메뉴 건너뛰기




Volumn 27, Issue 7, 2009, Pages 652-658

Quantification of the yeast transcriptome by single-molecule sequencing

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE METHODS; EXPRESSION PROFILING; FLOW CELLS; FOUR-ORDER; GENETIC ANALYSIS; HIGH-THROUGHPUT; QUANTITATIVE MEASUREMENT; SACCHAROMYCES CEREVISIAE STRAINS; SAMPLE PREPARATION; SAMPLE PREPARATION PROCEDURE; SINGLE-MOLECULE; TRANSCRIPTOME;

EID: 67650500019     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.1551     Document Type: Article
Times cited : (148)

References (25)
  • 1
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart, D.J. & Winzeler, E.A. Genomics, gene expression and DNA arrays. Nature 405, 827-836 (2000).
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 2
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill, G.A. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32 Suppl, 490-495 (2002).
    • (2002) Nat. Genet , vol.32 , Issue.SUPPL. , pp. 490-495
    • Churchill, G.A.1
  • 4
    • 0034130561 scopus 로고    scopus 로고
    • Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
    • Brenner, S. et al. Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol. 18, 630-634 (2000).
    • (2000) Nat Biotechnol , vol.18 , pp. 630-634
    • Brenner, S.1
  • 5
    • 0036246030 scopus 로고    scopus 로고
    • Using the transcriptome to annotate the genome
    • Saha, S. et al. Using the transcriptome to annotate the genome. Nat. Biotechnol. 20, 508-512 (2002).
    • (2002) Nat. Biotechnol , vol.20 , pp. 508-512
    • Saha, S.1
  • 6
    • 9144233601 scopus 로고    scopus 로고
    • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
    • Shiraki, T. et al. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc. Natl. Acad. Sci. USA 100, 15776-15781 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 15776-15781
    • Shiraki, T.1
  • 7
    • 4444308856 scopus 로고    scopus 로고
    • 5′-end SAGE for the analysis of transcriptional start sites
    • Hashimoto, S. et al. 5′-end SAGE for the analysis of transcriptional start sites. Nat. Biotechnol. 22, 1146-1149 (2004).
    • (2004) Nat. Biotechnol , vol.22 , pp. 1146-1149
    • Hashimoto, S.1
  • 8
    • 34250201129 scopus 로고    scopus 로고
    • Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy
    • Kim, J.B. et al. Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. Science 316, 1481-1484 (2007).
    • (2007) Science , vol.316 , pp. 1481-1484
    • Kim, J.B.1
  • 9
    • 33746981831 scopus 로고    scopus 로고
    • Analysis of tag-position bias in MPSS technology
    • Chen, J. & Rattray, M. Analysis of tag-position bias in MPSS technology. BMC Genomics 7, 77 (2006).
    • (2006) BMC Genomics , vol.7 , pp. 77
    • Chen, J.1    Rattray, M.2
  • 10
    • 33746207761 scopus 로고    scopus 로고
    • Sequence biases in large scale gene expression profiling data
    • Siddiqui, A.S. et al. Sequence biases in large scale gene expression profiling data. Nucleic Acids Res. 34, e83 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Siddiqui, A.S.1
  • 11
    • 38749113349 scopus 로고    scopus 로고
    • Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework
    • Gilchrist, M.A., Qin, H. & Zaretzki, R. Modeling SAGE tag formation and its effects on data interpretation within a Bayesian framework. BMC Bioinformatics 8, 403 (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 403
    • Gilchrist, M.A.1    Qin, H.2    Zaretzki, R.3
  • 12
    • 36849057743 scopus 로고    scopus 로고
    • Deep analysis of cellular transcriptomes - Long SAGE versus classic MPSS
    • Hene, L. et al. Deep analysis of cellular transcriptomes - Long SAGE versus classic MPSS. BMC Genomics 8, 333 (2007).
    • (2007) BMC Genomics , vol.8 , pp. 333
    • Hene, L.1
  • 13
    • 33646571251 scopus 로고    scopus 로고
    • Minimizing loss of sequence information in SAGE ditags by modulating the temperature dependent 3′ → 5′exonuclease activity of DNA polymerases on 3′-terminal isoheptyl amino groups
    • So, A.P., Turner, R.F. & Haynes, C.A. Minimizing loss of sequence information in SAGE ditags by modulating the temperature dependent 3′ → 5′exonuclease activity of DNA polymerases on 3′-terminal isoheptyl amino groups. Biotechnol. Bioeng. 94, 54-65 (2006).
    • (2006) Biotechnol. Bioeng , vol.94 , pp. 54-65
    • So, A.P.1    Turner, R.F.2    Haynes, C.A.3
  • 14
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U. et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-1349 (2008).
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1
  • 16
    • 46249103973 scopus 로고    scopus 로고
    • Stem cell transcriptome profiling via massive-scale mRNA sequencing
    • Cloonan, N. et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5, 613-619 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 613-619
    • Cloonan, N.1
  • 17
    • 65649126066 scopus 로고    scopus 로고
    • Transcript length bias in RNA-seq data confounds systems biology
    • Oshlack, A. & Wakefield, M.J. Transcript length bias in RNA-seq data confounds systems biology. Biol. Direct 4, 14 (2009).
    • (2009) Biol. Direct , vol.4 , pp. 14
    • Oshlack, A.1    Wakefield, M.J.2
  • 18
    • 41749104588 scopus 로고    scopus 로고
    • Single-molecule DNA sequencing of a viral genome
    • Harris, T.D. et al. Single-molecule DNA sequencing of a viral genome. Science 320, 106-109 (2008).
    • (2008) Science , vol.320 , pp. 106-109
    • Harris, T.D.1
  • 19
    • 68349095077 scopus 로고    scopus 로고
    • Novel virtual terminator nucleotides for next generation DNA sequencing
    • in the press
    • Bowers, J. et al. Novel virtual terminator nucleotides for next generation DNA sequencing. Nat. Methods (in the press).
    • Nat. Methods
    • Bowers, J.1
  • 20
    • 33750482575 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae S288C genome annotation: A working hypothesis
    • Fisk, D.G. et al. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23, 857-865 (2006).
    • (2006) Yeast , vol.23 , pp. 857-865
    • Fisk, D.G.1
  • 21
    • 20144384163 scopus 로고    scopus 로고
    • Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE
    • Zhang, Z. & Dietrich, F.S. Mapping of transcription start sites in Saccharomyces cerevisiae using 5′ SAGE. Nucleic Acids Res. 33, 2838-2851 (2005).
    • (2005) Nucleic Acids Res , vol.33 , pp. 2838-2851
    • Zhang, Z.1    Dietrich, F.S.2
  • 22
    • 33845223334 scopus 로고    scopus 로고
    • A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
    • Miura, F. et al. A large-scale full-length cDNA analysis to explore the budding yeast transcriptome. Proc. Natl. Acad. Sci. USA 103, 17846-17851 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 17846-17851
    • Miura, F.1
  • 23
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent, WJ. et al. The human genome browser at UCSC. Genome Res. 12, 996-1006 (2002).
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 24
    • 33846811598 scopus 로고    scopus 로고
    • High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing
    • Juneau, K., Palm, C., Miranda, M. & Davis, R.W. High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing. Proc. Natl. Acad. Sci. USA 104, 1522-1527 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1522-1527
    • Juneau, K.1    Palm, C.2    Miranda, M.3    Davis, R.W.4
  • 25
    • 0032567081 scopus 로고    scopus 로고
    • Dissecting the regulatory circuitry of a eukaryotic genome
    • Holstege, FC. et al. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95, 717-728 (1998).
    • (1998) Cell , vol.95 , pp. 717-728
    • Holstege, F.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.