pTARGET: A web server for predicting protein subcellular localization

Nucleic Acids Research

Volumn 34, Issue WEB. SERV. ISS., 2006, Pages

  Guda, Chittibabu ^a  

^a STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CAENORHABDITIS ELEGANS PROTEIN; CELL MEMBRANE PROTEIN; CYTOPLASM PROTEIN; DROSOPHILA PROTEIN; MITOCHONDRIAL PROTEIN; NUCLEAR PROTEIN; PROTEOME; SACCHAROMYCES CEREVISIAE PROTEIN; SECRETORY PROTEIN; PROTEIN;

ACCESS TO INFORMATION; ALGORITHM; ARTICLE; CAENORHABDITIS ELEGANS; CELLULAR DISTRIBUTION; CLIENT SERVER APPLICATION; COMPUTER INTERFACE; COMPUTER PREDICTION; COMPUTER PROGRAM; CONTROLLED STUDY; DROSOPHILA; E-MAIL; EUKARYOTE; HUMAN; INTERNET; NONHUMAN; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; ANIMAL; CHEMISTRY; METHODOLOGY; MOUSE;

CAENORHABDITIS ELEGANS; EUKARYOTA; HOMO SAPIENS; MUS MUSCULUS; SACCHAROMYCES CEREVISIAE;

ALGORITHMS; ANIMALS; HUMANS; INTERNET; MICE; PROTEINS; PROTEOMICS; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 33747375161     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl093     Document Type: Article

References (12)

1. Nielsen,H., Engelbrech,J., Brunak,S. and von Heijne,G. (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng., 10, 1-6.
2. Nakai,K. and Horton,P. (1999) PSORT: a program for detecting the sorting signals of proteins and predicting their subcellular localization. Trends Biochem. Sci., 24, 34-36.
3. Emanuelsson,O., Nielsen,H., Brunak,S. and von Heijne,G. (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol., 300, 1005-1016.
4. Hua,S. and Sun,Z. (2001) Support vector machine approach for protein subcellular localization prediction. Bioinformatics, 17, 721-728.
5. Chou,K.C. (2001) Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins, 43, 246-255.
6. Sarda,D, Chua,G.H., Li,K.B. and Krishnan,A. (2005) pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties. BMC Bioinformatics, 6, 152.
7. Nair,R. and Rost,B. (2002) Inferring sub-cellular localization through automated lexical analysis. Bioinformatics, 18, S78-S86.
8. Marcotte,E.M., Xenarios,I., van Der Bliek,A.M. and Eisenberg,D. (2000) Localizing proteins in the cell from their phylogenetic profiles. Proc. Natl Acad. Sci. USA, 97, 12115-12120.
9. Mott,R., Schultz,J., Bork,P. and Ponting,C.P. (2002) Predicting protein cellular location using a domain projection method. Genome Res., 12, 1168-1174.
10. Guda,C., Fahy,E. and Subramaniam,S. (2004) MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics, 20, 1784-1794.
11. Guda,C., Guda,P., Fahy,E. and Subramaniam,S. (2004) MITOPRED: A web server for genome-scale prediction of mitochondrial proteins. Nucleic Acids Res., 32, W372-W374.
12. Guda,C. and Subramaniam,S. (2005) pTARGET: A new method for predicting protein sub-cellular localization in eukaryotes. Bioinformatics, 21, 3963-3969.