메뉴 건너뛰기




Volumn 40, Issue D1, 2012, Pages

SitEx: A computer system for analysis of projections of protein functional sites on eukaryotic genes

Author keywords

[No Author keywords available]

Indexed keywords

POLYPEPTIDE; PROTEIN; PROTEOME;

EID: 84862239870     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1187     Document Type: Article
Times cited : (4)

References (26)
  • 1
    • 0035815113 scopus 로고    scopus 로고
    • Evolution of function in protein superfamilies, from a structural perspective
    • Todd,A.E., Orengo,C.A. and Thornton,J.M. (2001) Evolution of function in protein superfamilies, from a structural perspective. J. Mol. Biol., 307, 1113-1143.
    • (2001) J. Mol. Biol. , vol.307 , pp. 1113-1143
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3
  • 2
    • 0036851263 scopus 로고    scopus 로고
    • Signatures of domain shuffling in the human genome
    • Kaessmann,H., Zollner,S., Nekrutenko,A. and Li,W. (2002) Signatures of domain shuffling in the human genome. Genome Res., 12, 1642-1650.
    • (2002) Genome Res. , vol.12 , pp. 1642-1650
    • Kaessmann, H.1    Zollner, S.2    Nekrutenko, A.3    Li, W.4
  • 5
  • 8
    • 0037246401 scopus 로고    scopus 로고
    • XdomView: Protein domain and exon position visualization
    • Vivek,G., Tan,T.W. and Ranganathan,S. (2003) XdomView: protein domain and exon position visualization. Bioinformatics, 19, 159-160.
    • (2003) Bioinformatics , vol.19 , pp. 159-160
    • Vivek, G.1    Tan, T.W.2    Ranganathan, S.3
  • 9
    • 4444255296 scopus 로고    scopus 로고
    • Structural exon database, SEDB, mapping exon boundaries on multiple protein structures
    • Leslin,C.M., Abyzov,A. and Ilyin,V.A. (2004) Structural exon database, SEDB, mapping exon boundaries on multiple protein structures. Bioinformatics, 20, 1801-1803.
    • (2004) Bioinformatics , vol.20 , pp. 1801-1803
    • Leslin, C.M.1    Abyzov, A.2    Ilyin, V.A.3
  • 10
    • 58149181370 scopus 로고    scopus 로고
    • ExDom: An integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes
    • Bhasi,A., Philip,P., Manikandan,V. and Senapathy,P. (2009) ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. Nucleic Acids Res., 37, D703-D711.
    • (2009) Nucleic Acids Res. , vol.37
    • Bhasi, A.1    Philip, P.2    Manikandan, V.3    Senapathy, P.4
  • 11
    • 0345864027 scopus 로고    scopus 로고
    • The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
    • Porter,C.T., Bartlett,G.J. and Thornton,J.M. (2004) The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res., 32, D129-D133.
    • (2004) Nucleic Acids Res. , vol.32
    • Porter, C.T.1    Bartlett, G.J.2    Thornton, J.M.3
  • 13
    • 33644876699 scopus 로고    scopus 로고
    • SitesBase: A database for structure-based protein-ligand binding site comparisons
    • Gold,N.D. and Jackson,R.M. (2006) SitesBase: a database for structure-based protein-ligand binding site comparisons. Nucleic Acids Res, 34, D231-D234.
    • (2006) Nucleic Acids Res , vol.34
    • Gold, N.D.1    Jackson, R.M.2
  • 16
    • 3242890667 scopus 로고    scopus 로고
    • PDBSiteScan: A program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins
    • Ivanisenko,V.A., Pintus,S.S., Grigorovich,D.A. and Kolchanov,N.A. (2004) PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res., 32, W549-W554.
    • (2004) Nucleic Acids Res. , vol.32
    • Ivanisenko, V.A.1    Pintus, S.S.2    Grigorovich, D.A.3    Kolchanov, N.A.4
  • 17
    • 0035783063 scopus 로고    scopus 로고
    • Fold change in evolution of protein structures
    • Grishin,N.V. (2001) Fold change in evolution of protein structures. J. Struct. Biol., 134, 167-185.
    • (2001) J. Struct. Biol. , vol.134 , pp. 167-185
    • Grishin, N.V.1
  • 18
    • 0017377367 scopus 로고
    • Structural convergence during protein evolution
    • Salemme,F.R., Miller,M.D. and Jordan,S.R. (1977) Structural convergence during protein evolution. PNAS, 74, 2820-2824.
    • (1977) PNAS , vol.74 , pp. 2820-2824
    • Salemme, F.R.1    Miller, M.D.2    Jordan, S.R.3
  • 22
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 24
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel,E. and Henrick,K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Cryst., D6, 2256-2268.
    • (2004) Acta Cryst. , vol.D6 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 25
    • 0031715982 scopus 로고    scopus 로고
    • Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
    • Shindyalov,I.N. and Bourne,P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
    • (1998) Protein Eng. , vol.11 , pp. 739-747
    • Shindyalov, I.N.1    Bourne, P.E.2
  • 26
    • 33746124556 scopus 로고    scopus 로고
    • Biomolecules in the computer: Jmol to the rescue
    • Herraez,A. (2006) Biomolecules in the computer: Jmol to the rescue. Biochem. Mol. Biol. Educ., 34, 255-261.
    • (2006) Biochem. Mol. Biol. Educ. , vol.34 , pp. 255-261
    • Herraez, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.