Sequence-specific detection of short-length DNA via template-dependent surface-hybridization events

Analytical Chemistry

Volumn 82, Issue 17, 2010, Pages 7178-7184

  Cai, Sheng ^a   Lau, Choiwan ^a   Lu, Jianzhong ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DESIGN STRATEGIES; DETECTION ASSAY; DNA BIOSENSORS; DNA DETECTION; HYBRIDIZATION ASSAY; MAGNETIC BEADS; PROOF OF CONCEPT; SELECTIVE DETECTION; SENSITIVE DETECTION; SMALL RNA; SPECIFIC DETECTION; TEMPERATURE PROFILES; THREE-COMPONENT;

ASSAYS; BIOSENSORS; GENES; RNA;

DNA;

DNA;

ARTICLE; CHEMOLUMINESCENCE; DNA MICROARRAY; GENETIC PROCEDURES; MAGNETISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; TEMPERATURE; THERMODYNAMICS;

BASE SEQUENCE; BIOSENSING TECHNIQUES; CHEMILUMINESCENT MEASUREMENTS; DNA; MAGNETICS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TEMPERATURE; THERMODYNAMICS;

EID: 77956232564     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac101892t     Document Type: Article

References (56)

1. Dubertret, B., Calame, M., and Libchaber, A. J. Nat. Biotechnol. 2001, 19, 365-370
2. Li, H. X. and Rothberg, L. J. Anal. Chem. 2004, 76, 5414-5417
3. Nakayama, S., Yan, L., and Sintim, H. O. J. Am. Chem. Soc. 2008, 130, 12560-12561
4. Tyagi, S. and Kramer, F. R. Nat. Biotechnol. 1996, 14, 303-308
5. Hwang, G. T., Seo, Y. J., and Kim, B. H. J. Am. Chem. Soc. 2004, 126, 6528-6529
6. Wang, K. M., Tang, Z. W., Yang, C. Y. J., Kim, Y. M., Fang, X. H., Li, W., Wu, Y. R., Medley, C. D., Cao, Z. H., Li, J., Colon, P., Lin, H., and Tan, W. H. Angew. Chem., Int. Ed. 2009, 48, 856-870
7. Martinez, K., Estevez, M. C., Wu, Y. R., Phillips, J. A., Medley, C. D., and Tan, W. H. Anal. Chem. 2009, 81, 3448-3454
8. Wang, Y. X., Li, J. S., Jin, J. Y., Wang, H., Tang, H. X., Yang, R. H., and Wang, K. M. Anal. Chem. 2009, 81, 9703-9709
9. Gaylord, B. S., Heeger, A. J., and Bazan, G. C. J. Am. Chem. Soc. 2003, 125, 896-900
10. He, F., Feng, F., Duan, X. R., Wang, S., Li, Y. L., and Zhu, D. B. Anal. Chem. 2008, 80, 2239-2243
11. Zheng, W. M. and He, L. J. Am. Chem. Soc. 2009, 131, 3432-3433
12. Patolsky, F., Katz, E., and Willner, I. Angew. Chem., Int. Ed. 2002, 41, 3398-3402
13. Patolsky, F., Weizmann, Y., Katz, E., and Willner, I. Angew. Chem., Int. Ed. 2003, 42, 2372-2376
14. Miao, W. J. and Bard, A. J. Anal. Chem. 2004, 76, 5379-5386
15. Miao, J. R., Cao, Z. J., Zhou, Y., Lau, C. W., and Lu, J. Z. Anal. Chem. 2008, 80, 1606-1613
16. Nam, J. M., Stoeva, S. I., and Mirkin, C. A. J. Am. Chem. Soc. 2004, 126, 5932-5933
17. Yu, C. J., Wan, Y. J., Yowanto, H., Li, J., Tao, C. L., James, M. D., Tan, C. L., Blackburn, G. F., and Meade, T. J. J. Am. Chem. Soc. 2001, 123, 11155-11161
18. Korri-Youssoufi, H., Garnier, F., Srivastava, P., Godillot, P., and Yassar, A. J. Am. Chem. Soc. 1997, 119, 7388-7389
19. Le Floch, F., Ho, H. A., Harding-Lepage, P., Bedard, M., Neagu-Plesu, R., and Leclerc, M. Adv. Mater. 2005, 17, 1251-1254
20. Patolsky, F., Lichtenstein, A., and Willner, I. Nat. Biotechnol. 2001, 19, 253-257
21. Kim, E., Kim, K., Yang, H., Kim, Y. T., and Kwak, J. Anal. Chem. 2003, 75, 5665-5672
22. Li, Z., Chen, Y., Li, X., Kamins, T. I., Nauka, K., and Williams, R. S. Nano Lett. 2004, 4, 245-247
23. Patolsky, F., Lichtenstein, A., and Willner, I. Angew. Chem., Int. Ed. 2000, 39, 940-943
24. Esch, M. B., Baeumner, A. J., and Durst, R. A. Anal. Chem. 2001, 73, 3162-3167
25. Gunnarsson, A., Sjovall, P., and Hook, F. Nano Lett. 2010, 10, 732-737
26. Aslan, K., Huang, J., Wilson, G. M., and Geddes, C. D. J. Am. Chem. Soc. 2006, 128, 4206-4207
27. Cissell, K. A., Rahimi, Y., Shrestha, S., Hunt, E. A., and Deo, S. K. Anal. Chem. 2008, 80, 2319-2325
28. Li, J. S., Schachermeyer, S., Wang, Y., Yin, Y. D., and Zhong, W. W. Anal. Chem. 2009, 81, 9723-9729
29. Cheng, Y. Q., Zhang, X., Li, Z. P., Jiao, X. X., Wang, Y. C., and Zhang, Y. L. Angew. Chem., Int. Ed. 2009, 48, 3268-3272
30. Wetmur, J. G. Annu. Rev. Biophys. Bioeng. 1976, 5, 337-361
31. Kool, E. T. Annu. Rev. Biophys. Biomol. Struct. 2001, 30, 1-22
32. O'Meara, D., Nilsson, P., Nygren, P. A., Uhlen, M., and Lundeberg, J. Anal. Biochem. 1998, 255, 195-203
33. Petersheim, M. and Turner, D. H. Biochemistry 1983, 22, 256-263
34. Khrapko, K. R., Lysov, Y. P., Khorlyn, A. A., Shick, V. V., Florentiev, V. L., and Mirzabekov, A. D. FEBS Lett. 1989, 256, 118-122
35. Yuan, B. F., Zhuang, X. Y., Hao, Y. H., and Tan, Z. Chem. Commun. 2008, 6600-6602
36. Yakovchuk, P., Protozanova, E., and Frank-Kamenetskii, M. D. Nucleic Acids Res. 2006, 34, 564-574
37. Poehlmann, C. and Sprinzl, M. Anal. Chem. 2010, 82, 4434-4440
38. Allawi, H. T. and SantaLucia, J. Biochemistry 1998, 37, 9435-9444
39. Peyret, N., Seneviratne, P. A., Allawi, H. T., and SantaLucia, J. Biochemistry 1999, 38, 3468-3477
40. Dequaire, M. and Heller, A. Anal. Chem. 2002, 74, 4370-4377
41. Lehr, H. P., Reimann, M., Brandenburg, A., Sulz, G., and Klapproth, H. Anal. Chem. 2003, 75, 2414-2420
42. Zhao, X. J., Tapec-Dytioco, R., and Tan, W. H. J. Am. Chem. Soc. 2003, 125, 11474-11475
43. Steemers, F. J., Ferguson, J. A., and Walt, D. R. Nat. Biotechnol. 2000, 18, 91-94
44. Shlyahovsky, B., Pavlov, V., Kaganovsky, L., and Willner, I. Angew. Chem., Int. Ed. 2006, 45, 4815-4819
45. Reynolds, R. A., Mirkin, C. A., and Letsinger, R. L. J. Am. Chem. Soc. 2000, 122, 3795-3796
46. Xu, W., Xue, X. J., Li, T. H., Zeng, H. Q., and Liu, X. G. Angew. Chem., Int. Ed. 2009, 48, 6849-6852
47. Hong, M., Zhou, X., Lu, Z. Q., and Zhu, J. Angew. Chem., Int. Ed. 2009, 48, 9503-9506
48. Cao, Y. W. C., Jin, R. C., and Mirkin, C. A. Science 2002, 297, 1536-1540
49. Du, B. A., Li, Z. P., and Liu, C. H. Angew. Chem., Int. Ed. 2006, 45, 8022-8025
50. Endo, T., Kerman, K., Nagatani, N., Takamura, Y., and Tamiya, E. Anal. Chem. 2005, 77, 6976-6984
51. Taton, T. A., Lu, G., and Mirkin, C. A. J. Am. Chem. Soc. 2001, 123, 5164-5165
52. Merkoci, A., Aldavert, M., Tarrason, G., Eritja, R., and Alegret, S. Anal. Chem. 2005, 77, 6500-6503
53. Zhou, X. C., O'Shea, S. J., and Li, S. F. Y. Chem. Commun. 2000, 953-954
54. Fan, A. P., Lau, C. W., and Lu, J. Z. Analyst 2008, 133, 219-225
55. Pavlov, V., Xiao, Y., Gill, R., Dishon, A., Kotler, M., and Willner, I. Anal. Chem. 2004, 76, 2152-2156
56. Gill, R., Polsky, R., and Willner, I. Small 2006, 2, 1037-1041