메뉴 건너뛰기




Volumn 3 MAY, Issue , 2012, Pages

Computational modeling and numerical methods for spatiotemporal calcium cycling in ventricular myocytes

Author keywords

Calcium cycling; Graphical processing unit computing; Mathematical modeling; Ventricular myocyte

Indexed keywords


EID: 84861894595     PISSN: None     EISSN: 1664042X     Source Type: Journal    
DOI: 10.3389/fphys.2012.00114     Document Type: Article
Times cited : (50)

References (49)
  • 3
    • 0034304906 scopus 로고    scopus 로고
    • The versatility and universality of calcium signalling
    • Berridge, M., Lipp, P., and Bootman, M. (2000). The versatility and universality of calcium signalling. Nat. Rev. Mol. CellBiol. 1, 11-21.
    • (2000) Nat. Rev. Mol. CellBiol. , vol.1 , pp. 11-21
    • Berridge, M.1    Lipp, P.2    Bootman, M.3
  • 4
    • 0037049977 scopus 로고    scopus 로고
    • Cardiac excitation-contraction coupling
    • Bers, D. (2002). Cardiac excitation-contraction coupling. Nature 415, 198-205.
    • (2002) Nature , vol.415 , pp. 198-205
    • Bers, D.1
  • 5
    • 43549098268 scopus 로고    scopus 로고
    • Calcium cycling and signaling in cardiac myocytes
    • Bers, D. (2008). Calcium cycling and signaling in cardiac myocytes. Annu. Rev. Physiol. 70,23-49.
    • (2008) Annu. Rev. Physiol. , vol.70 , pp. 23-49
    • Bers, D.1
  • 6
    • 67650032880 scopus 로고    scopus 로고
    • Role of coupled gating between cardiac ryanodine receptors in the genesis of triggered arrhythmias
    • Chen, W., Wasserstrom, J. A., and Shiferaw, Y. (2009). Role of coupled gating between cardiac ryanodine receptors in the genesis of triggered arrhythmias. Am. J. Physiol. Heart Circ. Physiol. 297, H171-H180.
    • (2009) Am. J. Physiol. Heart Circ. Physiol. , vol.297
    • Chen, W.1    Wasserstrom, J.A.2    Shiferaw, Y.3
  • 7
    • 0027426069 scopus 로고
    • Calcium sparks: elementary events underlying excitation-contraction coupling in heart muscle
    • Cheng, H., Lederer, W., and Cannell, M. (1993). Calcium sparks: elementary events underlying excitation-contraction coupling in heart muscle. Science 262, 740-744.
    • (1993) Science , vol.262 , pp. 740-744
    • Cheng, H.1    Lederer, W.2    Cannell, M.3
  • 8
  • 10
    • 0020622452 scopus 로고
    • Relationship between membrane excitability and single channel open-close kinetics
    • Clay, J., and DeFelice, L. (1983). Relationship between membrane excitability and single channel open-close kinetics. Biophys. J. 42, 151-157.
    • (1983) Biophys. J. , vol.42 , pp. 151-157
    • Clay, J.1    DeFelice, L.2
  • 11
    • 0032839459 scopus 로고    scopus 로고
    • Shape, size, and distribution of Ca + release units and couplons in skeletal and cardiac muscles
    • Franzini-Armstrong, C., Protasi, F., and Ramesh, V. (1999). Shape, size, and distribution of Ca + release units and couplons in skeletal and cardiac muscles. Biophys. J. 77, 1528-1539.
    • (1999) Biophys. J. , vol.77 , pp. 1528-1539
    • Franzini-Armstrong, C.1    Protasi, F.2    Ramesh, V.3
  • 12
    • 34249950625 scopus 로고    scopus 로고
    • Stochastic simulation of chemical kinetics
    • Gillespie, D. (2007). Stochastic simulation of chemical kinetics. Annu. Rev. Phys. Chem. 58, 35-55.
    • (2007) Annu. Rev. Phys. Chem. , vol.58 , pp. 35-55
    • Gillespie, D.1
  • 13
    • 0036931558 scopus 로고    scopus 로고
    • An integrative model of the cardiac ventricular myocyte incorporating local control of Ca + release
    • Greenstein, J. L., and Winslow, R. L. (2002). An integrative model of the cardiac ventricular myocyte incorporating local control of Ca + release. Biophys. J. 83,2918-2945.
    • (2002) Biophys. J. , vol.83 , pp. 2918-2945
    • Greenstein, J.L.1    Winslow, R.L.2
  • 14
    • 46749087880 scopus 로고    scopus 로고
    • Ryanodine receptor allosteric coupling and the dynamics of calcium sparks
    • Groff, J. R., and Smith, G. D. (2008). Ryanodine receptor allosteric coupling and the dynamics of calcium sparks. Biophys. J. 95,135-154.
    • (2008) Biophys. J. , vol.95 , pp. 135-154
    • Groff, J.R.1    Smith, G.D.2
  • 18
    • 26844519686 scopus 로고    scopus 로고
    • A strategy for integrative computational physiology
    • Hunter, P., and Nielsen, P. (2005). A strategy for integrative computational physiology. Physiology 20, 316-325.
    • (2005) Physiology , vol.20 , pp. 316-325
    • Hunter, P.1    Nielsen, P.2
  • 19
    • 33745756830 scopus 로고    scopus 로고
    • Interplay of ryanodine receptor distribution and calcium dynamics
    • Izu, L. T., Means, S. A., Shadid, J. N., Chen-Izu, Y., and Balke, C. W. (2006). Interplay of ryanodine receptor distribution and calcium dynamics. Biophys. J. 91, 95-112.
    • (2006) Biophys. J. , vol.91 , pp. 95-112
    • Izu, L.T.1    Means, S.A.2    Shadid, J.N.3    Chen-Izu, Y.4    Balke, C.W.5
  • 20
    • 0031594597 scopus 로고    scopus 로고
    • 2+ dynamics: the roles of ryanodine receptor adaptation and sarcoplasmic reticulum load
    • 2+ dynamics: the roles of ryanodine receptor adaptation and sarcoplasmic reticulum load. Biophys. J. 74, 1149-1168.
    • (1998) Biophys. J. , vol.74 , pp. 1149-1168
    • Jafri, M.S.1    Rice, J.J.2    Winslow, R.L.3
  • 21
    • 0004212171 scopus 로고    scopus 로고
    • Philadelphia: Lippincott Williams and Wilkins
    • Katz, A. M. (2011). Physiology of the Heart. Philadelphia: Lippincott Williams and Wilkins.
    • (2011) Physiology of the Heart
    • Katz, A.M.1
  • 22
    • 77949379471 scopus 로고    scopus 로고
    • 2+ clocks and surface membrane voltage clocks controls the timekeeping mechanism of the heart's pacemaker
    • 2+ clocks and surface membrane voltage clocks controls the timekeeping mechanism of the heart's pacemaker. Circ. Res. 106, 659-673.
    • (2010) Circ. Res. , vol.106 , pp. 659-673
    • Lakatta, E.G.1    Maltsev, V.A.2    Vinogradova, T.M.3
  • 23
    • 84155188927 scopus 로고    scopus 로고
    • Does the goldilocks principle apply to calcium release restitution in heart cells
    • Liu, O. Z., Lederer, W., and Sobie, E. A. (2012). Does the goldilocks principle apply to calcium release restitution in heart cells. J. Mol. Cell. Cardiol. 52, 3-6.
    • (2012) J. Mol. Cell. Cardiol. , vol.52 , pp. 3-6
    • Liu, O.Z.1    Lederer, W.2    Sobie, E.A.3
  • 24
    • 0028233422 scopus 로고
    • A dynamical model of the cardiac ventricular action potential: I Simulations of ionic currents and concentration changes
    • Luo, C., and Rudy, Y. (1994). A dynamical model of the cardiac ventricular action potential: I. Simulations of ionic currents and concentration changes. Circ. Res. 74, 1071-1096.
    • (1994) Circ. Res. , vol.74 , pp. 1071-1096
    • Luo, C.1    Rudy, Y.2
  • 28
    • 0032845277 scopus 로고    scopus 로고
    • An advanced algorithm for solving partial differential equations in cardiac conduction
    • Qu, Z., and Garfinkel, A. (1999). An advanced algorithm for solving partial differential equations in cardiac conduction. IEEE Trans. Bio-med. Eng. 46, 1166-1168.
    • (1999) IEEE Trans. Bio-med. Eng. , vol.46 , pp. 1166-1168
    • Qu, Z.1    Garfinkel, A.2
  • 29
    • 80053608521 scopus 로고    scopus 로고
    • Multi-scale modeling in biology: how to bridge the gaps between scales? Prog
    • Qu, Z., Garfinkel, A., Weiss, J. N., and Nivala, M. (2011). Multi-scale modeling in biology: how to bridge the gaps between scales? Prog. Biophys. Mol. Biol. 107, 21-31.
    • (2011) Biophys. Mol. Biol. , vol.107 , pp. 21-31
    • Qu, Z.1    Garfinkel, A.2    Weiss, J.N.3    Nivala, M.4
  • 31
    • 56049099295 scopus 로고    scopus 로고
    • Calsequestrin-mediated mechanism for cellular calcium transient alternans
    • Restrepo, J. G., Weiss, J. N., and Karma, A. (2008). Calsequestrin-mediated mechanism for cellular calcium transient alternans. Biophys. J. 95, 3767-3789.
    • (2008) Biophys. J. , vol.95 , pp. 3767-3789
    • Restrepo, J.G.1    Weiss, J.N.2    Karma, A.3
  • 32
    • 77953022226 scopus 로고    scopus 로고
    • Spark-induced sparks as a mechanism of intracellular calcium alternans in cardiac myocytes
    • Rovetti, R., Cui, X., Garfinkel, A., Weiss, J. N., and Qu, Z. (2010). Spark-induced sparks as a mechanism of intracellular calcium alternans in cardiac myocytes. Circ. Res. 106, 1582-1591.
    • (2010) Circ. Res. , vol.106 , pp. 1582-1591
    • Rovetti, R.1    Cui, X.2    Garfinkel, A.3    Weiss, J.N.4    Qu, Z.5
  • 33
    • 0017905043 scopus 로고
    • A practical algorithm for solving dynamic membrane equations
    • Rush, S., and Larsen, H. (1978). A practical algorithm for solving dynamic membrane equations. IEEE Trans. Biomed. Eng. 25, 389-392.
    • (1978) IEEE Trans. Biomed. Eng. , vol.25 , pp. 389-392
    • Rush, S.1    Larsen, H.2
  • 35
    • 16344373083 scopus 로고    scopus 로고
    • A mathematical treatment of integrated ca dynamics within the ventricular myocyte
    • Shannon, T. R., Wang, F., Puglisi, J., Weber, C., and Bers, D. M. (2004). A mathematical treatment of integrated ca dynamics within the ventricular myocyte. Biophys. J. 87, 3351-3371.
    • (2004) Biophys. J. , vol.87 , pp. 3351-3371
    • Shannon, T.R.1    Wang, F.2    Puglisi, J.3    Weber, C.4    Bers, D.M.5
  • 36
    • 0345413285 scopus 로고    scopus 로고
    • Model of intracellular calcium cycling in ventricular myocytes
    • Shiferaw, Y., Watanabe, M., Garfinkel, A., Weiss, J., and Karma, A. (2003). Model of intracellular calcium cycling in ventricular myocytes. Biophys. I 85, 3666-3686.
    • (2003) Biophys. I , vol.85 , pp. 3666-3686
    • Shiferaw, Y.1    Watanabe, M.2    Garfinkel, A.3    Weiss, J.4    Karma, A.5
  • 38
    • 0033014826 scopus 로고    scopus 로고
    • Examination of the transverse tubular system in living cardiac rat myocytes by 2-photon microscopy and digital image processing techniques
    • Soeller, C., and Cannell, M. B. (1999). Examination of the transverse tubular system in living cardiac rat myocytes by 2-photon microscopy and digital image processing techniques. Circ. Res. 84, 266-275.
    • (1999) Circ. Res. , vol.84 , pp. 266-275
    • Soeller, C.1    Cannell, M.B.2
  • 39
    • 35449002796 scopus 로고    scopus 로고
    • Analysis of ryanodine receptor clusters in rat and human cardiac myocytes
    • Soeller, C., Crossman, D., Gilbert, R., and Cannell, M. B. (2007). Analysis of ryanodine receptor clusters in rat and human cardiac myocytes. Proc. Natl. Acad. Sci. U.S.A. 104, 14958-14963.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 14958-14963
    • Soeller, C.1    Crossman, D.2    Gilbert, R.3    Cannell, M.B.4
  • 41
    • 0001518684 scopus 로고
    • On the construction and comparison of difference schemes
    • Strang, G. (1968). On the construction and comparison of difference schemes. SIAM J. Numer. Anal. 5, 506-517.
    • (1968) SIAM J. Numer. Anal. , vol.5 , pp. 506-517
    • Strang, G.1
  • 43
    • 27744510754 scopus 로고    scopus 로고
    • Excitation-contraction coupling gain and coop-erativity of the cardiac ryanodine receptor: a modeling approach
    • Wang, K., Tu, Y., Rappel, W.-J., and Levine, H. (2005). Excitation-contraction coupling gain and coop-erativity of the cardiac ryanodine receptor: a modeling approach. Biophys. J. 89, 3017-3025.
    • (2005) Biophys. J. , vol.89 , pp. 3017-3025
    • Wang, K.1    Tu, Y.2    Rappel, W.-J.3    Levine, H.4
  • 45
    • 0035005037 scopus 로고    scopus 로고
    • Allosteric regulation of Na/Ca exchange current by cytosolic Ca in intact cardiac myocytes
    • Weber, C. R., Ginsburg, K. S., Philip-son, K. D., Shannon, T. R., and Bers, D. M. (2001). Allosteric regulation of Na/Ca exchange current by cytosolic Ca in intact cardiac myocytes. J. Gen. Physiol. 117, 119-132.
    • (2001) J. Gen. Physiol. , vol.117 , pp. 119-132
    • Weber, C.R.1    Ginsburg, K.S.2    Philip-son, K.D.3    Shannon, T.R.4    Bers, D.M.5
  • 49
    • 50349084950 scopus 로고    scopus 로고
    • Moment closure for local control models of calcium-induced calcium release in cardiac myocytes
    • Williams, G. S., Huertas, M. A., Sobie, E. A., Jafri, M. S., and Smith, G. D. (2008). Moment closure for local control models of calcium-induced calcium release in cardiac myocytes. Biophys. J. 95, 1689-1703.
    • (2008) Biophys. J. , vol.95 , pp. 1689-1703
    • Williams, G.S.1    Huertas, M.A.2    Sobie, E.A.3    Jafri, M.S.4    Smith, G.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.