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Volumn 40, Issue D1, 2012, Pages

VIRsiRNAdb: A curated database of experimentally validated viral siRNA/shRNA

Author keywords

[No Author keywords available]

Indexed keywords

SHORT HAIRPIN RNA; SMALL INTERFERING RNA; VIRUS RNA;

EID: 84862160087     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1147     Document Type: Article
Times cited : (45)

References (46)
  • 2
    • 40849097775 scopus 로고    scopus 로고
    • Rates of evolutionary change in viruses: Patterns and determinants
    • DOI 10.1038/nrg2323, PII NRG2323
    • Duffy,S., Shackelton,L.A. and Holmes,E.C. (2008) Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genetics, 9, 267-276. (Pubitemid 351399833)
    • (2008) Nature Reviews Genetics , vol.9 , Issue.4 , pp. 267-276
    • Duffy, S.1    Shackelton, L.A.2    Holmes, E.C.3
  • 3
    • 77957886377 scopus 로고    scopus 로고
    • Harnessing RNA interference for the treatment of viral infections
    • Arbuthnot,P. (2010) Harnessing RNA interference for the treatment of viral infections. Drug News Perspect., 23, 341-350.
    • (2010) Drug News Perspect. , vol.23 , pp. 341-350
    • Arbuthnot, P.1
  • 4
    • 36849042601 scopus 로고    scopus 로고
    • RNA interference against viruses: Strike and counterstrike
    • DOI 10.1038/nbt1369, PII NBT1369
    • Haasnoot,J., Westerhout,E.M. and Berkhout,B. (2007) RNA interference against viruses: strike and counterstrike. Nat. Biotechnol., 25, 1435-1443. (Pubitemid 350233142)
    • (2007) Nature Biotechnology , vol.25 , Issue.12 , pp. 1435-1443
    • Haasnoot, J.1    Westerhout, E.M.2    Berkhout, B.3
  • 6
    • 79954580272 scopus 로고    scopus 로고
    • Current prospects for RNA interference-based therapies
    • Davidson,B.L. and McCray,P.B. Jr (2011) Current prospects for RNA interference-based therapies. Nat. Rev. Genet., 12, 329-340.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 329-340
    • Davidson, B.L.1    McCray Jr., P.B.2
  • 7
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in caenorhabditis elegans
    • DOI 10.1038/35888
    • Fire,A., Xu,S., Montgomery,M.K., Kostas,S.A., Driver,S.E. and Mello,C.C. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 391, 806-811. (Pubitemid 28099681)
    • (1998) Nature , vol.391 , Issue.6669 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 9
    • 22144489833 scopus 로고    scopus 로고
    • RNAi: The nuts and bolts of the RISC machine
    • Filipowicz,W. (2005) RNAi: the nuts and bolts of the RISC machine. Cell, 122, 17-20.
    • (2005) Cell , vol.122 , pp. 17-20
    • Filipowicz, W.1
  • 10
    • 61549117889 scopus 로고    scopus 로고
    • Nucleic acids-based therapeutics in the battle against pathogenic viruses
    • Haasnoot,J. and Berkhout,B. (2009) Nucleic acids-based therapeutics in the battle against pathogenic viruses. Handb. Exp. Pharmacol., 189, 243-263.
    • (2009) Handb. Exp. Pharmacol. , vol.189 , pp. 243-263
    • Haasnoot, J.1    Berkhout, B.2
  • 11
    • 33645162202 scopus 로고    scopus 로고
    • Antiviral RNAi therapy: Emerging approaches for hitting a moving target
    • Leonard,J.N. and Schaffer,D.V. (2006) Antiviral RNAi therapy: emerging approaches for hitting a moving target. Gene Ther., 13, 532-540.
    • (2006) Gene Ther. , vol.13 , pp. 532-540
    • Leonard, J.N.1    Schaffer, D.V.2
  • 13
    • 0141755412 scopus 로고    scopus 로고
    • Inhibition of HBV replication by siRNA in a stable HBV-producing cell line
    • DOI 10.1053/jhep.2003.50416
    • Konishi,M., Wu,C.H. and Wu,G.Y. (2003) Inhibition of HBV replication by siRNA in a stable HBV-producing cell line. Hepatology, 38, 842-850. (Pubitemid 37221667)
    • (2003) Hepatology , vol.38 , Issue.4 , pp. 842-850
    • Konishi, M.1    Wu, C.H.2    Wu, G.Y.3
  • 14
    • 23144443599 scopus 로고    scopus 로고
    • Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs
    • DOI 10.1038/sj.cr.7290286
    • Shi,Y., Yang,D.H., Xiong,J., Jia,J., Huang,B. and Jin,Y.X. (2005) Inhibition of genes expression of SARS coronavirus by synthetic small interfering RNAs. Cell Res., 15, 193-200. (Pubitemid 41653943)
    • (2005) Cell Research , vol.15 , Issue.3 , pp. 193-200
    • Shi, Y.1    Yang, D.H.2    Xiong, J.3    Jia, J.4    Huang, B.5    Jin, Y.X.6
  • 15
    • 6044248871 scopus 로고    scopus 로고
    • Therapeutic potential of RNA interference
    • Stevenson,M. (2004) Therapeutic potential of RNA interference. N. Engl. J. Med., 351, 1772-1777.
    • (2004) N. Engl. J. Med. , vol.351 , pp. 1772-1777
    • Stevenson, M.1
  • 16
    • 70349316690 scopus 로고    scopus 로고
    • Therapeutic applications of RNAi for silencing virus replication
    • Tripp,R.A. and Tompkins,S.M. (2009) Therapeutic applications of RNAi for silencing virus replication. Methods Mol. Biol., 555, 43-61.
    • (2009) Methods Mol. Biol. , vol.555 , pp. 43-61
    • Tripp, R.A.1    Tompkins, S.M.2
  • 17
    • 39449092763 scopus 로고    scopus 로고
    • SiRNA pool targeting different sites of human hepatitis B surface antigen efficiently inhibits HBV infection
    • DOI 10.1080/10611860701878750, PII 790597198
    • Chen,Y. and Mahato,R.I. (2008) siRNA pool targeting different sites of human hepatitis B surface antigen efficiently inhibits HBV infection. J. Drug Target., 16, 140-148. (Pubitemid 351266550)
    • (2008) Journal of Drug Targeting , vol.16 , Issue.2 , pp. 140-148
    • Chen, Y.1    Mahato, R.2
  • 18
    • 39849108343 scopus 로고    scopus 로고
    • Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition
    • ter Brake,O., t Hooft,K., Liu,Y.P., Centlivre,M., von Eije,K.J. and Berkhout,B. (2008) Lentiviral vector design for multiple shRNA expression and durable HIV-1 inhibition. Mol. Ther., 16, 557-564.
    • (2008) Mol. Ther. , vol.16 , pp. 557-564
    • Ter Brake, O.1    T Hooft, K.2    Liu, Y.P.3    Centlivre, M.4    Von Eije, K.J.5    Berkhout, B.6
  • 20
    • 70349295861 scopus 로고    scopus 로고
    • RNA interference technologies and therapeutics: From basic research to products
    • Lopez-Fraga,M., Martinez,T. and Jimenez,A. (2009) RNA interference technologies and therapeutics: from basic research to products. Biodrugs, 23, 305-332.
    • (2009) Biodrugs , vol.23 , pp. 305-332
    • Lopez-Fraga, M.1    Martinez, T.2    Jimenez, A.3
  • 21
    • 83555173316 scopus 로고    scopus 로고
    • Antiviral RNAi: Translating science towards therapeutic success
    • August 9 (doi:10.1007/s11095-011-0549-8; epub ahead of print)
    • Shah,P.S. and Schaffer,D.V. (2011) Antiviral RNAi: translating science towards therapeutic success. Pharm. Res, August 9 (doi:10.1007/s11095-011-0549- 8; epub ahead of print).
    • (2011) Pharm. Res
    • Shah, P.S.1    Schaffer, D.V.2
  • 23
    • 44349192034 scopus 로고    scopus 로고
    • The business of RNAi therapeutics
    • Haussecker,D. (2008) The business of RNAi therapeutics. Hum. Gene Ther., 19, 451-462.
    • (2008) Hum. Gene Ther. , vol.19 , pp. 451-462
    • Haussecker, D.1
  • 25
    • 77955608799 scopus 로고    scopus 로고
    • RNA-based gene therapy for HIV with lentiviral vector-modified CD34(+) cells in patients undergoing transplantation for AIDS-related lymphoma
    • DiGiusto,D.L., Krishnan,A., Li,L., Li,H., Li,S., Rao,A., Mi,S., Yam,P., Stinson,S., Kalos,M. et al. (2010) RNA-based gene therapy for HIV with lentiviral vector-modified CD34(+) cells in patients undergoing transplantation for AIDS-related lymphoma. Sci. Transl. Med., 2, 36ra43.
    • (2010) Sci. Transl. Med. , vol.2
    • DiGiusto, D.L.1    Krishnan, A.2    Li, L.3    Li, H.4    Li, S.5    Rao, A.6    Mi, S.7    Yam, P.8    Stinson, S.9    Kalos, M.10
  • 27
    • 13444280430 scopus 로고    scopus 로고
    • HuSiDa - The human siRNA database: An open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells
    • DOI 10.1093/nar/gki131
    • Truss,M., Swat,M., Kielbasa,S.M., Schafer,R., Herzel,H. and Hagemeier,C. (2005) HuSiDa-the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res., 33, D108-D111. (Pubitemid 40207840)
    • (2005) Nucleic Acids Research , vol.33 , Issue.DATABASE ISS.
    • Truss, M.1    Swat, M.2    Kielbasa, S.M.3    Schafer, R.4    Herzel, H.5    Hagemeier, C.6
  • 29
    • 33645822531 scopus 로고    scopus 로고
    • siRecords: An extensive database of mammalian siRNAs with efficacy ratings
    • Ren,Y., Gong,W., Xu,Q., Zheng,X., Lin,D., Wang,Y. and Li,T. (2006) siRecords: an extensive database of mammalian siRNAs with efficacy ratings. Bioinformatics, 22, 1027-1028.
    • (2006) Bioinformatics , vol.22 , pp. 1027-1028
    • Ren, Y.1    Gong, W.2    Xu, Q.3    Zheng, X.4    Lin, D.5    Wang, Y.6    Li, T.7
  • 31
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 35
    • 58749086586 scopus 로고    scopus 로고
    • Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
    • Ui-Tei,K., Naito,Y., Nishi,K., Juni,A. and Saigo,K. (2008) Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect. Nucleic Acids Res., 36, 7100-7109.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 7100-7109
    • Ui-Tei, K.1    Naito, Y.2    Nishi, K.3    Juni, A.4    Saigo, K.5
  • 36
    • 74049124186 scopus 로고    scopus 로고
    • Recognizing and avoiding siRNA off-target effects for target identification and therapeutic application
    • Jackson,A.L. and Linsley,P.S. (2010) Recognizing and avoiding siRNA off-target effects for target identification and therapeutic application. Nature reviews. Drug Discov., 9, 57-67.
    • (2010) Nature Reviews. Drug Discov. , vol.9 , pp. 57-67
    • Jackson, A.L.1    Linsley, P.S.2
  • 38
    • 43349090924 scopus 로고    scopus 로고
    • siRNA specificity searching incorporating mismatch tolerance data
    • DOI 10.1093/bioinformatics/btn121
    • Chalk,A.M. and Sonnhammer,E.L. (2008) siRNA specificity searching incorporating mismatch tolerance data. Bioinformatics, 24, 1316-1317. (Pubitemid 351659633)
    • (2008) Bioinformatics , vol.24 , Issue.10 , pp. 1316-1317
    • Chalk, A.M.1    Sonnhammer, E.L.L.2
  • 39
    • 33747869038 scopus 로고    scopus 로고
    • siVirus: Web-based antiviral siRNA design software for highly divergent viral sequences
    • DOI 10.1093/nar/gkl214
    • Naito,Y., Ui-Tei,K., Nishikawa,T., Takebe,Y. and Saigo,K. (2006) siVirus: web-based antiviral siRNA design software for highly divergent viral sequences. Nucleic Acids Res., 34, W448-W450. (Pubitemid 44529810)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Naito, Y.1    Ui-Tei, K.2    Nishikawa, T.3    Takebe, Y.4    Saigo, K.5
  • 43
    • 18744382144 scopus 로고    scopus 로고
    • Hepatitis C virus replicons escape RNA interference induced by a short interfering RNA directed against the NS5b coding region
    • DOI 10.1128/JVI.79.11.7050-7058.2005
    • Wilson,J.A. and Richardson,C.D. (2005) Hepatitis C virus replicons escape RNA interference induced by a short interfering RNA directed against the NS5b coding region. J. Virol., 79, 7050-7058. (Pubitemid 40677336)
    • (2005) Journal of Virology , vol.79 , Issue.11 , pp. 7050-7058
    • Wilson, J.A.1    Richardson, C.D.2
  • 44
    • 33750062855 scopus 로고    scopus 로고
    • siRNA-resistance in treated HCV replicon cells is correlated with the development of specific HCV mutations
    • DOI 10.1111/j.1365-2893.2006.00752.x
    • Konishi,M., Wu,C.H., Kaito,M., Hayashi,K., Watanabe,S., Adachi,Y. and Wu,G.Y. (2006) siRNA-resistance in treated HCV replicon cells is correlated with the development of specific HCV mutations. J. Viral. Hepat., 13, 756-761. (Pubitemid 44583501)
    • (2006) Journal of Viral Hepatitis , vol.13 , Issue.11 , pp. 756-761
    • Konishi, M.1    Wu, C.H.2    Kaito, M.3    Hayashi, K.4    Watanabe, S.5    Adachi, Y.6    Wu, G.Y.7
  • 46
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice,P., Longden,I. and Bleasby,A. (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3


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