang Y.C., Zhang Y.L. Angew. Chem., Int. Ed. 2009, 48:3268-3272.
28. Mirkin C.A., Letsinger R.L., Mucic R.C., Storhoff J.J. Nature 1996, 382:607-609.
29. Lytton-Jean A.K.R., Gibbs-Davis J.M., Long H., Schatz G.C., Mirkin C.A., Nguyen S.T. Adv. Mater. 2009, 21:706-709.
30. Gibbs J.M., Park S., Anderson D.R., Watson K.J., Mirkin C.A., Nguyen S.T. J. Am. Chem. Soc. 2005, 127:1170-1178.
31. Wang H.Q., Li Y.Q., Wang J.H., Xu Q., Li X.Q., Zhao Y.D. Anal. Chim. Acta 2008, 610:68-73.
32. Medintz I.L., Clapp A.R., Mattoussi H., Goldman E.R., Fisher B., Mauro J.M. Nat. Mater. 2003, 2:630-638.
33. Wang J. Anal. Chim. Acta 2004, 507:3-10.
34. Tennico Y.H., Hutanu D., Koesdjojo M.T., Bartel C.M., Remcho V.T. Anal. Chem. 2010, 82:5591-5597.