Two unique US isolates of Pepino mosaic virus from a limited source of pooled tomato tissue are distinct from a third (European-like) US isolate: Brief Report

Archives of Virology

Volumn 150, Issue 6, 2005, Pages 1187-1201

  Maroon Lango, C J ^a   Guaragna, M A ^a   Jordan, R L ^a   Hammond, J ^a   Bandla, M ^b   Marquardt, S K ^b  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b Agdia Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT DISEASE; POTEXVIRUS; TOMATO; UNITED STATES; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; GENOME, VIRAL; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLANT DISEASES; POTEXVIRUS; SEQUENCE ANALYSIS, DNA; UNITED STATES; VIRAL PROTEINS;

LYCOPERSICON ESCULENTUM; PEPINO MOSAIC VIRUS;

EID: 20144376493     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0495-z     Document Type: Article

References (24)

1. Aguilar JM, Hernandez-Gallardo MD, Cenis JL, Lacasa A, Aranda MA (2002) Complete sequence of the Pepino mosaic virus RNA genome. Arch Virol 147: 2009-2015
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
3. Baratova LA, Grebenshchikov NI, Dobrov EN, Gedrovich AV, Kashirin IA, Shishkov AV, Efimov AV, Järvekülg L, Radavsky Yu-L, Saarma M (1992) The organization of potato virus X proteins in virus particles studied by tritium planigraphy and model building. Virology 188: 175-180
4. Cheng J-H, Peng C-W, Hsu Y-H, Tsai C-H (2002) The synthesis of minus-strand RNA of Bamboo mosaic potexvirus initiates from multiple sites within the poly(A) tail. J Virol 76:6114-6120
5. Cotillon A-C, Girard M, Ducouret S (2002) Complete nucleotide sequence of genomic RNA of a French isolate of Pepino mosaic vims (PepMV). Arch Virol 147: 2231-2238
6. Felsenstein J (1993) PHYLIP: Phylogeny Inference Package (ver 3.5c). Distributed by the author. Department of Genetics, University of Washington, Seattle
7. French CJ, Bouthillier M, Bernardy M, Ferguson G, Sabourin M, Johnson RC, Masters C, Godkin S, Mumford R (2001) First report of Pepino mosaic virus in Canada and the United States. Plant Dis 85: 1121
8. Gibbs A, Armstrong J, Mackenzie AM, Weiller GF (1998) The GPRIME package: computer programs for identifying the best regions of aligned genes to target in nucleic acid hybridization-based diagnostic tests, and their use with plant viruses. J Virol Methods 74: 67-76
9. Güssow D, Clackson T (1989) Direct clone characterization from plaques and colonies by the polymerase chain reaction. Nucleic Acids Res 17: 4000
10. Jones RAC, Koenig R, Lesemann DE (1980) Pepino mosaic virus, a new potexvirus from pepino (Solanum muricatum). Ann Appl Biol 94: 61-68
11. Jordá C, Lázaro-Pérez A, Martínez-Culebras PV, Abad P, Lacasa A, Guerrero MM (2001a) First report of Pepino mosaic virus on tomato in Spain. Plant Dis 85: 1292
12. Jordá C, Lázaro-Pérez A, Martínez-Culebras PV, Lacasa A (2001b) First report of Pepino mosaic virus on natural hosts. Plant Dis 85: 1292
13. Lesemann DE, Dalchow J, Winter S, Pfeilstetter E (2000) Occurrence of Pepino mosaic virus in European tomato crops: identification, etiology and epidemiology. Mitt Biolo Bundesanst, Berlin-Dahlem 376: 323
14. Mansilla C, Sanchez F, Ponz F (2003) The diagnosis of the tomato variant of pepino mosaic virus: an IC-RT-PCR approach. Eur J Plant Pathol 109: 139-146
15. Maroon-Lango CJ, Guaragna MA, Jordan RL, Bandla M, Marquardt S (2003) Detection and characterization of a US isolate of Pepino mosaic virus. Phytopathology 93: S57
16. Martínez-Culebras PV, Lázaro A, Abad-Campos P, Jordá C (2002) A RT-PCR assay combined with RFLP analysis for detection and differentiation of isolates of Pepino mosaic virus (PepMV) from tomato. Eur J Plant Pathol 108: 887-892
17. Mumford RA, Metcalfe EJ (2001) The partial sequencing of the genomic RNA of a UK isolate of Pepino mosaic virus and the comparison of the coat protein sequence with other isolates from Europe and Peru. Arch Virol 146: 2455-2460
18. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358
19. Roggero P, Masenga V, Lenzi R, Coghe F, Ena S, Winter S (2001) First report of Pepino mosaic virus in tomato in Italy. Plant Pathol 50: 798
20. Soler S, Prothens J, Díez MJ, Nuez F (2002) Natural occurrence of Pepino mosaic virus in Lycopersicon species in central and southern Peru. J Phytopathology 150: 49-53
21. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
22. van der Vlugt RAA, Stijger CCMM, Verhoeven JThJ, Lesemann DE (2000) First report of Pepino mosaic virus in tomato. Plant Dis 84: 103
23. van der Vlugt RAA, Berendsen M (2002) Development of a general potexvirus detection method. Eur J Plant Pathol 108: 367-371
24. Verhoeven JThJ, van der Vlugt RAA, Roenhorst JW (2003) High similarity between tomato isolates of Pepino mosaic virus suggests a common origin. Eur J Plant Pathol 109: 419-425