A phylogeographic investigation of the hybrid origin of a species of swordtail fish from Mexico

Molecular Ecology

Volumn 21, Issue 11, 2012, Pages 2692-2712

  Jones, Julia C ^a   Perez Sato, Juan Antonio ^b   Meyer, Axel ^a  

^a UNIVERSITY OF KONSTANZ   (Germany)

^b Campus Cordoba ^*  (Mexico)

Author keywords

genetic differentiation; hybridization; microsatellite; mtDNA; niche analysis; Xiphophorus

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CHIMERA; FISH; GENE FLOW; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; HYBRIDIZATION; MEXICO; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGEOGRAPHY; POPULATION GENETICS;

ANIMALS; CHIMERA; DNA, MITOCHONDRIAL; FISHES; GENE FLOW; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; HYBRIDIZATION, GENETIC; MEXICO; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGEOGRAPHY;

XIPHOPHORUS; XIPHOPHORUS CLEMENCIAE; XIPHOPHORUS HELLERII; XIPHOPHORUS MACULATUS;

EID: 84861575948     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05571.x     Document Type: Article

References (115)

1. Alvarez J, (1959) Nuevas especies de Xiphophorus e Hyporamphus procedentes del Rio Coatzacoalcos. Ciencia, 19, 69-73.
2. Anderson E, Stebbins GL, (1954) Hybridization as an evolutionary stimulus. Evolution, 8, 378-388.
3. Angienda PO, Lee HJ, Elmer KR, Abila R, Waindi EN, Meyer A, (2011) Genetic structure and gene flow in an endangered native tilapia fish (Oreochromis esculentus) compared to invasive Nile tilapia (Oreochromis niloticus) in Yala swamp, East Africa. Conservation Genetics, 12, 243-255.
4. Arnold ML, (1992) Natural hybridization as an evolutionary process. Annual Review of Ecology and Systematics, 23, 237-261.
5. Arnold ML, (1997) Natural Hybridisation and Evolution. Oxford University Press, Oxford, UK.
6. Arnold ML, Meyer A, (2006) Natural hybridization in primates: one evolutionary mechanism. Zoology, 109, 261-276.
7. Avise JC, (1994) Molecular Markers, Natural History and Evolution. Chapman and Hall, New York City, New York.
8. Avise JC, (2000) Phylogeography-The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
9. Avise JC, (2004) Molecular Markers, Natural History, and Evolution, 2nd edn. Sinauer Associates, Sutherland, Massachusetts.
10. Barrier E, Velasquillo L, Chavez M, Gaulon R, (1998) Neotectonic evolution of the Isthmus of Tehuantepec (southeastern Mexico). Tectonophysics, 287, 77-96.
11. Barton NH, (2001) The role of hybridization in evolution. Molecular Ecology, 10, 551-568.
12. Basolo AL, (1990a) Female preference for male sword length in the green swordtail Xiphophorus hellerii (Pisces: Poeciliidae). Animal Behaviour, 40, 332-338.
13. Basolo AL, (1990b) Female preference predates the evolution of the sword in swordtail fish. Science, 250, 808-810.
14. Basolo AL, (1995a) A further examination of a preexisting bias favoring a sword in the genus Xiphophorus. Animal Behaviour, 50, 365-375.
15. Basolo AL, (1995b) Phylogenetic evidence for the role of a pre-existing bias in sexual selection. Proceedings of the Royal Society of London B, 259, 307-311.
16. Basolo AL, (1997) Evolutionary change in a receiver bias: a comparison of female preference functions. Proceedings of the Royal Society of London B, 265, 2223-2228.
17. Belkhir P, Borsa P, Chikhi L, Raufaste N, Bonhomme F, (2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations, Laboratoire Génome, Populations, Interactions, Université de Montpellier II, Montpellier.
18. Brookfield JFY, (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology, 5, 453-456.
19. Coyne JA, Orr HA, (2004) Speciation. Sinauer, Sunderland.
20. Crapon de Caprona M-D, Ryan MJ, (1990) Conspecific mate recognition in swordtails, Xiphophorus nigrensis and X. pygmaeus (Poeciliidae): olfactory and visual cues. Animal Behaviour, 39, 290-296.
21. Crispo E, Bentzen P, Reznick DN, Kinnison MT, Hendry AP, (2006) The relative influence of natural selection and geography on gene flow in guppies. Molecular Ecology, 15, 49-62.
22. Culumber ZW, Fisher HS, Tobler M, et al. (2011) Replicated hybrid zones of Xiphophorus swordtails along an elevational gradient. Molecular Ecology, 20, 342-356.
23. Darwin CR, (1871) The Descent of Man, and Selection in Relation to Sex. Murray, London.
24. DeWoody JA, Avise JC, (2000) Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish Biology, 56, 461-473.
25. Doledec S, Chessel D, Gimaret-Carpentier C, (2000) Niche separation in community analysis: a new method. Ecology, 81, 2914-2927.
26. Dowling TE, Secor C, (1997) The role of hybridization and introgression in the diversification of animals. Annual Review of Ecology and Systematics, 28, 593-619.
27. Escoufier Y, (1987) The duality diagram: a means of better practical applications. In: Development in Numerical Ecology (eds, Legendre P, Legendre L,), pp. 139-156. Springer Verlag, Berlin.
28. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
29. Excoffier L, Laval G, Schneider S, (2005) Arlequin (version 3.0): an integrated software package for population genetic analysis. Evolutionary Bioinformatics Online, 1, 47-50.
30. Fajen A, Breden F, (1992) Mitochondrial DNA sequence variation among natural populations of the Trinidad guppy. Evolution, 46, 1457-1465.
31. Fisher HS, Rosenthal, (2010) Relative abundance of Xiphophorus fishes and its effect on sexual communication. Ethology, 116, 32-38.
32. Fisher RA, (1930) The Genetical Theory of Natural Selection. Clarendon Press, Oxford.
33. Frankham R, (1996) Relationship of genetic variation to population size in wildlife. Conservation Biology, 10, 1500-1508.
34. Giraudoux P, (2010). Pgirmess: data analysis in ecology.
35. Goudet J, (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86, 485-486.
36. Gutiérrez-Rodríguez C, Morris MR, Dubois NS, de Queiroz K, (2007) Genetic variation and phylogeography of the swordtail fish Xiphophorus cortezi (Cyprinodontiformes, Poeciliidae). Molecular Phylogenetics and Evolution, 43, 111-123.
37. Hankison SJ, Morris MR, (2003) Avoiding a compromise between sexual selection and species recognition: female swordtail fish assess multiple species-specific cues. Behavioral Ecology, 14, 282-287.
38. Hayden B, Pulcini D, Kelly-Quinn M, et al. (2010) Hybridisation between two cyprinid fishes in a novel habitat: genetics, morphology and life-history traits. BMC Evolutionary Biology, 10, 169-180.
39. Heckel JJ, (1848) Eine neue Gattung von Poecilien mit rochenartigem Anklammerungs-Organe. Atlas zu der Reise im nördlichen Africa. Fische des Rothen Meeres. V1 (pt1-5), 289-303.
40. Houde AE, (1997) Sex, Color, and Mate Choice in Guppies. Princeton University Press, Princeton, New Jersey.
41. Hrbek T, Seckinger J, Meyer A, (2007) A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes. Molecular Phylogenetics and Evolution, 43, 986-998.
42. Hubbs CL, (1955) Hybridisation between fish species in nature. Systematic Zoology, 4, 1-20.
43. Kalinowski ST, (2010) The computer program structure does not reliably identify the main genetic clusters within species: simulations and implications for human population structure. Heredity, 106, 625-632.
44. Kallman KD, Kazianis S, (2006) The genus Xiphophorus in Mexico and Central America. Zebrafish, 3, 271-285.
45. Kallman KD, Walter RB, Morizot DC, Kazianis S, (2004) Two new species of Xiphophorus (Poeciliidae) from the Isthmus of Tehuantepec, Oaxaca, Mexico, with a discussion of the distribution of the X. clemenciae clade. American Museum Novitates, 3441, 1-34.
46. Kirkpatrick M, Ryan MJ, (1991) The evolution of mating preferences and the paradox of the lek. Nature, 350, 33-38.
47. Koblmüller S, Salzburger W, Sturmbauer C, (2004) Evolutionary relationships in the sand-dwelling cichlid lineage of Lake Tanganyika suggest multiple colonization of rocky habitats and convergent origin of biparental mouthbrooding. Journal of Molecular Evolution, 60, 277-289.
48. Koblmüller S, Duftner N, Sefc KM, et al. (2007) Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika-the result of repeated introgressive hybridization. BMC Evolutionary Biology, 7, 7-20.
49. Koblmüller S, Egger B, Sturmbauer C, Sefc KM, (2010) Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini. Molecular Phylogenetics and Evolution, 55, 318-334.
50. Kramer DL, (1987) Dissolved oxygen and fish behavior. Environmental Biology of Fishes, 18, 81-92.
51. Lee WJ, Conroy J, Howell WH, Kocher TD, (1995) Structure and evolution of teleost mitochondrial control regions. Journal of Molecular Biology, 40, 1-13.
52. Lewontin RC, Birch LC, (1966) Hybridization as a source of variation for adaptation to new environments. Evolution, 20, 315-336.
53. Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
54. Magurran AE, (2005) Evolutionary Ecology: The Trinidadian Guppy. Oxford University Press, Oxford.
55. Mallet J, (2005) Hybridization as an invasion of the genome. Trends in Ecology and Evolution, 20, 229-236.
56. Mallet J, (2007) Hybrid speciation. Nature, 446, 279-283.
57. Mayr E, (1942) Systematics and the Origin of Species. Columbia University Press, New York City, New York.
58. Mayr E, (1963) Animal Species and Evolution. Belknap Press, Cambridge, Massachusetts.
59. McLennan DA, Ryan MJ, (1997) Responses to conspecific and heterospecific olfactory cues in the swordtail Xiphophorus cortezi. Animal Behaviour, 54, 1077-1088.
60. McLennan DA, Ryan MJ, (1999) Interspecific recognition and discrimination based upon olfactory cues in northern swordtails. Evolution, 53, 880-888.
61. Mesquita N, Hänfling B, Carvalho GR, Coelho MM, (2005) Phylogeography of the cyprinid Squalius aradensis and implications for conservation of the endemic freshwater fauna of southern Portugal. Molecular Ecology, 14, 1939-1954.
62. Meyer A, (1997) The evolution of sexually selected traits in male swordtail fishes (Xiphophorus: Poeciliidae). Heredity, 79, 329-337.
63. Meyer A, Morrissey JM, Schartl M, (1994) Recurrent origin of a sexually selected trait in Xiphophorus fishes inferred from molecular phylogeny. Nature, 386, 539-542.
64. Meyer A, Salzburger W, Schartl M, (2006) Hybrid origin of a swordtail species (Teleostei: Xiphophorus clemenciae) driven by sexual selection. Molecular Ecology, 15, 721-730.
65. Moritz C, (1994) Defining 'evolutionary significant units' for conservation. TREE, 9, 373-375.
66. Mortiz C, (2002) Strategies to protect biological diversity and the evolutionary processes that sustain it. Systematic Biology, 51, 238-254.
67. Nosil P, Harmon LJ, Seehausen O, (2009) Ecological explanations for (incomplete) speciation. Trends in Ecology and Evolution, 24, 145-156.
68. Nyingi DW, Agnése J-F, (2007) Recent introgressive hybridization revealed by exclusive mtDNA transfer from Oreochromis leucostictus (Trewavas, 1933) to Oreochromis niloticus (Linnaeus, 1758) in Lake Baringo, Kenya. Journal of Fish Biology, 70, 148-154.
69. van Oosterhout C, Hutchison WF, Wills DPM, Shipley P, (2004) Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
70. Petit RJ, El Mousadik A, Pons O, (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
71. Pianka ER, (1973) The structure of lizard communities. Annual Review of Ecology and Systematics, 4, 53-74.
72. Posada D, Crandall K, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
73. Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
74. Quattro JM, Vrijenhoek RC, (1989) Fitness differences among remnant populations of the endangered sonoran topminnow. Science, 248, 976-978.
75. Quattro JM, Leberg PL, Douglas ME, Vrijenhoek RC, (1996) Molecular evidence for a unique evolutionary lineage of endangered Sonoran desert fish (genus Poeciliopsis). Conservation Biology, 10, 128-135.
76. R Development Core Team. (2010) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
77. Ramirez EM, (1999) Taxonomia y zoogeografia de la ictiofauna dulceacuicola del Estado de Oaxaca, Mexico. Ph.D. thesis. Departmento de Ecologia, Universidad de Barcelona.
78. Reyer H-U, (2008) Mating with the wrong species can be right. Trends in Ecology and Evolution, 23, 289-292.
79. Rosen DE, (1960) Middle-American poeciliid fishes of the genus Xiphophorus. Bulletin of the Florida State Museum, 5, 57-242.
80. Rosenthal GG, Evans CS, (1998) Female preference for swords in Xiphophorus hellerii reflects a bias for large apparent size. Proceedings of the National Academy of Science USA, 95, 4431-4436.
81. Rosenthal GG, García de Leõn FJ, (2011) Speciation and hybridization. In: Ecology and Evolution of Poeciliid Fishes (eds, Schlupp I, Pilastro A, Evans J,), University of Chicago Press, Chicago, Illinois.
82. Rosenthal GG, Wagner WE Jr, Ryan MJ, (2002) Secondary reduction of preference for the sword ornament in the pygmy swordtail Xiphophorus nigrensis (Pisces: Poeciliidae). Animal Behaviour, 63, 37-45.
83. Rousset F, (2008) Genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
84. Ryan MJ, Wagner WEJ, (1987) Asymmetries in mating preferences between species: female swordtails prefer heterospecific males. Science, 236, 595-597.
85. Salgueiro P, Carvalho G, Collares-Pereira MJ, Coelho MM, (2003) Microsatellite analysis of genetic population structure of the endangered cyprinid Anaecypris hispanica. Portugal: implications for conservation. Biological Conservation, 109, 47-56.
86. Salzburger W, Baric S, Sturmbauer C, (2002a) Speciation via introgressive hybridization in East African cichlids? Molecular Ecology, 11, 616-625.
87. Salzburger W, Meyer A, Baric S, Verheyen E, Sturnbauer C, (2002b) Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the central and east African haplochromine cichlid fish faunas. Systematic Biology, 51, 113-135.
88. Salzburger W, Brandstätter A, Gilles A, et al. (2003) Phylogeography of the varione (Leuciscus souffia, Risso 1826) in Central Europe. Molecular Ecology, 12, 2371-2386.
89. Schartl M, (1995a) Model systems for the study of genetic factors in cancer formation. Naturwissenschaften, 82, 209-218.
90. Schartl A, Dimitrijevic N, Schartl M, (1994) Evolutionary origin and molecular biology of the melanoma-inducing oncogene of Xiphophorus. Pigment Cell Research, 7, 428-432.
91. Schelly R, Salzburger W, Kolbmüller S, Duftner N, Sturmbauer C, (2006) Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization. Molecular Phylogenetics and Evolution, 38, 426-438.
92. Schlupp I, Riesch R, Tobler M, Plath M, Parzefall J, Schartl M, (2010) A novel, sexually selected trait in poeciliid fishes: female preference for mustache-like, rostral filaments in male Poecilia sphenops. Behavioural Ecology and Sociobiology, 64, 1849-1855.
93. Schories S, Meyer MK, Schartl M, (2009) Description of Poecilia (Acanthophacelus) obscura n. sp., (Teleostei: Poeciliidae), a new guppy species from western Trinidad, with remarks on P. wingei and the status of the "Endler's guppy". Zootaxa, 2266, 35-50.
94. Scribner KT, Page KS, Bartron M, (2001) Hybridization in freshwater fishes: a review of case studies and cytonuclear methods of biological inference. Reviews in Fish Biology and Fisheries, 10, 293-323.
95. Seehausen O, (2004) Hybridization and adaptive radiation. Trends in Ecology and Evolution, 19, 198-207.
96. 1 interspecies hybrids. Comparative Biochemistry and Physiology, Part C: Toxicology and Pharmacology.
97. Soltis PS, Soltis DE, (2009) The role of hybridization in plant speciation. Annual Review of Plant Biology, 60, 561-588.
98. Stefanni S, Thorley JL, (2003) Mitochondrial DNA phylogeography reveals the existence of an evolutionary significant unit of the sand goby Pomatoschistus minutes in the Adriatic (Eastern Mediterranean). Molecular Phylogenetics and Evolution, 28, 601-609.
99. Streelman JT, Gmyrek SL, Kidd MR, et al. (2004) Hybridization and contemporary evolution in an introduced cichlid fish from Lake Malawi National Park. Molecular Ecology, 13, 2471-2479.
100. Swofford DL, (2003) PAUP. Phylogenetic Analysis Using Parsimony (and Other Methods), Version 4. Sinauer Associates, Sunderland, Massachusetts.
101. Tatarenkov A, Healey CIM, Grether GF, Avise JC, (2008) Pronounced reproductive skew in a natural population of green swordtails, Xiphophorus helleri. Molecular Ecology, 17, 4522-4534.
102. Tatarenkov A, Healey CIM, Avise JC, (2010) Microgeographic population structure of green swordtail fish: genetic differentiation despite abundant migration. Molecular Ecology, 19, 257-268.
103. Templeton AR, (1981) Mechanisms of speciation-a population genetic approach. Annual Review of Ecology and Systematics, 12, 23-48.
104. Tripathi N, Hoffmann M, Willing E-M, Lanz C, Weigel D, Dreyer C, (2009) Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proceedings of the Royal Society of London B, 276, 2195-2208.
105. von der Heyden S, Lipinski MR, Matthee A, (2010) Remarkably low mtDNA control region diversity in an abundant demersal fish. Molecular Phylogenetics and Evolution, 55, 1183-1188.
106. Vrijenhoek RC, Douglas MC, Meffe GK, (1985) Conservation genetics of endangered fish populations in Arizona. Science, 229, 400-402.
107. Wagner WE Jr, Ryan MJ, (1987) Asymmetries in mating preferences between species: female swordtails prefer heterospecific males. Science, 236, 595-597.
108. Walsh PS, Metzger DA, Higuchi R, (1991) Chelex ® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques, 10, 506-513.
109. Ward RD, Woodwark M, Skbinski DOF, (1994) A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. Journal of Fish Biology, 44, 231-232.
110. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN, (2005) DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B, 360, 1847-1857.
111. Weir BS, Cockerham CC, (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
112. Whitney KD, Ahern JR, Campbell LG, Albert LP, King MS, (2010) Patterns of hybridization in plants. Perspectives in Plant Ecology, Evolution and Systematics, 12, 175-182.
113. Willing E-M, Bentzen P, Van Oosterhout C, et al. (2010) Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology, 19, 968-984.
114. Wright S, (1943) Isolation by distance. Genetics, 28, 114-138.
115. Zhang Z, Wang Y, Wang S, et al. (2011) Transcriptome analysis of female and male Xiphophorus maculatus Jp 163 A. PLoS ONE, 6, e18379.