Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika - The result of repeated introgressive hybridization

BMC Evolutionary Biology

Volumn 7, Issue , 2007, Pages

  Koblmüller, Stephan ^a   Duftner, Nina ^b   Sefc, Kristina M ^a   Aibara, Mitsuto ^c   Stipacek, Martina ^a   Blanc, Michel ^a   Egger, Bernd ^a   Sturmbauer, Christian ^a  

^a UNIVERSITY OF GRAZ   (Austria)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^c TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BREEDING; CICHLID; CONTROLLED STUDY; ECOLOGY; FEMALE; FERTILIZATION; GASTROPOD; HYBRIDIZATION; INTROGRESSION; MALE; MORPHOLOGY; NONHUMAN; PHYLOGENY; SPERM; TANZANIA; ZYGOTE; ANIMAL; DNA FINGERPRINTING; GENETICS; PROCEDURES;

CICHLIDAE; GASTROPODA; LAMPROLOGINI;

ANIMALS; BREEDING; CICHLIDS; DNA FINGERPRINTING; GASTROPODA; MICROSATELLITE REPEATS; PHYLOGENY; TANZANIA;

EID: 33846673593     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-7     Document Type: Article

References (65)

1. Phylogeny of the Lake Tanganyika cichlid species flock and its relationships to Central- and East African haplochromine cichlid fish faunas. W Salzburger A Meyer S Baric E Verheyen C Sturmbauer, Syst Biol 2002 51 113 135 10.1080/106351502753475907 11943095
2. Classification des cichlidae du lac Tanganika. Tribus, genres et espèces. M Poll, Acad R Belg Mem Cl Sci 1986 45 1 163
3. Shell-brooding cichlid fishes of Lake Tanganyika: their habitats and mating systems. T Sato MM Gashagaza, Fish Communities in Lake Tanganyika Kyoto: Kyoto University Press, Kawanabe H, Hori M, Nagoshi M, 1997 219 240
4. Eigenheim aus zweiter Hand: Buntbarsche in Schneckenhäusern. HH Büscher, DATZ - spezial issue 1998 6 51 59
5. Mitochondrial phylogeny of the Lamprologini, the major substrate spawning lineage of cichlid fishes from Lake Tanganyika in Eastern Africa. C Sturmbauer E Verheyen A Meyer, Mol Biol Evol 1994 11 691 703 8078408
6. A phylogenetic overview of the lamprologine cichlids of Africa (Teleostei, Cichlidae): a morphological perspective. MLJ Stiassny, S Afr J Sci 1997 93 513 523
7. Sperm competition in fish: 'bourgeois' males and parasitic spawning. M Taborsky, Trends Ecol Evol 1998 13 222 227 10.1016/S0169-5347(97)01318-9
8. Phylogenetic relationships of the lamprologine cichlid genus Lepidiolamprologus (Teleostei: Perciformes) based on mitochondrial and nuclear sequences, suggesting introgressive hybridization. R Schelly W Salzburger S Koblmüller N Duftner C Sturmbauer, Mol Phylogenet Evol 2006 38 426 438 10.1016/j.ympev.2005.04.023 15964213
9. Evolutionary relationships in the sand dwelling cichlid lineage of Lake Tanganyika suggest multiple colonization of rocky habitats and convergent origin of biparental mouthbrooding. S Koblmüller W Salzburger C Sturmbauer, J Mol Evol 2004 58 79 96 10.1007/s00239-003-2527-1 14743316
10. Ancient divergence in bathypelagic deepwater cichlids: mitochondrial phylogeny of the tribe Bathybatini. S Koblmüller N Duftner C Katongo H Phiri C Sturmbauer, J Mol Evol 2005 60 297 314 10.1007/s00239-004-0033-8 15871041
11. Evolutionary relationships of the Limnochromini, a tribe of benthic deepwater cichlid fish endemic to Lake Tanganyika, East Africa. N Duftner S Koblmüller C Sturmbauer, J Mol Evol 2005 60 277 289 10.1007/s00239-004- 0017-8 15871039
12. Molecular evidence for recent divergence of Lake Tanganyika endemic crabs (Decapoda: Platythelphusidae). SA Marijnissen E Michel SR Daniels D Erpenbeck SB Menken FR Schram, Mol Phylogenet Evol 2006 40 628 634 10.1016/j.ympev.2006. 03.025 16647274
13. Closing the Indonesian seaway as a precursor to East African aridification around 3-4 million years ago. MA Cane P Molnar, Nature 2001 411 157 162 10.1038/35075500 11346785
14. A Konings, Tanganyika Cichlids in Their Natural Habitat El Paso: Cichlid Press 1998
15. Phylogenetic relationships and ancient incomplete lineage sorting among cichlid fishes in Lake Tanganyika as revealed by analysis of the insertion of retroposons. K Takahashi Y Terai M Nishida N Okada, Mol Biol Evol 2001 18 2057 2066 11606702
16. Is homoplasy or lineage sorting the source of incongruent mtDNA and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)? KG McCracken MD Sorenson, Syst Biol 2005 54 35 55 10.1080/10635150590910249 15805009
17. Retention of ancestral polymorphism in the mbuna species flock (Pisces: Cichlidae) of Lake Malawi. P Moran I Kornfield, Mol Biol Evol 1993 10 1015 1029
18. Evolution of the mitochondrial DNA control region in the mbuna (Cichlidae) species flock of Lake Malawi, East Africa. A Parker I Kornfield, J Mol Evol 1997 45 70 83 10.1007/PL00006204 9211737
19. Persistence of neutral polymorphisms in Lake Victoria cichlid fish. S Nagl H Tichy WE Meyer N Takahata J Klein, Proc Natl Acad Sci USA 1998 95 14238 14243 9826684 10.1073/pnas.95.24.14238
20. Extensive homoplasy, nonstepwise mutations, and shared ancestral polymorphism at a complex microsatellite locus in Lake Malawi cichlids. MJ Van Oppen C Rico GF Turner GM Hewitt, Mol Biol Evol 2000 17 489 498 10742041
21. Predicting nuclear gene coalescence from mitochondrial data: the three-times rule. SR Palumbi F Cipriano MP Hare, Evolution 2001 55 869 868 10.1554/0014-3820(2001)055[0859:PNGCFM]2.0.CO;2 11430647
22. Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa. RC Albertson JA MArkert PD Danley TD Kocher, Proc Natl Acad Sci USA 1999 96 5107 5110 10220426 10.1073/pnas.96.9.5107
23. Divergent selection during speciation of Lake Malawi cichlid fishes inferred from parallel radiations in nuptial coloration. CJ Allender O Seehasuen ME Knight GF Turner N Maclean, Proc Natl Acad Sci USA 2003 100 14074 14079 14614144 10.1073/pnas.2332665100
24. Nuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species flock. O Seehausen E Koetsier MV Schneider LJ Chapman CA Chapman ME Knight GF Turner HHM van Alphen R Bills, Proc R Soc Lond B Biol Sci 2003 270 129 37 10.1098/rspb.2002. 2153
25. E Mayr, Animal Species and Evolution Cambridge: Harvard University Press 1963
26. Evolution of the tribe Tropheini from Lake Tanganyika: synchronized explosive speciation producing multiple evolutionary parallelism. C Sturmbauer S Hainz S Baric E Verheyen W Salzburger, Hydrobiologia 2004 500 51 64 10.1023/A:1024680201436
27. Mitochondrial phylogeny of the Cyprichromini, a lineage of open-water cichlid fishes endemic to Lake Tanganyika, East Africa. A Brandstätter W Salzburger C Sturmbauer, Mol Phylogenet Evol 2005 34 382 391 10.1016/j.ympev.2004.10.019 15619449
28. Phylogeographic patterns in populations of cichlid fishes from rocky habitats in Lake Tanganyika. C Sturmbauer E Verheyen L Rüber A Meyer, Molecular Phylogeny of Fishes New York: Academic Press, Kocher TD, Stepien C, 1997 97 111
29. Phylogeographic history of the genus Tropheus, a lineage of rock-dwelling cichlid fishes endemic to Lake Tanganyika. C Sturmbauer S Koblmüller KM Sefc N Duftner, Hydrobiologia 2005 542 335 366 10.1007/s10750-004-4664-y
30. Population structure in two sympatric species of the Lake Tanganyika cichlid tribe Eretmodini: evidence for introgression. L Rüber A Meyer C Sturmbauer E Verheyen, Mol Ecol 2001 10 1207 1225 10.1046/j.1365-294X.2001. 01259.x 11380878
31. Speciation via introgressive hybridization in East African cichlids? W Salzburger S Baric C Sturmbauer, Mol Ecol 2002 11 619 625 10.1046/j.0962-1083. 2001.01438.x 11918795
32. Cichlid Fish Diversity Threatened by Eutrophication That Curbs Sexual Selection. O Seehausen JJM van Alphen F Witte, Science 1997 277 1808 1811 10.1126/science.277.5333.1808
33. Hybridization and contemporary evolution in an introduced cichlid fish from Lake Malawi National Park. JT Streelman SL Gmyrek MR Kidd C Kidd RL Robinson E Hert AJ Ambali TD Kocher, Mol Ecol 2004 13 2471 2479 10.1111/j.1365-294X.2004.02240.x 15245419
34. Conservation: losing biodiversity by reverse speciation. O Seehausen, Curr Biol 2006 16 R334 R337 10.1016/j.cub.2006.03.080 16682344
35. Hybrid origins of plant species. LH Rieseberg, Ann Rev Ecol Syst 1997 28 359 389 10.1146/annurev.ecolsys.28.1.359
36. The role of hybridization and introgression in the diversification of animals. TE Dowling C Secor, Ann Rev Ecol Syst 1997 28 593 619 10.1146/annurev.ecolsys.28.1.593
37. Hybrid origin of a cichlid population in Lake Malawi: implications for genetic variation and species diversity. PF Smith A Konings I Kornfield, Mol Ecol 2003 12 2497 2504 10.1046/j.1365-294X.2003.01905.x 12919487
38. Reticulate sympatric speciation in Cameroonian crater lake cichlids. UK Schliewen B Klee, Front Zool 2004 1 5 15679917 10.1186/1742-9994-1-5
39. Hybridization and adaptive radiation. O Seehausen, Trends Ecol Evol 2004 19 198 207 10.1016/j.tree.2004.01.003 16701254
40. Transgressive segregation, adaptation and speciation. LH Rieseberg MA Archer RK Wayne, Heredity 1999 83 363 372 10.1038/sj.hdy.6886170 10583537
41. Lake level fluctuations synchronize genetic divergence of cichlid fishes in African lakes. C Sturmbauer S Baric W Salzburger L Rüber E Verheyen, Mol Biol Evol 2001 18 144 154 11158373
42. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. PS Walsh DA Metzger R Higuchi, Biotechniques 1991 10 506 513 1867860
43. Evolution of NADH dehydrogenase in East African cichlid fish. TD Kocher JA Conroy KR McKaye JR Staufer SF Lockwood, Mol Phylogenet Evol 1995 4 420 432 10.1006/mpev.1995.1039 8747298
44. MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 10.1093/bioinformatics/14.9.817 9918953
45. DL Swofford, PAUP* - Phylogenetic Analysis Using Parsimony and other methods, version 4.0 Sunderland: Sinauer 2003
46. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. K Tamura M Nei, Mol Biol Evol 1993 10 512 526 8336541
47. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. K Strimmer A von Haeseler, Mol Biol Evol 1996 13 964 969
48. MrBayes: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
49. Phylogenetic test of the molecular clock and linearized trees. N Takezaki A Rzhetsky M Nei, Mol Biol Evol 1995 12 823 833 7476128
50. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. HA Schmidt K Strimmer M Vingron A von Haeseler, Bioinformatics 2002 18 502 504 10.1093/bioinformatics/18.3.502 11934758
51. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. H Kishino M Hasegawa, J Mol Evol 1989 29 170 179 10.1007/BF02100115 2509717
52. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. H Shimodeira M Hasegawa, Mol Biol Evol 1999 16 1114 1116
53. AFLP: a new technique for DNA fingerprinting. P Vos R Hogers M Bleeker M Reijans T van de Lee M Hornes A Frijters J Pot J Peleman M Kuiper, Nucleic Acid Res 1995 23 4407 4414 7501463 10.1093/nar/23.21.4407
54. Mathematical model for studying genetic variation in terms of restriction endonucleases. M Nei WH Li, Proc Natl Acad Sci USA 1979 76 5269 5273 291943 10.1073/pnas.76.10.5269
55. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Y Van de Peer R de Wachter, Comput Appl Biosci 1994 10 569 570 7828077
56. Fishes of the Great Lakes region. CL Hubbs KF Lagler, Bull Cranbrook Inst Sci 1958 26
57. An introduction to the taxonomy and morphology of the haplochromine Cichlidae from Lake Victoria. CDN Barel MJP van Oijen F Witte ELM Witte-Maas, Neth J Zool 1977 27 333 389
58. Isolation and characterization of microsatellite loci in the cichlid fish Pseudotropheus zebra. MJH Van Oppen C Rico TC Deutsch GF Turner GM Hewit, Mol Ecol 1997 6 387 388 10.1046/j.1365-294X.1997.00188.x 9131814
59. Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid fishes (Pisces: Perciformes). R Zardoya DM Vollmer C Craddock JT Streelman S Karl A Meyer, Proc R Soc Lond B 1996 263 1589 1598 10.1098/rspb.1996.0233
60. Microsatellite analysis demonstrates multiple paternity in lekking cichlid fishes from Lake Malawi, Africa. KA Kellogg JA Markert JR Stauffer TD Kocher, Proc R Soc Lond B 1995 260 79 84 10.1098/rspb.1995.0062
61. Rapid isolation of CA microsatellites from the tilapia genome. KL Carleton JT Streelman BY Lee N Garnhart M Kidd TD Kocher, Anim Genet 2002 33 140 144 10.1046/j.1365-2052.2002.00817.x 12047227
62. Distinct population structure in a phenotypically homogeneous rock-dwelling cichlid fish from Lake Tanganyika. N Duftner KM Sefc S Koblmüller B Nevado E Verheyen H Phiri C Sturmbauer, Mol Ecol 2006 15 2381 2395 10.1111/j.1365-294X.2006.02949.x 16842413
63. Description of Lamprologus laparogramma sp. nov., and rediagnosis of Lamprologus signatus Poll 1956 and Lamprologus kungweensis Poll with notes on their ecologs and behaviour (Teleostei: Cichlidae). R Bills AJ Ribbink, S Afr J Sci 1952 93 555 564
64. The evolution of parental care and mating systems among Tanganyikan cichlids. T Kuwamura, Fish Communities in Lake Tanganyika Kyoto: Kyoto University Press, Kawanabe H, Hori M, Nagoshi M, 1997 57 86
65. A Konings, Das Back to Nature Handbuch für Tanganjika-Buntbarsche Ettlingen: Dähne Verlag GmBH 2 2005