-
1
-
-
33746717455
-
Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains
-
Bulashevska, A.; Eils, R. Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains. BMC Bioinformatics, 2006, 7, 298.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 298
-
-
Bulashevska, A.1
Eils, R.2
-
2
-
-
65449146341
-
Supervised ensembles of prediction methods for subcellular localization
-
Assfalg, J.; Gong, J.; Kriegel, H.P.; Pryakhin, A.; Wei, T.; Zimek, A. Supervised ensembles of prediction methods for subcellular localization. J. Bioinform. Comput. Biol., 2009, 7(2), 269-285.
-
(2009)
J. Bioinform. Comput. Biol.
, vol.7
, Issue.2
, pp. 269-285
-
-
Assfalg, J.1
Gong, J.2
Kriegel, H.P.3
Pryakhin, A.4
Wei, T.5
Zimek, A.6
-
3
-
-
74549167752
-
Cytoplasmic localization of beta-catenin is a marker of poor outcome in breast cancer patients
-
Lopez-Knowles, E.; Zardawi, S.J.; McNeil, C.M.; Millar, E.K.; Crea, P.; Musgrove, E.A.; Sutherland, R.L.; O'Toole, S.A. Cytoplasmic localization of beta-catenin is a marker of poor outcome in breast cancer patients. Cancer Epidemiol. Biomarkers Prev., 2010, 19(1), 301-309.
-
(2010)
Cancer Epidemiol. Biomarkers Prev.
, vol.19
, Issue.1
, pp. 301-309
-
-
Lopez-Knowles, E.1
Zardawi, S.J.2
McNeil, C.M.3
Millar, E.K.4
Crea, P.5
Musgrove, E.A.6
Sutherland, R.L.7
O'Toole, S.A.8
-
4
-
-
34247516510
-
The Arctic Alzheimer mutation favors intracellular amyloid-β production by making amyloid precursor protein less available to α-secretase
-
DOI 10.1111/j.1471-4159.2006.04443.x
-
Sahlin, C.; Lord, A.; Magnusson, K.; Englund, H.; Almeida, C.G.; Greengard, P.; Nyberg, F.; Gouras, G.K.; Lannfelt, L.; Nilsson, L.N. The Arctic Alzheimer mutation favors intracellular amyloidbeta production by making amyloid precursor protein less available to alpha-secretase. J. Neurochem., 2007, 101(3), 854-862. (Pubitemid 46646626)
-
(2007)
Journal of Neurochemistry
, vol.101
, Issue.3
, pp. 854-862
-
-
Sahlin, C.1
Lord, A.2
Magnusson, K.3
Englund, H.4
Almeida, C.G.5
Greengard, P.6
Nyberg, F.7
Gouras, G.K.8
Lannfelt, L.9
Nilsson, L.N.G.10
-
5
-
-
33845760114
-
Automated Subcellular Location Determination and High-Throughput Microscopy
-
DOI 10.1016/j.devcel.2006.12.007, PII S1534580706005703
-
Glory, E.; Murphy, R.F. Automated subcellular location determination and high-throughput microscopy. Dev. Cell, 2007, 12, 7-16. (Pubitemid 46002604)
-
(2007)
Developmental Cell
, vol.12
, Issue.1
, pp. 7-16
-
-
Glory, E.1
Murphy, R.F.2
-
6
-
-
69949108094
-
-
(December 1)
-
Smith, C. Subcellular targeting of proteins and drugs. http://www.biocompare.com/Articles/TechnologySpotlight/976/Sub cellular-Targeting-Of-Proteins-And-Drugs.html, 2008, (December 1).
-
(2008)
Subcellular Targeting of Proteins and Drugs
-
-
Smith, C.1
-
7
-
-
70349254021
-
Exploring the function-location nexus: Using multiple lines of evidence in defining the subcellular location of plant proteins
-
Millar, A.H.; Carrie, C.; Pogson, B.; Whelan, J. Exploring the function-location nexus: using multiple lines of evidence in defining the subcellular location of plant proteins. Plant Cell, 2009, 21(6), 1625-1631.
-
(2009)
Plant Cell
, vol.21
, Issue.6
, pp. 1625-1631
-
-
Millar, A.H.1
Carrie, C.2
Pogson, B.3
Whelan, J.4
-
8
-
-
0025933503
-
Expert system for predicting protein localization sites in Gram-negative bacteria
-
Nakai, K.; Kanehisa, M. Expert system for predicting protein localization sites in Gram-negative bacteria. Proteins, 1991, 11, 95-110.
-
(1991)
Proteins
, vol.11
, pp. 95-110
-
-
Nakai, K.1
Kanehisa, M.2
-
9
-
-
0028239038
-
Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies
-
DOI 10.1006/jmbi.1994.1267
-
Nakashima, H.; Nishikawa, K. Discrimination of intracellular and extracellular proteins using amino acid composition and residuepair frequencies. J. Mol. Biol., 1994, 238, 54-61. (Pubitemid 24156401)
-
(1994)
Journal of Molecular Biology
, vol.238
, Issue.1
, pp. 54-61
-
-
Nakashima, H.1
Nishikawa, K.2
-
10
-
-
0031588694
-
Relation between amino acid composition and cellular location of proteins
-
DOI 10.1006/jmbi.1996.0804
-
Cedano, J.; Aloy, P.; Perez-Pons, J.A.; Querol, E. Relation between amino acid composition and cellular location of proteins. J. Mol. Biol., 1997, 266(3), 594-600. (Pubitemid 27117290)
-
(1997)
Journal of Molecular Biology
, vol.266
, Issue.3
, pp. 594-600
-
-
Cedano, J.1
Aloy, P.2
Perez-Pons, J.A.3
Querol, E.4
-
11
-
-
0032077533
-
Using neural networks for prediction of the subcellular location of proteins
-
DOI 10.1093/nar/26.9.2230
-
Reinhardt, A.; Hubbard, T. Using neural networks for prediction of the subcellular location of proteins. Nucleic Acids Res., 1998, 26(9), 2230-2236. (Pubitemid 28291771)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.9
, pp. 2230-2236
-
-
Reinhardt, A.1
Hubbard, T.2
-
12
-
-
0032940342
-
Protein subcellular location prediction
-
Chou, K.C.; Elrod, D.W. Protein subcellular location prediction. Protein Eng., 1999, 12(2), 107-118. (Pubitemid 29103689)
-
(1999)
Protein Engineering
, vol.12
, Issue.2
, pp. 107-118
-
-
Chou, K.-C.1
Elrod, D.W.2
-
13
-
-
0034697980
-
Predicting subcellular localization of proteins based on their Nterminal amino acid sequence
-
Emanuelsson, O.; Nielsen, H.; Brunak, S.; von Heijne, G. Predicting subcellular localization of proteins based on their Nterminal amino acid sequence. J. Mol. Biol., 2000, 300(4), 1005-1016.
-
(2000)
J. Mol. Biol.
, vol.300
, Issue.4
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
14
-
-
0344118117
-
Better Prediction of Sub-Cellular Localization by Combining Evolutionary and Structural Information
-
DOI 10.1002/prot.10507
-
Nair, R.; Rost, B. Better prediction of sub-cellular localization by combining evolutionary and structural information. Proteins: Struct. Funct. Genet., 2003, 53(4), 917-930. (Pubitemid 37490444)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.53
, Issue.4
, pp. 917-930
-
-
Nair, R.1
Rost, B.2
-
15
-
-
0037233515
-
Subcellular location prediction of apoptosis proteins
-
DOI 10.1002/prot.10251
-
Zhou, G.P.; Doctor, K. Subcellular location prediction of apoptosis proteins. Proteins: Struct. Funct. Genet., 2003, 50, 44-48. (Pubitemid 36090607)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.50
, Issue.1
, pp. 44-48
-
-
Zhou, G.-P.1
Doctor, K.2
-
16
-
-
0141515750
-
Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino pairs
-
DOI 10.1093/bioinformatics/btg222
-
Park, K.J.; Kanehisa, M. Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics, 2003, 19(13), 1656-1663. (Pubitemid 37121154)
-
(2003)
Bioinformatics
, vol.19
, Issue.13
, pp. 1656-1663
-
-
Park, K.-J.1
Kanehisa, M.2
-
17
-
-
4544322645
-
Predicting 22 protein localizations in budding yeast
-
Cai, Y.D.; Chou, K.C. Predicting 22 protein localizations in budding yeast. Biochem. Biophys. Res. Commun., 2004, 323(2), 425-428.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.323
, Issue.2
, pp. 425-428
-
-
Cai, Y.D.1
Chou, K.C.2
-
18
-
-
15244350269
-
Using complexity measure factor to predict protein subcellular location
-
DOI 10.1007/s00726-004-0148-7
-
Xiao, X.; Shao, S.; Ding, Y.; Huang, Z.; Huang, Y.; Chou, K.C. Using complexity measure factor to predict protein subcellular location. Amino Acids, 2005, 28, 57-61. (Pubitemid 40385395)
-
(2005)
Amino Acids
, vol.28
, Issue.1
, pp. 57-61
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Huang, Y.5
Chou, K.-C.6
-
19
-
-
16344396089
-
Predicting protein localization in budding yeast
-
Chou, K.C.; Cai, Y.D. Predicting protein localization in budding yeast. Bioinformatics, 2005, 21(7), 944-950.
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 944-950
-
-
Chou, K.C.1
Cai, Y.D.2
-
20
-
-
32944461574
-
Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
-
DOI 10.1007/s00726-005-0225-6
-
Xiao, X.; Shao, S.H.; Ding, Y.S.; Huang, Z.D.; Chou, K.C. Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids, 2006, 30, 49-54. (Pubitemid 43261126)
-
(2006)
Amino Acids
, vol.30
, Issue.1
, pp. 49-54
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Chou, K.-C.5
-
21
-
-
17644389617
-
Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search
-
DOI 10.1074/jbc.M411789200
-
Garg, A.; Bhasin, M.; Raghava, G.P. Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J. Biol. Chem., 2005, 280(15), 14427-14432. (Pubitemid 40562782)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.15
, pp. 14427-14432
-
-
Garg, A.1
Bhasin, M.2
Raghava, G.P.S.3
-
22
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou, K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics, 2005, 21(1), 10-19.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
, pp. 10-19
-
-
Chou, K.C.1
-
23
-
-
33947390931
-
Prediction of the subcellular location of apoptosis proteins
-
Chen, Y.L.; Li, Q.Z. Prediction of the subcellular location of apoptosis proteins. J. Theor. Biol., 2007, 245, 775-783.
-
(2007)
J. Theor. Biol.
, vol.245
, pp. 775-783
-
-
Chen, Y.L.1
Li, Q.Z.2
-
24
-
-
34548009150
-
Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition
-
Chen, Y.L.; Li, Q.Z. Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo amino acid composition. J. Theor. Biol., 2007, 248, 377-381.
-
(2007)
J. Theor. Biol.
, vol.248
, pp. 377-381
-
-
Chen, Y.L.1
Li, Q.Z.2
-
25
-
-
43549087105
-
Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: An approach by approximate entropy
-
DOI 10.2174/092986608784246443
-
Jiang, X.; Wei, R.; Zhang, T.L.; Gu, Q. Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location: an approach by approximate entropy. Protein Pept. Lett., 2008, 15, 392-396. (Pubitemid 351679342)
-
(2008)
Protein and Peptide Letters
, vol.15
, Issue.4
, pp. 392-396
-
-
Jiang, X.1
Wei, R.2
Zhang, T.3
Gu, Q.4
-
26
-
-
41449117926
-
Predicting subcellular localization with AdaBoost learner
-
DOI 10.2174/092986608783744234
-
Jin, Y.; Niu, B.; Feng, K.Y.; Lu, W.C.; Cai, Y.D.; Li, G.Z. Predicting subcellular localization with AdaBoost learner. Protein Pept. Lett., 2008, 15, 286-289. (Pubitemid 351457378)
-
(2008)
Protein and Peptide Letters
, vol.15
, Issue.3
, pp. 286-289
-
-
Jin, Y.-H.1
Niu, B.2
Feng, K.-Y.3
Lu, W.-C.4
Cai, Y.-D.5
Li, G.-Z.6
-
27
-
-
47249153247
-
Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
-
Li, F.M.; Li, Q.Z. Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett., 2008, 15(6), 612-616.
-
(2008)
Protein Pept. Lett.
, vol.15
, Issue.6
, pp. 612-616
-
-
Li, F.M.1
Li, Q.Z.2
-
28
-
-
49449087313
-
Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition
-
Lin, H.; Ding, H.; Feng-Biao Guo, F.B.; Zhang, A.Y.; Huang, J. Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition. Protein Pept. Lett., 2008, 15(7), 739-744.
-
(2008)
Protein Pept. Lett.
, vol.15
, Issue.7
, pp. 739-744
-
-
Lin, H.1
Ding, H.2
Feng-Biao Guo, F.B.3
Zhang, A.Y.4
Huang, J.5
-
29
-
-
73549106100
-
Gpos-mPLoc: A top-down approach to improve the quality of predicting subcellular localization of Grampositive bacterial proteins
-
Shen, H.B.; Chou, K.C. Gpos-mPLoc: A top-down approach to improve the quality of predicting subcellular localization of Grampositive bacterial proteins. Protein Pept. Lett., 2009, 16, 1478-1484.
-
(2009)
Protein Pept. Lett.
, vol.16
, pp. 1478-1484
-
-
Shen, H.B.1
Chou, K.C.2
-
30
-
-
67349230921
-
A novel representation for apoptosis protein subcellular localization prediction using support vector machine
-
Zhang, L.; Liao, B.; Li, D.; Zhu, W. A novel representation for apoptosis protein subcellular localization prediction using support vector machine. J. Theor. Biol., 2009, 259(2), 361-365.
-
(2009)
J. Theor. Biol.
, vol.259
, Issue.2
, pp. 361-365
-
-
Zhang, L.1
Liao, B.2
Li, D.3
Zhu, W.4
-
31
-
-
77953298113
-
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2
-
openly accessible at http://www.plosone.org/article/info% 9933Adoi%9932F9910.1371%9932Fjournal.pone.0009931
-
Chou, K.C.; Shen, H.B. A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0 PLoS ONE, 2010, 5(4), e9931; openly accessible at http://www.plosone.org/article/info% 9933Adoi%9932F9910.1371%9932Fjournal.pone. 0009931.
-
(2010)
0 PLoS ONE
, vol.5
, Issue.4
-
-
Chou, K.C.1
Shen, H.B.2
-
32
-
-
77956199192
-
Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization
-
Chou, K.C.; Shen, H.B. Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization. PLoS ONE, 2010, 5(6), e11335.
-
(2010)
PLoS ONE
, vol.5
, Issue.6
-
-
Chou, K.C.1
Shen, H.B.2
-
33
-
-
0033909566
-
Protein sorting signals and prediction of subcellular localization
-
Nakai, K. Protein sorting signals and prediction of subcellular localization. Adv. Protein Chem., 2000, 54, 277-344. (Pubitemid 30458951)
-
(2000)
Advances in Protein Chemistry
, vol.54
, pp. 277-344
-
-
Nakai, K.1
-
34
-
-
34548606295
-
Recent progress in protein subcellular location prediction
-
Chou, K.C.; Shen, H.B. Recent progress in protein subcellular location prediction. Anal. Biochem., 2007, 370(1), 1-16.
-
(2007)
Anal. Biochem.
, vol.370
, Issue.1
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
35
-
-
0035400447
-
Prediction of protein cellular attributes using pseudo amino acid composition
-
2001, 43, 246-255
-
Chou, K.C. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins (Erratum: ibid., 2001, Vol.44, 60), 2001, 43, 246-255.
-
(2001)
Proteins (Erratum: Ibid.)
, vol.44
, pp. 60
-
-
Chou, K.C.1
-
36
-
-
0035174388
-
The SBASE protein domain library, release 8.0: A collection of annotated protein sequence segments
-
Murvai, J.; Vlahovicek, K.; Barta, E.; Pongor, S. The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments. Nucleic Acids Res., 2001, 29, 58-60. (Pubitemid 32054407)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.1
, pp. 58-60
-
-
Murvai, J.1
Vlahovicek, K.2
Barta, E.3
Pongor, S.4
-
37
-
-
0036907158
-
Extension and integration of the gene ontology (GO): Combining GO vocabularies with external vocabularies
-
DOI 10.1101/gr.580102
-
Hill, D.P.; Blake, J.A.; Richardson, J.E.; Ringwald, M. Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies. Genome Res., 2002, 12(12), 1982-1991. (Pubitemid 35469948)
-
(2002)
Genome Research
, vol.12
, Issue.12
, pp. 1982-1991
-
-
Hill, D.P.1
Blake, J.A.2
Richardson, J.E.3
Ringwald, M.4
-
38
-
-
72449203319
-
Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
-
Chou, K.C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr. Proteomics, 2009, 6(4), 262-274.
-
(2009)
Curr. Proteomics
, vol.6
, Issue.4
, pp. 262-274
-
-
Chou, K.C.1
-
39
-
-
64049083918
-
Protein-protein interaction as a predictor of subcellular location
-
Shin, C.J.; Wong, S.; Davis, M.J.; Ragan, M.A. Protein-protein interaction as a predictor of subcellular location. BMC Syst. Biol., 2009, 3, 28.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 28
-
-
Shin, C.J.1
Wong, S.2
Davis, M.J.3
Ragan, M.A.4
-
40
-
-
13444306676
-
CYGD: The Comprehensive Yeast Genome Database
-
DOI 10.1093/nar/gki053
-
Guldener, U.; Munsterkotter, M.; Kastenmuller, G.; Strack, N.; van Helden, J.; Lemer, C.; Richelles, J.; Wodak, S.J.; Garcia-Martinez, J.; Perez-Ortin, J.E.; Michael, H.; Kaps, A.; Talla, E.; Dujon, B.; Andre, B.; Souciet, J.L.; De Montigny, J.; Bon, E.; Gaillardin, C.; Mewes, H.W. CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Res., 2005, 33(Database issue), D364-368. (Pubitemid 40207896)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS.
-
-
Guldener, U.1
Munsterkotter, M.2
Kastenmuller, G.3
Strack, N.4
Van Helden, J.5
Lemer, C.6
Richelles, J.7
Wodak, S.J.8
Garcia-Martinez, J.9
Perez-Ortin, J.E.10
Michael, H.11
Kaps, A.12
Talla, E.13
Dujon, B.14
Andre, B.15
Souciet, J.L.16
De Montigny, J.17
Bon, E.18
Gaillardin, C.19
Mewes, H.W.20
more..
-
41
-
-
33745759451
-
Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
-
Chou, K.C.; Shen, H.B. Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization. Biochem. Biophys. Res. Commun., 2006, 347, 150-157.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.347
, pp. 150-157
-
-
Chou, K.C.1
Shen, H.B.2
-
42
-
-
33846605183
-
Large-scale plant protein subcellular location prediction
-
Chou, K.C.; Shen, H.B. Large-scale plant protein subcellular location prediction. J. Cell. Biochem., 2007, 100, 665-678.
-
(2007)
J. Cell. Biochem.
, vol.100
, pp. 665-678
-
-
Chou, K.C.1
Shen, H.B.2
-
43
-
-
58149193234
-
STRING 8-a global view on proteins and their functional interactions in 630 organisms
-
Jensen, L.J.; Kuhn, M.; Stark, M.; Chaffron, S.; Creevey, C.; Muller, J.; Doerks, T.; Julien, P.; Roth, A.; Simonovic, M.; Bork, P.; von Mering, C. STRING 8-a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res., 2009, 37(Database issue), D412-416.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.DATABASE ISSUE
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
Muller, J.6
Doerks, T.7
Julien, P.8
Roth, A.9
Simonovic, M.10
Bork, P.11
Von Mering, C.12
-
44
-
-
0029157083
-
Review: Prediction of protein structural classes
-
Chou, K.C.; Zhang, C.T. Review: Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30, 275-349.
-
(1995)
Crit. Rev. Biochem. Mol. Biol.
, vol.30
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
45
-
-
0033151954
-
Recognition of a protein fold in the context of the SCOP classification
-
DOI 10.1002/(SICI)1097-0134(19990601)35:4<401::AID-PROT3>3.0.CO;2-K
-
Dubchak, I.; Muchnik, I.; Mayor, C.; Dralyuk, I.; Kim, S.H. Recognition of a protein fold in the context of the Structural Classification of Proteins (SCOP) classification. Proteins, 1999, 35(4), 401-407. (Pubitemid 29264836)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.35
, Issue.4
, pp. 401-407
-
-
Dubchak, I.1
Muchnik, I.2
Mayor, C.3
Dralyuk, I.4
Kim, S.-H.5
-
46
-
-
0035014847
-
Multi-class protein fold recognition using support vector machines and neural networks
-
Ding, C.H.; Dubchak, I. Multi-class protein fold recognition using support vector machines and neural networks. Bioinformatics, 2001, 17, 349-358. (Pubitemid 32421929)
-
(2001)
Bioinformatics
, vol.17
, Issue.4
, pp. 349-358
-
-
Ding, C.H.Q.1
Dubchak, I.2
-
47
-
-
38149007012
-
Predicting DNA-binding proteins: Approached from Chou's pseudo amino acid composition and other specific sequence features
-
Fang, Y.; Guo, Y.; Feng, Y.; Li, M. Predicting DNA-binding proteins: approached from Chou's pseudo amino acid composition and other specific sequence features. Amino Acids, 2008, 34, 103-109.
-
(2008)
Amino Acids
, vol.34
, pp. 103-109
-
-
Fang, Y.1
Guo, Y.2
Feng, Y.3
Li, M.4
-
48
-
-
67650739405
-
Prediction of protein structural classes by Chou's pseudo amino acid composition: Approached using continuous wavelet transform and principal component analysis
-
Li, Z.C.; Zhou, X.B.; Dai, Z.; Zou, X.Y. Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis. Amino Acids, 2009, 37(2), 415-425.
-
(2009)
Amino Acids
, vol.37
, Issue.2
, pp. 415-425
-
-
Li, Z.C.1
Zhou, X.B.2
Dai, Z.3
Zou, X.Y.4
-
49
-
-
67349244013
-
Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
-
Zeng, Y.H.; Guo, Y.Z.; Xiao, R.Q.; Yang, L.; Yu, L.Z.; Li, M.L. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol., 2009, 259, 366-372.
-
(2009)
J. Theor. Biol.
, vol.259
, pp. 366-372
-
-
Zeng, Y.H.1
Guo, Y.Z.2
Xiao, R.Q.3
Yang, L.4
Yu, L.Z.5
Li, M.L.6
-
50
-
-
65349165718
-
Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition
-
Ding, H.; Luo, L.; Lin, H. Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett., 2009, 16, 351-355.
-
(2009)
Protein Pept. Lett.
, vol.16
, pp. 351-355
-
-
Ding, H.1
Luo, L.2
Lin, H.3
-
51
-
-
77955964484
-
Using the concept of chou's pseudo amino acid composition to predict enzyme family classes: An approach with support vector machine based on discrete wavelet transform
-
Qiu, J.D.; Huang, J.H.; Shi, S.P.; Liang, R.P. Using the Concept of Chou's Pseudo Amino Acid Composition to Predict Enzyme Family Classes: An Approach with Support Vector Machine Based on Discrete Wavelet Transform. Protein Pept. Lett., 2010, 17, 715-712.
-
(2010)
Protein Pept. Lett.
, vol.17
, pp. 715-712
-
-
Qiu, J.D.1
Huang, J.H.2
Shi, S.P.3
Liang, R.P.4
-
52
-
-
77950448057
-
Predicting drug-target interaction networks based on functional groups and biological features
-
He, Z.S.; Zhang, J.; Shi, X.H.; Hu, L.L.; Kong, X.G.; Cai, Y.D.; Chou, K.C. Predicting drug-target interaction networks based on functional groups and biological features. PLoS ONE, 2010, 5(3), e9603.
-
(2010)
PLoS ONE
, vol.5
, Issue.3
-
-
He, Z.S.1
Zhang, J.2
Shi, X.H.3
Hu, L.L.4
Kong, X.G.5
Cai, Y.D.6
Chou, K.C.7
-
53
-
-
77955199287
-
Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks
-
Huang, T.; Shi, X.H.; Wang, P.; He, Z.; Feng, K.Y.; Hu, L.; Kong, X.; Li, Y.X.; Cai, Y.D.; Chou, K.C. Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks. PLoS ONE, 2010, 5(6), e10972.
-
(2010)
PLoS ONE
, vol.5
, Issue.6
-
-
Huang, T.1
Shi, X.H.2
Wang, P.3
He, Z.4
Feng, K.Y.5
Hu, L.6
Kong, X.7
Li, Y.X.8
Cai, Y.D.9
Chou, K.C.10
-
54
-
-
0025277191
-
The classification and origins of protein folding patterns
-
Chothia, C.; Finkelstein, A.V. The classification and origins of protein folding patterns. Annu. Rev. Biochem., 1990, 59, 1007-1039.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 1007-1039
-
-
Chothia, C.1
Finkelstein, A.V.2
-
55
-
-
0030931336
-
Seventy-five percent accuracy in protein secondary structure prediction
-
DOI 10.1002/(SICI)1097-0134(199703)27:3<329::AID-PROT1>3.0.CO;2-8
-
Frishman, D.; Argos, P. Seventy-five percent accuracy in protein secondary structure prediction. Proteins, 1997, 27(3), 329-335. (Pubitemid 27149285)
-
(1997)
Proteins: Structure, Function and Genetics
, vol.27
, Issue.3
, pp. 329-335
-
-
Frishman, D.1
Argos, P.2
-
56
-
-
0033049071
-
PredAcc: Prediction of solvent accessibility
-
DOI 10.1093/bioinformatics/15.2.176
-
Mucchielli-Giorgi, M.H.; Hazout, S.; Tuffery, P. PredAcc: prediction of solvent accessibility. Bioinformatics, 1999, 15(2), 176-177. (Pubitemid 29134734)
-
(1999)
Bioinformatics
, vol.15
, Issue.2
, pp. 176-177
-
-
Mucchielli-Giorgi, M.H.1
Hazout, S.2
Tuffery, P.3
-
57
-
-
24344458137
-
Feature selection based on mutual information: Criteria of Max-Dependency, Max-Relevance, and Min-Redundancy
-
DOI 10.1109/TPAMI.2005.159
-
Peng, H.; Long, F.; Ding, C. Feature selection based on mutual information: criteria of max-dependency, max-relevance, and minredundancy. IEEE Trans. Pattern Anal. Mach. Intell., 2005, 27(8), 1226-1238. (Pubitemid 41245053)
-
(2005)
IEEE Transactions on Pattern Analysis and Machine Intelligence
, vol.27
, Issue.8
, pp. 1226-1238
-
-
Peng, H.1
Long, F.2
Ding, C.3
-
58
-
-
84926662675
-
Nearest neighbour pattern classification
-
Cover, T.M.; Hart, P.E. Nearest neighbour pattern classification. IEEE Trans. Inform. Theory, 1967, IT-13, 21-27.
-
(1967)
IEEE Trans. Inform. Theory
, vol.IT-13
, pp. 21-27
-
-
Cover, T.M.1
Hart, P.E.2
-
60
-
-
0002975203
-
On the generalized distance in statistics
-
Mahalanobis, P.C. On the generalized distance in statistics. Proc. Natl. Inst. Sci. India, 1936, 2, 49-55.
-
(1936)
Proc. Natl. Inst. Sci. India
, vol.2
, pp. 49-55
-
-
Mahalanobis, P.C.1
-
61
-
-
0028121983
-
Predicting protein folding types by distance functions that make allowances for amino acid interactions
-
Chou, K.C.; Zhang, C.T. Predicting protein folding types by distance functions that make allowances for amino acid interactions. J. Biol. Chem., 1994, 269, 22014-22020.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22014-22020
-
-
Chou, K.C.1
Zhang, C.T.2
-
62
-
-
0029051959
-
A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
-
Chou, K.C. A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins, 1995, 21, 319-344.
-
(1995)
Proteins
, vol.21
, pp. 319-344
-
-
Chou, K.C.1
-
63
-
-
0242409819
-
A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology
-
Chou, K.C.; Cai, Y.D. A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology. Biochem. Biophys. Res. Commun., 2003, 311, 743-747.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.311
, pp. 743-747
-
-
Chou, K.C.1
Cai, Y.D.2
-
64
-
-
39449105071
-
Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
-
Chou, K.C.; Shen, H.B. Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms. Nat. Protoc., 2008, 3, 153-162.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
65
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
-
Chou, K.C. Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol., 2011, 273(1), 236-247
-
(2011)
J. Theor. Biol.
, vol.273
, Issue.1
, pp. 236-247
-
-
Chou, K.C.1
-
66
-
-
42749090472
-
The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
-
Lin, H. The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol., 2008, 252, 350-356.
-
(2008)
J. Theor. Biol.
, vol.252
, pp. 350-356
-
-
Lin, H.1
-
67
-
-
34548439881
-
Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
-
DOI 10.1016/j.jtbi.2007.06.001, PII S0022519307002809
-
Zhou, X.B.; Chen, C.; Li, Z.C.; Zou, X.Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol., 2007, 248, 546-551. (Pubitemid 47368372)
-
(2007)
Journal of Theoretical Biology
, vol.248
, Issue.3
, pp. 546-551
-
-
Zhou, X.-B.1
Chen, C.2
Li, Z.-C.3
Zou, X.-Y.4
-
68
-
-
78649756877
-
Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
-
Hayat, M.; Khan, A. Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition. J. Theor. Biol., 2011, 271, 10-17.
-
(2011)
J. Theor. Biol.
, vol.271
, pp. 10-17
-
-
Hayat, M.1
Khan, A.2
-
69
-
-
78649326452
-
AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
-
Kandaswamy, K.K.; Chou, K.C.; Martinetz, T.; Moller, S.; Suganthan, P.N.; Sridharan, S.; Pugalenthi, G. AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties. J. Theor. Biol., 2011, 270, 56-62.
-
(2011)
J. Theor. Biol.
, vol.270
, pp. 56-62
-
-
Kandaswamy, K.K.1
Chou, K.C.2
Martinetz, T.3
Moller, S.4
Suganthan, P.N.5
Sridharan, S.6
Pugalenthi, G.7
-
70
-
-
61549096128
-
Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
-
Chen, C.; Chen, L.; Zou, X.; Cai, P. Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett., 2009, 16(1), 27-31.
-
(2009)
Protein Pept. Lett.
, vol.16
, Issue.1
, pp. 27-31
-
-
Chen, C.1
Chen, L.2
Zou, X.3
Cai, P.4
-
71
-
-
77958497871
-
Prediction of cyclin proteins using Chou's pseudo amino acid composition
-
Mohabatkar, H. Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein Pept. Lett., 2010, 17(10), 1207-1214.
-
(2010)
Protein Pept. Lett.
, vol.17
, Issue.10
, pp. 1207-1214
-
-
Mohabatkar, H.1
-
72
-
-
79251604991
-
Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties
-
Hu, L.; Huang, T.; Shi, X.; Lu, W.C.; Cai, Y.D.; Chou, K.C. Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties PLoS ONE, 2011, 6(1), e14556.
-
(2011)
PLoS ONE
, vol.6
, Issue.1
-
-
Hu, L.1
Huang, T.2
Shi, X.3
Lu, W.C.4
Cai, Y.D.5
Chou, K.C.6
-
73
-
-
33746218840
-
Prediction of protein subcellular localization
-
Yu, C.S.; Chen, Y.C.; Lu, C.H.; Hwang, J.K. Prediction of protein subcellular localization. Proteins, 2006, 64(3), 643-651.
-
(2006)
Proteins
, vol.64
, Issue.3
, pp. 643-651
-
-
Yu, C.S.1
Chen, Y.C.2
Lu, C.H.3
Hwang, J.K.4
-
74
-
-
33747375161
-
PTARGET: A web server for predicting protein subcellular localization
-
DOI 10.1093/nar/gkl093
-
Guda, C. pTARGET: a web server for predicting protein subcellular localization. Nucleic Acids Res., 2006, 34(Web Server issue), W210-213. (Pubitemid 44538120)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Guda, C.1
-
75
-
-
34547560275
-
WoLF PSORT: Protein localization predictor
-
Horton, P.; Park, K.J.; Obayashi, T.; Fujita, N.; Harada, H.; Adams-Collier, C.J.; Nakai, K. WoLF PSORT: protein localization predictor. Nucleic Acids Res., 2007, 35(Web Server issue), W585-587.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
|