-
1
-
-
33646869457
-
Structure-function properties of prolyl oligopeptidase family enzymes
-
Rea D, Fülöp V, (2006) Structure-function properties of prolyl oligopeptidase family enzymes. Cell Biochem Biophys 44: 349-365.
-
(2006)
Cell Biochem Biophys
, vol.44
, pp. 349-365
-
-
Rea, D.1
Fülöp, V.2
-
2
-
-
0036178438
-
The Prolyl oligopeptidase family
-
Polgar L, (2002) The Prolyl oligopeptidase family. Cell Mol Life Sci 59: 349-362.
-
(2002)
Cell Mol Life Sci
, vol.59
, pp. 349-362
-
-
Polgar, L.1
-
4
-
-
0018152034
-
Purification and partial characterization of alpha-N-acylpeptide hydrolase from bovine liver
-
Gade W, Brown JL, (1978) Purification and partial characterization of alpha-N-acylpeptide hydrolase from bovine liver. J Biol Chem 253: 5012-5018.
-
(1978)
J Biol Chem
, vol.253
, pp. 5012-5018
-
-
Gade, W.1
Brown, J.L.2
-
5
-
-
0027265970
-
Bovine lens acylpeptide hydrolase. Purification and characterization of a tetrameric enzyme resistant to urea denaturation and proteolytic inactivation
-
Sharma KK, Ortwerth BJ, (1993) Bovine lens acylpeptide hydrolase. Purification and characterization of a tetrameric enzyme resistant to urea denaturation and proteolytic inactivation. Eur J Biochem 216: 631-637.
-
(1993)
Eur J Biochem
, vol.216
, pp. 631-637
-
-
Sharma, K.K.1
Ortwerth, B.J.2
-
6
-
-
33947724046
-
The Acylaminoacyl Peptidase from Aeropyrum pernix K1 Thought to Be an Exopeptidase Displays Endopeptidase Activity
-
Kiss AL, Hornung B, Rádi K, Gengeliczki Z, Sztáray B, et al. (2007) The Acylaminoacyl Peptidase from Aeropyrum pernix K1 Thought to Be an Exopeptidase Displays Endopeptidase Activity. J Mol Biol 368: 509-520.
-
(2007)
J Mol Biol
, vol.368
, pp. 509-520
-
-
Kiss, A.L.1
Hornung, B.2
Rádi, K.3
Gengeliczki, Z.4
Sztáray, B.5
-
7
-
-
0032504210
-
Acylamino Acid-releasing Enzyme from the Thermophilic Archaeon Pyrococcus horikoshii
-
Ishikawa K, Ishida H, Koyama Y, Kawarabayasi Y, Kawaharai J, et al. (1998) Acylamino Acid-releasing Enzyme from the Thermophilic Archaeon Pyrococcus horikoshii. J Biol Chem 273: 17726-17731.
-
(1998)
J Biol Chem
, vol.273
, pp. 17726-17731
-
-
Ishikawa, K.1
Ishida, H.2
Koyama, Y.3
Kawarabayasi, Y.4
Kawaharai, J.5
-
8
-
-
67349149206
-
Characterization of a novel acylaminoacyl peptidase with hexameric structure and endopeptidase activity
-
Szeltner Z, Kiss AL, Domokos K, Harmat V, Náray-Szabó G, et al. (2009) Characterization of a novel acylaminoacyl peptidase with hexameric structure and endopeptidase activity. Biochim Biophys Acta 1794: 1204-1210.
-
(2009)
Biochim Biophys Acta
, vol.1794
, pp. 1204-1210
-
-
Szeltner, Z.1
Kiss, A.L.2
Domokos, K.3
Harmat, V.4
Náray-Szabó, G.5
-
9
-
-
78149445520
-
A novel class of protease targets of phosphatidylethanolamine-binding proteins (PEBP): a study of the acylpeptide hydrolase and the PEBP inhibitor from the archaeon Sulfolobus solfataricus
-
Palmieri G, Langella E, Gogliettino M, Saviano M, Pocsfalvi G, et al. (2010) A novel class of protease targets of phosphatidylethanolamine-binding proteins (PEBP): a study of the acylpeptide hydrolase and the PEBP inhibitor from the archaeon Sulfolobus solfataricus. Mol BioSyst 6: 2498-2507.
-
(2010)
Mol BioSyst
, vol.6
, pp. 2498-2507
-
-
Palmieri, G.1
Langella, E.2
Gogliettino, M.3
Saviano, M.4
Pocsfalvi, G.5
-
10
-
-
0023664803
-
Acyl-peptide hydrolase from rat liver. Characterization of enzyme reaction
-
Kobayashi K, Smith JA, (1987) Acyl-peptide hydrolase from rat liver. Characterization of enzyme reaction. J Biol Chem 262: 11435-11445.
-
(1987)
J Biol Chem
, vol.262
, pp. 11435-11445
-
-
Kobayashi, K.1
Smith, J.A.2
-
11
-
-
0033049327
-
Cloning, sequencing and further characterization of acylpeptide hydrolase from porcine intestinal mucosa
-
Raphel V, Giardina T, Guevel L, Perrier J, Dupuis L, et al. (1999) Cloning, sequencing and further characterization of acylpeptide hydrolase from porcine intestinal mucosa. Biochim Biophys Acta 1432: 371-381.
-
(1999)
Biochim Biophys Acta
, vol.1432
, pp. 371-381
-
-
Raphel, V.1
Giardina, T.2
Guevel, L.3
Perrier, J.4
Dupuis, L.5
-
12
-
-
0026672237
-
Acylpeptide hydrolase: inhibitors and some active site residues of the human enzyme
-
Scaloni A, Jones WM, Barra D, Pospischil M, Sassa S, et al. (1992) Acylpeptide hydrolase: inhibitors and some active site residues of the human enzyme. J Biol Chem 267: 3811-3818.
-
(1992)
J Biol Chem
, vol.267
, pp. 3811-3818
-
-
Scaloni, A.1
Jones, W.M.2
Barra, D.3
Pospischil, M.4
Sassa, S.5
-
13
-
-
23044509196
-
Catabolism of intracellular N-terminal acetylated proteins: involvement of acylpeptide hydrolase and acylase
-
Perrier J, Durand A, Giardina T, Puigserver A, (2005) Catabolism of intracellular N-terminal acetylated proteins: involvement of acylpeptide hydrolase and acylase. Biochimie 87: 673-685.
-
(2005)
Biochimie
, vol.87
, pp. 673-685
-
-
Perrier, J.1
Durand, A.2
Giardina, T.3
Puigserver, A.4
-
14
-
-
0032560950
-
Characterization of membrane-bound serine protease related to degradation of oxidatively damaged erythrocyte membrane proteins
-
Fujino T, Ishikawa T, Inoue M, Beppu M, Kikugawa K, (1998) Characterization of membrane-bound serine protease related to degradation of oxidatively damaged erythrocyte membrane proteins. Biochim Biophys Acta 1374: 47-55.
-
(1998)
Biochim Biophys Acta
, vol.1374
, pp. 47-55
-
-
Fujino, T.1
Ishikawa, T.2
Inoue, M.3
Beppu, M.4
Kikugawa, K.5
-
15
-
-
0034673624
-
Identification of oxidized protein hydrolase of human erythrocytes as acylpeptide hydrolase
-
Fujino T, Watanabe K, Beppu M, Kikugawa K, Yasuda H, (2000) Identification of oxidized protein hydrolase of human erythrocytes as acylpeptide hydrolase. Biochim Biophys Acta 1478: 102-112.
-
(2000)
Biochim Biophys Acta
, vol.1478
, pp. 102-112
-
-
Fujino, T.1
Watanabe, K.2
Beppu, M.3
Kikugawa, K.4
Yasuda, H.5
-
16
-
-
0037449174
-
Overexpression of oxidized protein hydrolase protects COS-7 cells from oxidative stress-induced inhibition of cell growth and survival
-
Shimizu K, Fujino T, Ando K, Hayakawa M, Yasuda H, et al. (2003) Overexpression of oxidized protein hydrolase protects COS-7 cells from oxidative stress-induced inhibition of cell growth and survival. Biochem Biophys Res Com 304: 766-771.
-
(2003)
Biochem Biophys Res Com
, vol.304
, pp. 766-771
-
-
Shimizu, K.1
Fujino, T.2
Ando, K.3
Hayakawa, M.4
Yasuda, H.5
-
17
-
-
4744365659
-
Coordination of oxidized protein hydrolase and the proteasome in the clearance of cytotoxic denatured proteins
-
Shimizu K, Kiuchi Y, Ando K, Hayakawa M, Kikugawa K, (2004) Coordination of oxidized protein hydrolase and the proteasome in the clearance of cytotoxic denatured proteins. Biochem Biophys Res Com 324: 140-146.
-
(2004)
Biochem Biophys Res Com
, vol.324
, pp. 140-146
-
-
Shimizu, K.1
Kiuchi, Y.2
Ando, K.3
Hayakawa, M.4
Kikugawa, K.5
-
18
-
-
33845763797
-
Acyl peptide hydrolase, a serine proteinase isolated from conditioned medium of neuroblastoma cells, degrades the amyloid-β peptide
-
Yamin R, Bagchi S, Hildebrant R, Scaloni A, Widom RL, et al. (2007) Acyl peptide hydrolase, a serine proteinase isolated from conditioned medium of neuroblastoma cells, degrades the amyloid-β peptide. J Neurochem 100: 458-467.
-
(2007)
J Neurochem
, vol.100
, pp. 458-467
-
-
Yamin, R.1
Bagchi, S.2
Hildebrant, R.3
Scaloni, A.4
Widom, R.L.5
-
19
-
-
80053263292
-
Conjugated linoleic acid protects against gliadin-induced depletion of intestinal defenses
-
Bergamo P, Gogliettino M, Palmieri G, Cocca E, Maurano F, et al. (2011) Conjugated linoleic acid protects against gliadin-induced depletion of intestinal defenses. Mol Nutr Food Res 55: S248-S256.
-
(2011)
Mol Nutr Food Res
, vol.55
-
-
Bergamo, P.1
Gogliettino, M.2
Palmieri, G.3
Cocca, E.4
Maurano, F.5
-
20
-
-
80053912078
-
Acylpeptide hydrolase inhibition as targeted strategy to induce proteasomal down-regulation
-
Palmieri G, Bergamo P, Luini A, Ruvo M, Gogliettino M, et al. (2011) Acylpeptide hydrolase inhibition as targeted strategy to induce proteasomal down-regulation. PLoS ONE 6 (10): e25888.
-
(2011)
PLoS ONE
, vol.6
, Issue.10
-
-
Palmieri, G.1
Bergamo, P.2
Luini, A.3
Ruvo, M.4
Gogliettino, M.5
-
21
-
-
4143096860
-
Crystal Structure of an Acylpeptide Hydrolase/Esterase from Aeropyrum pernix K1
-
Bartlam M, Wang G, Yang H, Gao R, Zhao X, et al. (2004) Crystal Structure of an Acylpeptide Hydrolase/Esterase from Aeropyrum pernix K1. Structure 12: 1481-1488.
-
(2004)
Structure
, vol.12
, pp. 1481-1488
-
-
Bartlam, M.1
Wang, G.2
Yang, H.3
Gao, R.4
Zhao, X.5
-
22
-
-
0032563162
-
Prolyl Oligopeptidase: An Unusual β-Propeller Domain Regulates Proteolysis
-
Fülöp V, Böcskei Z, Polgár L, (1998) Prolyl Oligopeptidase: An Unusual β-Propeller Domain Regulates Proteolysis. Cell 94: 161-170.
-
(1998)
Cell
, vol.94
, pp. 161-170
-
-
Fülöp, V.1
Böcskei, Z.2
Polgár, L.3
-
23
-
-
78751533121
-
Structure and Catalysis of Acylaminoacyl Peptidase: Closed and Open Subunits of a Dimer Oligopeptidase
-
Harmat V, Domokos K, Menyhard DK, Pallo A, Szeltner Z, et al. (2011) Structure and Catalysis of Acylaminoacyl Peptidase: Closed and Open Subunits of a Dimer Oligopeptidase. J Biol Chem 286: 1987-1998.
-
(2011)
J Biol Chem
, vol.286
, pp. 1987-1998
-
-
Harmat, V.1
Domokos, K.2
Menyhard, D.K.3
Pallo, A.4
Szeltner, Z.5
-
24
-
-
43049096077
-
Structural and kinetic contributions of the oxyanion binding site to the catalytic activity of acylaminoacyl peptidase
-
Kiss AL, Pallo A, Naray-Szabo G, Harmat V, Polgar L, (2008) Structural and kinetic contributions of the oxyanion binding site to the catalytic activity of acylaminoacyl peptidase. J Struct Biol 162: 312-323.
-
(2008)
J Struct Biol
, vol.162
, pp. 312-323
-
-
Kiss, A.L.1
Pallo, A.2
Naray-Szabo, G.3
Harmat, V.4
Polgar, L.5
-
25
-
-
60849083258
-
First Archaeal PEPB-Serine Protease Inhibitor from Sulfolobus solfataricus with Noncanonical Amino Acid Sequence in the Reactive-Site Loop
-
Palmieri G, Catara G, Saviano M, Langella E, Gogliettino M, et al. (2009) First Archaeal PEPB-Serine Protease Inhibitor from Sulfolobus solfataricus with Noncanonical Amino Acid Sequence in the Reactive-Site Loop. J Proteome Res 8: 327-334.
-
(2009)
J Proteome Res
, vol.8
, pp. 327-334
-
-
Palmieri, G.1
Catara, G.2
Saviano, M.3
Langella, E.4
Gogliettino, M.5
-
26
-
-
0035808362
-
The phosphatidyletanolamine-binding protein is the prototype of a novel family of serine protease inhibitors
-
Hengst U, Albrecht H, Hess D, Monard D, (2001) The phosphatidyletanolamine-binding protein is the prototype of a novel family of serine protease inhibitors. J Biol Chem 276: 535-540.
-
(2001)
J Biol Chem
, vol.276
, pp. 535-540
-
-
Hengst, U.1
Albrecht, H.2
Hess, D.3
Monard, D.4
-
27
-
-
1642464622
-
Evolutionary families of peptidase inhibitors
-
Rawlings ND, Tolle DP, Barrett AJ, (2004) Evolutionary families of peptidase inhibitors. Biochem J 378: 705-716.
-
(2004)
Biochem J
, vol.378
, pp. 705-716
-
-
Rawlings, N.D.1
Tolle, D.P.2
Barrett, A.J.3
-
28
-
-
52649134528
-
Effect of Chaotropic Agents on the Structure-Function of Recombinant Acylpeptide Hydrolase
-
Senthilkumar R, Krishna Sharma K, (2002) Effect of Chaotropic Agents on the Structure-Function of Recombinant Acylpeptide Hydrolase. J Prot Chem 21: 323-332.
-
(2002)
J Prot Chem
, vol.21
, pp. 323-332
-
-
Senthilkumar, R.1
Krishna Sharma, K.2
-
29
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29 (9): e45.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.9
-
-
Pfaffl, M.W.1
-
30
-
-
0035876166
-
Molecular markers of serine protease evolution
-
Krem MM, Di Cera E, (2001) Molecular markers of serine protease evolution. EMBO J 20: 3036-3045.
-
(2001)
EMBO J
, vol.20
, pp. 3036-3045
-
-
Krem, M.M.1
Di Cera, E.2
-
31
-
-
0023767035
-
The molecular evolution of genes and proteins: a tale of two serines
-
Brenner S, (1988) The molecular evolution of genes and proteins: a tale of two serines. Nature 334: 528-530.
-
(1988)
Nature
, vol.334
, pp. 528-530
-
-
Brenner, S.1
-
32
-
-
0029067426
-
Differential Codon Usage for Conserved Amino Acids: Evidence that the Serine Codons TCN were Primordial
-
Diaz-Lazcoz Y, Henaut A, Vigier Ph, Risler JL, (1995) Differential Codon Usage for Conserved Amino Acids: Evidence that the Serine Codons TCN were Primordial. J Mol Biol 250: 123-127.
-
(1995)
J Mol Biol
, vol.250
, pp. 123-127
-
-
Diaz-Lazcoz, Y.1
Henaut, A.2
Vigier, P.3
Risler, J.L.4
-
33
-
-
0015275944
-
Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature
-
Brock TD, Brock KM, Belly RT, Weiss RL, (1972) Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature. Arch Microbiol 84: 54-68.
-
(1972)
Arch Microbiol
, vol.84
, pp. 54-68
-
-
Brock, T.D.1
Brock, K.M.2
Belly, R.T.3
Weiss, R.L.4
-
34
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK, (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
35
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM, (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
36
-
-
0029927505
-
Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels
-
Shevchenko A, Wilm M, Vorm O, Mann M, (1996) Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal Chem 68: 850-858.
-
(1996)
Anal Chem
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
37
-
-
77953967480
-
A Highly Selective Oligopeptide Binding Protein from the Archaeon Sulfolobus solfataricus
-
Gogliettino M, Balestrieri M, Pocsfalvi G, Fiume I, Natale L, et al. (2010) A Highly Selective Oligopeptide Binding Protein from the Archaeon Sulfolobus solfataricus. J Bac 192: 3123-3131.
-
(2010)
J Bac
, vol.192
, pp. 3123-3131
-
-
Gogliettino, M.1
Balestrieri, M.2
Pocsfalvi, G.3
Fiume, I.4
Natale, L.5
-
38
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
39
-
-
0031574072
-
The Clustal_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The Clustal_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4867-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4867-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
40
-
-
48249102000
-
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
-
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, et al. (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36: Web Server issue W465-W469.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Dereeper, A.1
Guignon, V.2
Blanc, G.3
Audic, S.4
Buffet, S.5
-
41
-
-
76749119387
-
BLAST-EXPLORER helps you building datasets for phylogenetic analysis
-
Dereeper A, Audic S, Claverie JM, Blanc G, (2010) BLAST-EXPLORER helps you building datasets for phylogenetic analysis. BMC Evol Biol 10: 8.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 8
-
-
Dereeper, A.1
Audic, S.2
Claverie, J.M.3
Blanc, G.4
-
42
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 (5): 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
43
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
Talavera G, Castresana J, (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56: 564-577.
-
(2007)
Syst Biol
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
44
-
-
77950806408
-
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Syst Biol 59 (3): 307-321.
-
(2010)
Syst Biol
, vol.59
, Issue.3
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
45
-
-
33750314083
-
TreeDyn: towards dynamic graphics and annotations for analyses of trees
-
Chevenet F, Brun C, Bañuls AL, Jacq B, Christen R, (2006) TreeDyn: towards dynamic graphics and annotations for analyses of trees. BMC Bioinformatics 7: 439-447.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 439-447
-
-
Chevenet, F.1
Brun, C.2
Bañuls, A.L.3
Jacq, B.4
Christen, R.5
-
46
-
-
33745256005
-
Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative
-
Anisimova M, Gascuel O, (2006) Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative. Syst Biol 55 (4): 539-552.
-
(2006)
Syst Biol
, vol.55
, Issue.4
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
47
-
-
33745826249
-
Discrimination of Esterase and Peptidase Activities of Acylaminoacyl Peptidase from Hyperthermophilic Aeropyrum pernix K1 by a Single Mutation
-
Wang Q, Yang G, Liu Y, Feng Y, (2006) Discrimination of Esterase and Peptidase Activities of Acylaminoacyl Peptidase from Hyperthermophilic Aeropyrum pernix K1 by a Single Mutation. J Biol Chem 281: 18618-18625.
-
(2006)
J Biol Chem
, vol.281
, pp. 18618-18625
-
-
Wang, Q.1
Yang, G.2
Liu, Y.3
Feng, Y.4
|