-
1
-
-
0036084361
-
The PROSITE database, its status in 2002
-
Falquet,L., Pagni,M., Bucher,P., Hulo,N., Sigrist,C.J.A., Hofmann,K. and Bairoch,A. (2002) The PROSITE database, its status in 2002. Nucleic Acids Res., 30, 235-238.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 235-238
-
-
Falquet, L.1
Pagni, M.2
Bucher, P.3
Hulo, N.4
Sigrist, C.J.A.5
Hofmann, K.6
Bairoch, A.7
-
2
-
-
0032483312
-
Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases
-
Fetrow,J.S. and Skolnick,J. (1998) Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to glutaredoxins/thioredoxins and T1 ribonucleases. J. Mol. Biol., 281, 949-68.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 949-968
-
-
Fetrow, J.S.1
Skolnick, J.2
-
3
-
-
0033033274
-
DOMPLOT: A program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts
-
Todd,A.E., Orengo,C.A. and Thornton,J.M. (1999) DOMPLOT: a program to generate schematic diagrams of the structural domain organization within proteins, annotated by ligand contacts. Protein Eng., 12, 375-379.
-
(1999)
Protein Eng.
, vol.12
, pp. 375-379
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
4
-
-
0031000649
-
An evolutionary treasure: Unification of a broad set of amidohydrolases related to urease
-
Holm,L. and Sander.C. (1997) An evolutionary treasure: unification of a broad set of amidohydrolases related to urease. Proteins, 28, 72-82.
-
(1997)
Proteins
, vol.28
, pp. 72-82
-
-
Holm, L.1
Sander, C.2
-
5
-
-
0042622410
-
WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures
-
Liang,M.P., Banatao,D.R., Klein,T.E., Brutlag,D.L. and Altman,R.B. (2003) WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures. Nucleic Acids Res., 31, 3324-3327.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3324-3327
-
-
Liang, M.P.1
Banatao, D.R.2
Klein, T.E.3
Brutlag, D.L.4
Altman, R.B.5
-
6
-
-
0037930733
-
Using structural motif templates to identify proteins with DNA binding function
-
Jones,S., Barker,J.A., Nobeli,I. and Thornton,J.M. (2003) Using structural motif templates to identify proteins with DNA binding function. Nucleic Acids Res., 31, 2811-2823.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2811-2823
-
-
Jones, S.1
Barker, J.A.2
Nobeli, I.3
Thornton, J.M.4
-
7
-
-
0042674397
-
Using a neural network and spatial clustering to predict the location of active sites in enzymes
-
Gutteridge,A., Bartlett,G.J. and Thornton,J.M. (2003) Using a neural network and spatial clustering to predict the location of active sites in enzymes. J. Mol. Biol., 330, 719-734.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 719-734
-
-
Gutteridge, A.1
Bartlett, G.J.2
Thornton, J.M.3
-
8
-
-
0030724039
-
TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
-
Wallace,A.C., Borkakoti,N. and Thornton,J.M. (1997) TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites. Protein Sci., 6, 2308-2323.
-
(1997)
Protein Sci.
, vol.6
, pp. 2308-2323
-
-
Wallace, A.C.1
Borkakoti, N.2
Thornton, J.M.3
-
9
-
-
0027967593
-
A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures
-
Artymiuk,P.J., Poirrette,A.R., Grindley,H.M., Rice,D.W. and Willett,P. (1994) A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures. J. Mol. Biol., 243, 327-344.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 327-344
-
-
Artymiuk, P.J.1
Poirrette, A.R.2
Grindley, H.M.3
Rice, D.W.4
Willett, P.5
-
11
-
-
0037436339
-
Relibase: Design and development of a database for comprehensive analysis of protein-ligand interactions
-
Hendlich,M., Bergner,A., Gunther,J. and Klebe,G. (2003) Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions. J. Mol. Biol., 326, 607-620.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 607-620
-
-
Hendlich, M.1
Bergner, A.2
Gunther, J.3
Klebe, G.4
-
12
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
13
-
-
0035882570
-
Prediction of protein interaction sites from sequence profile and residue neighbor list
-
Zhou,H.X. and Shan,Y. (2001) Prediction of protein interaction sites from sequence profile and residue neighbor list. Proteins, 44, 336-343.
-
(2001)
Proteins
, vol.44
, pp. 336-343
-
-
Zhou, H.X.1
Shan, Y.2
-
14
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov,I.N. and Bourne,P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-741.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-741
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
15
-
-
0031697713
-
A geometric algorithm to find small but highly similar 3D substructures in proteins
-
Pennec,X. and Ayache,N. (1998) A geometric algorithm to find small but highly similar 3D substructures in proteins. Bioinforntatics, 14, 516-522.
-
(1998)
Bioinformatics
, vol.14
, pp. 516-522
-
-
Pennec, X.1
Ayache, N.2
-
16
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch,W. (1976) A solution for the best rotation to relate two sets of vectors. Acta Cryst., A32, 922-923.
-
(1976)
Acta Cryst.
, vol.A32
, pp. 922-923
-
-
Kabsch, W.1
-
17
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang,G. and Dunbrack,R.L.,Jr (2003) PISCES: a protein sequence culling server. Bioinformatics, 19, 1589-1591.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack Jr., R.L.2
-
18
-
-
0037428241
-
Mutations in the DJ-1 gene associated with autosomal recessive early-onset Parkinsonism
-
Bonifati,V., Rizzu,P., van Baren,M.J., Schaap,O., Breedveld,G.J., Krieger,E., Dekker,M.C., Squitieri,F., Ibanez,P., Joosse,M. et al. (2003) Mutations in the DJ-1 gene associated with autosomal recessive early-onset Parkinsonism. Science, 299, 256-259.
-
(2003)
Science
, vol.299
, pp. 256-259
-
-
Bonifati, V.1
Rizzu, P.2
van Baren, M.J.3
Schaap, O.4
Breedveld, G.J.5
Krieger, E.6
Dekker, M.C.7
Squitieri, F.8
Ibanez, P.9
Joosse, M.10
-
19
-
-
0042063899
-
Crystal structure of DJ-1/RS and implication on familial Parkinson's disease
-
Huai,Q., Sun,Y., Wang,H., Chin,L.S., Li,L., Robinson,H. and Ke,H. (2003) Crystal structure of DJ-1/RS and implication on familial Parkinson's disease. FEBS Lett., 549, 171-175.
-
(2003)
FEBS Lett.
, vol.549
, pp. 171-175
-
-
Huai, Q.1
Sun, Y.2
Wang, H.3
Chin, L.S.4
Li, L.5
Robinson, H.6
Ke, H.7
-
20
-
-
0033103726
-
Identification and characterization of a novel protein that regulates RNA-protein interaction
-
Hod,Y., Pentyala,S.N., Whyard,T.C. and El-Maghrabi,M.R. (1999) Identification and characterization of a novel protein that regulates RNA-protein interaction. J. Cell Biochem., 72, 435-444.
-
(1999)
J. Cell Biochem.
, vol.72
, pp. 435-444
-
-
Hod, Y.1
Pentyala, S.N.2
Whyard, T.C.3
El-Maghrabi, M.R.4
-
21
-
-
0028897490
-
How potassium affects the activity of the molecular chaperone Hsc70. I. Potassium is required for optimal ATPase activity
-
O'Brien,M.C. and McKay,D.B. (1995) How potassium affects the activity of the molecular chaperone Hsc70. I. Potassium is required for optimal ATPase activity. J. Biol. Chem., 270, 2247-2250.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2247-2250
-
-
O'Brien, M.C.1
McKay, D.B.2
-
22
-
-
0029117821
-
Monovalent metal ions play an essential role in catalysis and intersubunit communication in the tryptophan synthase bienzyme complex
-
Woehl,E.U. and Dunn,M.F. (1995) Monovalent metal ions play an essential role in catalysis and intersubunit communication in the tryptophan synthase bienzyme complex. Biochemistry, 34, 9466-9476.
-
(1995)
Biochemistry
, vol.34
, pp. 9466-9476
-
-
Woehl, E.U.1
Dunn, M.F.2
-
23
-
-
0014947813
-
Enzymes activated by monovalent cations
-
Suelter,C.H. (1970) Enzymes activated by monovalent cations. Science, 168, 789-795.
-
(1970)
Science
, vol.168
, pp. 789-795
-
-
Suelter, C.H.1
-
25
-
-
0029014036
-
An allosteric switch controls the procoagulant and anticoagulant activities of thrombin
-
Dang,Q.D., Vindigni,A. and Di Cera,E. (1995) An allosteric switch controls the procoagulant and anticoagulant activities of thrombin. Proc. Natl Acad. Sci., USA, 92, 5977-5981.
-
(1995)
Proc. Natl. Acad. Sci., USA
, vol.92
, pp. 5977-5981
-
-
Dang, Q.D.1
Vindigni, A.2
Di Cera, E.3
-
26
-
-
0029090336
-
+ x binding site of thrombin
-
+ x binding site of thrombin. J. Biol. Chem., 270, 22089-22092.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22089-22092
-
-
Di Cera, E.1
Guinto, E.R.2
Vindigni, A.3
Dang, Q.D.4
Ayala, Y.M.5
Wuyi, M.6
Tulinsky, A.7
-
27
-
-
0141484541
-
Thrombin interactions
-
Di Cera,E. (2003) Thrombin interactions. Chest, 124, 11S-17S.
-
(2003)
Chest
, vol.124
-
-
Di Cera, E.1
|