-
1
-
-
0012252471
-
Systematic determination of patterns of gene expression during Drosophila embryogenesis
-
Tomancak P, Beaton A, Weiszmann R, Kwan E, Shu S, Lewis SE, Richards S, Ashburner M, Hartenstein V, Celniker SE, Rubin GM. Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biology 2002, 3(12):0088.1-0088.14.
-
(2002)
Genome Biology
, vol.3
, Issue.12
-
-
Tomancak, P.1
Beaton, A.2
Weiszmann, R.3
Kwan, E.4
Shu, S.5
Lewis, S.E.6
Richards, S.7
Ashburner, M.8
Hartenstein, V.9
Celniker, S.E.10
Rubin, G.M.11
-
2
-
-
38349127974
-
Global analysis of patterns of gene expression during Drosophila embryogenesis
-
10.1186/gb-2007-8-7-r145, 2323238, 17645804
-
Tomancak P, Berman B, Beaton A, Weiszmann R, Kwan E, Hartenstein V, Celniker S, Rubin G. Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biology 2007, 8(7):R145. 10.1186/gb-2007-8-7-r145, 2323238, 17645804.
-
(2007)
Genome Biology
, vol.8
, Issue.7
-
-
Tomancak, P.1
Berman, B.2
Beaton, A.3
Weiszmann, R.4
Kwan, E.5
Hartenstein, V.6
Celniker, S.7
Rubin, G.8
-
3
-
-
33644873681
-
FlyBase: anatomical data, images and queries
-
10.1093/nar/gkj068, 1347431, 16381917, The FlyBase Consortium
-
Grumbling G, Strelets V, . The FlyBase Consortium FlyBase: anatomical data, images and queries. Nucleic Acids Research 2006, 34:D484-D488. 10.1093/nar/gkj068, 1347431, 16381917, The FlyBase Consortium.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Grumbling, G.1
Strelets, V.2
-
4
-
-
41949085885
-
A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
-
10.1016/j.cell.2008.01.053, 18423206
-
Fowlkes CC, Luengo Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm. Cell 2008, 133(2):364-374. 10.1016/j.cell.2008.01.053, 18423206.
-
(2008)
Cell
, vol.133
, Issue.2
, pp. 364-374
-
-
Fowlkes, C.C.1
Luengo Hendriks, C.L.2
Keränen, S.V.3
Weber, G.H.4
Rübel, O.5
Huang, M.Y.6
Chatoor, S.7
DePace, A.H.8
Simirenko, L.9
Henriquez, C.10
Beaton, A.11
Weiszmann, R.12
Celniker, S.13
Hamann, B.14
Knowles, D.W.15
Biggin, M.D.16
Eisen, M.B.17
Malik, J.18
-
5
-
-
34848918150
-
Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function
-
10.1016/j.cell.2007.08.003, 17923096
-
Lécuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Cerovina T, Hughes TR, Tomancak P, Krause HM. Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function. Cell 2007, 131:174-187. 10.1016/j.cell.2007.08.003, 17923096.
-
(2007)
Cell
, vol.131
, pp. 174-187
-
-
Lécuyer, E.1
Yoshida, H.2
Parthasarathy, N.3
Alm, C.4
Babak, T.5
Cerovina, T.6
Hughes, T.R.7
Tomancak, P.8
Krause, H.M.9
-
6
-
-
34547586344
-
Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster
-
10.1371/journal.pcbi.0030144, 1924873, 17658945
-
Samsonova AA, Niranjan M, Russell S, Brazma A. Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster. PLoS Comput Biol 2007, 3(7):e144. [http://dx.plos.org/10.1371], 10.1371/journal.pcbi.0030144, 1924873, 17658945.
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.7
-
-
Samsonova, A.A.1
Niranjan, M.2
Russell, S.3
Brazma, A.4
-
7
-
-
34247392710
-
Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution, I: data acquisition pipeline
-
10.1186/gb-2006-7-12-r123, 1794436, 17184546
-
Luengo Hendriks C, Keranen S, Fowlkes C, Simirenko L, Weber G, DePace A, Henriquez C, Kaszuba D, Hamann B, Eisen M, Malik J, Sudar D, Biggin M, Knowles D. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution, I: data acquisition pipeline. Genome Biology 2006, 7(12):R123. 10.1186/gb-2006-7-12-r123, 1794436, 17184546.
-
(2006)
Genome Biology
, vol.7
, Issue.12
-
-
Luengo Hendriks, C.1
Keranen, S.2
Fowlkes, C.3
Simirenko, L.4
Weber, G.5
DePace, A.6
Henriquez, C.7
Kaszuba, D.8
Hamann, B.9
Eisen, M.10
Malik, J.11
Sudar, D.12
Biggin, M.13
Knowles, D.14
-
8
-
-
34247208442
-
Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution, II: dynamics
-
10.1186/gb-2006-7-12-r124, 1794437, 17184547
-
Keranen S, Fowlkes C, Luengo, Hendriks C, Sudar D, Knowles D, Malik J, Biggin M. Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution, II: dynamics. Genome Biology 2006, 7(12):R124. 10.1186/gb-2006-7-12-r124, 1794437, 17184547.
-
(2006)
Genome Biology
, vol.7
, Issue.12
-
-
Keranen, S.1
Fowlkes, C.2
Luengo Hendriks, C.3
Sudar, D.4
Knowles, D.5
Malik, J.6
Biggin, M.7
-
9
-
-
67549148344
-
Visual Exploration of Three-dimensional Gene Expression Using Physical Views and Linked Abstract Views
-
Weber GH, Rubel O, Huang MY, DePace AH, Fowlkes CC, Keranen SVE, Luengo Hendriks CL, Hagen H, Knowles DW, Malik J, Biggin MD, Hamann B. Visual Exploration of Three-dimensional Gene Expression Using Physical Views and Linked Abstract Views. IEEE/ACM Transactions on Computational Biology and Bioinformatics 2008, 99:296-309.
-
(2008)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.99
, pp. 296-309
-
-
Weber, G.H.1
Rubel, O.2
Huang, M.Y.3
DePace, A.H.4
Fowlkes, C.C.5
Keranen, S.V.E.6
Luengo Hendriks, C.L.7
Hagen, H.8
Knowles, D.W.9
Malik, J.10
Biggin, M.D.11
Hamann, B.12
-
10
-
-
76149094177
-
Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape
-
2824522, 20087342
-
Frise E, Hammonds AS, Celniker SE. Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape. Molecular Systems Biology 2010, 6:345. 2824522, 20087342.
-
(2010)
Molecular Systems Biology
, vol.6
, pp. 345
-
-
Frise, E.1
Hammonds, A.S.2
Celniker, S.E.3
-
11
-
-
77951940746
-
Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images
-
10.1093/bioinformatics/btp658, 3140183, 19942587
-
Mace DL, Varnado N, Zhang W, Frise E, Ohler U. Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images. Bioinformatics 2010, 26(6):761-769. 10.1093/bioinformatics/btp658, 3140183, 19942587.
-
(2010)
Bioinformatics
, vol.26
, Issue.6
, pp. 761-769
-
-
Mace, D.L.1
Varnado, N.2
Zhang, W.3
Frise, E.4
Ohler, U.5
-
12
-
-
77954196783
-
SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images
-
10.1093/bioinformatics/btq172, 2881357, 20529936
-
Puniyani K, Faloutsos C, Xing EP. SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images. Bioinformatics 2010, 26(12):i47-i56. [http://bioinformatics.oxfordjournals.org/content/26/12/i47.abstract], 10.1093/bioinformatics/btq172, 2881357, 20529936.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
-
-
Puniyani, K.1
Faloutsos, C.2
Xing, E.P.3
-
13
-
-
12244265472
-
BEST: A Novel Computational Approach for Comparing Gene Expression Patterns From Early Stages of Drosophila melanogaster Development
-
1462359, 12524369
-
Kumar S, Jayaraman K, Panchanathan S, Gurunathan R, Marti-Subirana A, Newfeld SJ. BEST: A Novel Computational Approach for Comparing Gene Expression Patterns From Early Stages of Drosophila melanogaster Development. Genetics 2002, 162(4):2037-2047. [http://www.genetics.org/cgi/content/abstract/162/4/2037], 1462359, 12524369.
-
(2002)
Genetics
, vol.162
, Issue.4
, pp. 2037-2047
-
-
Kumar, S.1
Jayaraman, K.2
Panchanathan, S.3
Gurunathan, R.4
Marti-Subirana, A.5
Newfeld, S.J.6
-
14
-
-
13244268372
-
Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations
-
373529, 15040819
-
Gurunathan R, Emden BV, Panchanathan S, Kumar S. Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant moment digital representations. BMC Bioinformatics 2004, 5(202):13. 373529, 15040819.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.202
, pp. 13
-
-
Gurunathan, R.1
Emden, B.V.2
Panchanathan, S.3
Kumar, S.4
-
15
-
-
82255181421
-
FlyExpress: Visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis
-
10.1093/bioinformatics/btr567, 21994220
-
Kumar S, Konikoff C, Van Emden B, Busick C, Davis KT, Ji S, Wu L-W, Ramos H, Brody T, Panchanathan S, Ye J, Karr TL, Gerold K, McCutchan M, Newfeld SJ. FlyExpress: Visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. Bioinformatics 2011, 27(23):3319-3320. [http://www.flyexpress.net/], 10.1093/bioinformatics/btr567, 21994220.
-
(2011)
Bioinformatics
, vol.27
, Issue.23
, pp. 3319-3320
-
-
Kumar, S.1
Konikoff, C.2
Van Emden, B.3
Busick, C.4
Davis, K.T.5
Ji, S.6
Wu, L.-W.7
Ramos, H.8
Brody, T.9
Panchanathan, S.10
Ye, J.11
Karr, T.L.12
Gerold, K.13
McCutchan, M.14
Newfeld, S.J.15
-
16
-
-
50549093271
-
Automated annotation of Drosophila gene expression patterns using a controlled vocabulary
-
10.1093/bioinformatics/btn347, 2519157, 18632750
-
Ji S, Sun L, Jin R, Kumar S, Ye J. Automated annotation of Drosophila gene expression patterns using a controlled vocabulary. Bioinformatics 2008, 24(17):1881-1888. 10.1093/bioinformatics/btn347, 2519157, 18632750.
-
(2008)
Bioinformatics
, vol.24
, Issue.17
, pp. 1881-1888
-
-
Ji, S.1
Sun, L.2
Jin, R.3
Kumar, S.4
Ye, J.5
-
17
-
-
58549108763
-
Mapping the gene expression universe
-
10.1016/j.gde.2008.08.003, 22913211
-
Lécuyer E, Tomancak P. Mapping the gene expression universe. Current Opinion in Genetics & Development 2008, 18(6):506-512. 10.1016/j.gde.2008.08.003, 22913211.
-
(2008)
Current Opinion in Genetics & Development
, vol.18
, Issue.6
, pp. 506-512
-
-
Lécuyer, E.1
Tomancak, P.2
-
18
-
-
42149163917
-
Developmental stage annotation of Drosophila gene expression pattern images via an entire solution path for LDA
-
Ye J, Chen J, Janardan R, Kumar S. Developmental stage annotation of Drosophila gene expression pattern images via an entire solution path for LDA. ACM Transactions Knowledge Discovery from Data 2008, 2:1-21.
-
(2008)
ACM Transactions Knowledge Discovery from Data
, vol.2
, pp. 1-21
-
-
Ye, J.1
Chen, J.2
Janardan, R.3
Kumar, S.4
-
19
-
-
65549129744
-
A Bag-of-Words Approach for Drosophila Gene Expression Pattern Annotation
-
10.1186/1471-2105-10-119, 2680406, 19383139
-
Ji S, Li YX, Zhou ZH, Kumar S, Ye J. A Bag-of-Words Approach for Drosophila Gene Expression Pattern Annotation. BMC Bioinformatics 2009, 10:119. 10.1186/1471-2105-10-119, 2680406, 19383139.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 119
-
-
Ji, S.1
Li, Y.X.2
Zhou, Z.H.3
Kumar, S.4
Ye, J.5
-
20
-
-
70350677092
-
Drosophila Gene Expression Pattern Annotation Using Sparse Features and Term-term Interactions
-
Ji S, Yuan L, Li YX, Zhou ZH, Kumar S, Ye J. Drosophila Gene Expression Pattern Annotation Using Sparse Features and Term-term Interactions. Proceedings of the Fifteenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining 2009, 407-416.
-
(2009)
Proceedings of the Fifteenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining
, pp. 407-416
-
-
Ji, S.1
Yuan, L.2
Li, Y.X.3
Zhou, Z.H.4
Kumar, S.5
Ye, J.6
-
21
-
-
77953193733
-
Drosophila Gene Expression Pattern Annotation through Multi-instance Multi-label Learning
-
Li YX, Ji S, Kumar S, Ye J, Zhou ZH. Drosophila Gene Expression Pattern Annotation through Multi-instance Multi-label Learning. Proceedings of the Twenty-First International Joint Conference on Artificial Intelligence 2009, 1445-1450.
-
(2009)
Proceedings of the Twenty-First International Joint Conference on Artificial Intelligence
, pp. 1445-1450
-
-
Li, Y.X.1
Ji, S.2
Kumar, S.3
Ye, J.4
Zhou, Z.H.5
-
22
-
-
70350627315
-
Multi-label Multiple Kernel Learning
-
Koller D, Schuurmans D, Bengio Y, Bottou L
-
Ji S, Sun L, Jin R, Ye J. Multi-label Multiple Kernel Learning. Advances in Neural Information Processing Systems 21 2009, 777-784. Koller D, Schuurmans D, Bengio Y, Bottou L.
-
(2009)
Advances in Neural Information Processing Systems 21
, pp. 777-784
-
-
Ji, S.1
Sun, L.2
Jin, R.3
Ye, J.4
-
25
-
-
79952313379
-
Understanding bag-of-words model: a statistical framework
-
[10.1007/s13042-010-0001-0]
-
Zhang Y, Jin R, Zhou ZH. Understanding bag-of-words model: a statistical framework. International Journal of Machine Learning and Cybernetics 2010, 1:43-52. [10.1007/s13042-010-0001-0][http://dx.doi.org/10.1007/s13042-010-0001-0].
-
(2010)
International Journal of Machine Learning and Cybernetics
, vol.1
, pp. 43-52
-
-
Zhang, Y.1
Jin, R.2
Zhou, Z.H.3
-
26
-
-
3042535216
-
Distinctive Image Features from Scale-Invariant Keypoints
-
Lowe DG. Distinctive Image Features from Scale-Invariant Keypoints. Int J Comput Vision 2004, 60(2):91-110.
-
(2004)
Int J Comput Vision
, vol.60
, Issue.2
, pp. 91-110
-
-
Lowe, D.G.1
-
28
-
-
33845572523
-
Beyond Bags of Features: Spatial Pyramid Matching for Recognizing Natural Scene Categories
-
USA: IEEE Computer Society, Washington, D C
-
Lazebnik S, Schmid C, Ponce J. Beyond Bags of Features: Spatial Pyramid Matching for Recognizing Natural Scene Categories. Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2006, 2169-2178. USA: IEEE Computer Society, Washington, D C.
-
(2006)
Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition
, pp. 2169-2178
-
-
Lazebnik, S.1
Schmid, C.2
Ponce, J.3
-
32
-
-
34047120829
-
Automatic recognition and annotation of gene expression patterns of fly embryos
-
10.1093/bioinformatics/btl680, 17237064
-
Zhou J, Peng H. Automatic recognition and annotation of gene expression patterns of fly embryos. Bioinformatics 2007, 23(5):589-596. 10.1093/bioinformatics/btl680, 17237064.
-
(2007)
Bioinformatics
, vol.23
, Issue.5
, pp. 589-596
-
-
Zhou, J.1
Peng, H.2
|