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Volumn 37, Issue SUPPL. 1, 2009, Pages

ExDom: An integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 58149181370     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn746     Document Type: Article
Times cited : (9)

References (31)
  • 2
    • 33644872767 scopus 로고    scopus 로고
    • Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
    • Marsden,R.L., Lee,D., Maibaum,M., Yeats,C. and Orengo,C.A. (2006) Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space. Nucleic Acids Res., 34, 1066-1080.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1066-1080
    • Marsden, R.L.1    Lee, D.2    Maibaum, M.3    Yeats, C.4    Orengo, C.A.5
  • 3
    • 34248149860 scopus 로고    scopus 로고
    • Conserved intron positions in ancient protein modules
    • de Roos,A.D. (2007) Conserved intron positions in ancient protein modules. Biol. Direct., 2, 7.
    • (2007) Biol. Direct , vol.2 , pp. 7
    • de Roos, A.D.1
  • 4
    • 13744252347 scopus 로고    scopus 로고
    • Significant expansion of exon-bordering protein domains during animal proteome evolution
    • Liu,M., Walch,H., Wu,S. and Grigoriev,A. (2005) Significant expansion of exon-bordering protein domains during animal proteome evolution. Nucleic Acids Res., 33, 95-105.
    • (2005) Nucleic Acids Res , vol.33 , pp. 95-105
    • Liu, M.1    Walch, H.2    Wu, S.3    Grigoriev, A.4
  • 5
    • 33847741060 scopus 로고    scopus 로고
    • The origins of polypeptide domains
    • Schmidt,E.E. and Davies,C.J. (2007) The origins of polypeptide domains. Bioessays, 29, 262-270.
    • (2007) Bioessays , vol.29 , pp. 262-270
    • Schmidt, E.E.1    Davies, C.J.2
  • 7
    • 33644847698 scopus 로고    scopus 로고
    • The evolution of spliceosomal introns: Patterns, puzzles and progress
    • Roy,S.W. and Gilbert,W. (2006) The evolution of spliceosomal introns: patterns, puzzles and progress. Nat. Rev. Genet., 7, 211-221.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 211-221
    • Roy, S.W.1    Gilbert, W.2
  • 11
    • 33846057724 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2007) NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65.
    • (2007) Nucleic Acids Res , vol.35
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 12
    • 38549176691 scopus 로고    scopus 로고
    • Flicek,P., Aken,B.L., Beal,K., Ballester,B.M., Caccamo,M., Chen,Y., Clarke,L., Coates,G., Cunningham,F., Cutts,T. et al. (2008) Ensembl 2008. Nucleic Acids Res., 36, D707-D714.
    • Flicek,P., Aken,B.L., Beal,K., Ballester,B.M., Caccamo,M., Chen,Y., Clarke,L., Coates,G., Cunningham,F., Cutts,T. et al. (2008) Ensembl 2008. Nucleic Acids Res., 36, D707-D714.
  • 13
    • 4444255296 scopus 로고    scopus 로고
    • Structural exon database, SEDB, mapping exon boundaries on multiple protein structures
    • Leslin,C.M., Abyzov,A. and Ilyin,V.A. (2004) Structural exon database, SEDB, mapping exon boundaries on multiple protein structures. Bioinformatics, 20, 1801-1803.
    • (2004) Bioinformatics , vol.20 , pp. 1801-1803
    • Leslin, C.M.1    Abyzov, A.2    Ilyin, V.A.3
  • 14
    • 0037246401 scopus 로고    scopus 로고
    • XdomView: Protein domain and exon position visualization
    • Vivek,G., Tan,T.W. and Ranganathan,S. (2003) XdomView: Protein domain and exon position visualization. Bioinformatics, 19, 159-160.
    • (2003) Bioinformatics , vol.19 , pp. 159-160
    • Vivek, G.1    Tan, T.W.2    Ranganathan, S.3
  • 18
    • 48449088845 scopus 로고    scopus 로고
    • DAhunter: A web-based server that identifies homologous proteins by comparing domain architecture
    • Lee,B. and Lee,D. (2008) DAhunter: A web-based server that identifies homologous proteins by comparing domain architecture. Nucleic Acids Res., 36, W60-W64.
    • (2008) Nucleic Acids Res , vol.36
    • Lee, B.1    Lee, D.2
  • 19
    • 33846106700 scopus 로고    scopus 로고
    • GeneSpeed: Protein domain organization of the transcriptome
    • Kutchma,A., Quayum,N. and Jensen,J. (2007) GeneSpeed: Protein domain organization of the transcriptome. Nucleic Acids Res., 35, D674-D679.
    • (2007) Nucleic Acids Res , vol.35
    • Kutchma, A.1    Quayum, N.2    Jensen, J.3
  • 20
  • 21
    • 40549098736 scopus 로고    scopus 로고
    • UniProtKB/Swiss-Prot: The manually annotated section of the UniProt KnowledgeBase
    • Boutet,E., Lieberherr,D., Tognolli,M., Schneider,M. and Bairoch,A. (2007) UniProtKB/Swiss-Prot: The manually annotated section of the UniProt KnowledgeBase. Methods Mol. Biol., 406, 89-112.
    • (2007) Methods Mol. Biol , vol.406 , pp. 89-112
    • Boutet, E.1    Lieberherr, D.2    Tognolli, M.3    Schneider, M.4    Bairoch, A.5
  • 23
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet,F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 25
    • 33746124556 scopus 로고    scopus 로고
    • Biomolecules in the Computer: Jmol to the rescue
    • Herráez,A. (2006) Biomolecules in the Computer: Jmol to the rescue. Biochem. Educ., 34, 255-261.
    • (2006) Biochem. Educ , vol.34 , pp. 255-261
    • Herráez, A.1
  • 28
    • 34547869583 scopus 로고    scopus 로고
    • EuSplice: A unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes
    • Bhasi,A., Pandey,R.V., Utharasamy,S.P. and Senapathy,P. (2007) EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes. Bioinformatics, 23, 1815-1823.
    • (2007) Bioinformatics , vol.23 , pp. 1815-1823
    • Bhasi, A.1    Pandey, R.V.2    Utharasamy, S.P.3    Senapathy, P.4
  • 31
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • Gilbert,W. (1978) Why genes in pieces? Nature, 271, 501.
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.