메뉴 건너뛰기




Volumn 24, Issue 17, 2008, Pages 1881-1888

Automated annotation of Drosophila gene expression patterns using a controlled vocabulary

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CORRELATION ANALYSIS; DATA EXTRACTION; DROSOPHILA MELANOGASTER; GENE EXPRESSION REGULATION; IMAGE ANALYSIS; IN SITU HYBRIDIZATION; INFORMATION PROCESSING; INFORMATION RETRIEVAL; KERNEL METHOD; MATHEMATICAL COMPUTING; NOMENCLATURE; NONHUMAN; PRIORITY JOURNAL;

EID: 50549093271     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn347     Document Type: Article
Times cited : (35)

References (41)
  • 2
    • 0037183901 scopus 로고    scopus 로고
    • Gene expression during the life cycle of Drosophilae Melanogaster
    • Arbeitman,M.N. et al. (2002) Gene expression during the life cycle of Drosophilae Melanogaster. Science, 297, 2270-2275.
    • (2002) Science , vol.297 , pp. 2270-2275
    • Arbeitman, M.N.1
  • 4
    • 55449133888 scopus 로고    scopus 로고
    • Carson, J. et al. (2005) A digital atlas to characterize the mouse brain transcriptome. PLoS Computat. Biol, 1, e4l.
    • Carson, J. et al. (2005) A digital atlas to characterize the mouse brain transcriptome. PLoS Computat. Biol, 1, e4l.
  • 6
    • 43249093335 scopus 로고    scopus 로고
    • Image retrieval: Ideas, influences, and trends of the new age
    • ACM Press, New York, NY, USA, pp
    • Datta,R. et al. (2008) Image retrieval: Ideas, influences, and trends of the new age. ACM Computing Surveys. Vol. 40, ACM Press, New York, NY, USA, pp. 1-60.
    • (2008) ACM Computing Surveys , vol.40 , pp. 1-60
    • Datta, R.1
  • 7
    • 34547840255 scopus 로고    scopus 로고
    • Kernel based data fusion for gene prioritization
    • De Bie,T. et al. (2007) Kernel based data fusion for gene prioritization. Bioinformatics,23, i125-i132.
    • (2007) Bioinformatics , vol.23
    • De Bie, T.1
  • 8
    • 33645784376 scopus 로고    scopus 로고
    • An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes
    • Estrada,B. et al. (2006) An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes. PLoS Genet., 2, 160-171.
    • (2006) PLoS Genet , vol.2 , pp. 160-171
    • Estrada, B.1
  • 10
    • 33745855044 scopus 로고    scopus 로고
    • The pyramid match kernel: Discriminative classification with sets of image features
    • IEEE Computer Society, Washington, DC, USA, pp
    • Graumn,K. and Darrell,T. (2005) The pyramid match kernel: Discriminative classification with sets of image features. In Proceedings of the Tenth IEEE Intemational Conference on Computer Vision. IEEE Computer Society, Washington, DC, USA, pp. 1458-1465.
    • (2005) Proceedings of the Tenth IEEE Intemational Conference on Computer Vision , pp. 1458-1465
    • Graumn, K.1    Darrell, T.2
  • 11
    • 84864069671 scopus 로고    scopus 로고
    • Approximate correspondences in high dimensions
    • Schölkopf,B. et al, eds, MIT Press, Cambridge, MA, pp
    • Grauman,K and Darrell,T. (2007a) Approximate correspondences in high dimensions. In Schölkopf,B. et al. (eds) Advances in Neural Information Processing Systems. MIT Press, Cambridge, MA, pp. 505-512.
    • (2007) Advances in Neural Information Processing Systems , pp. 505-512
    • Grauman, K.1    Darrell, T.2
  • 12
    • 34247576789 scopus 로고    scopus 로고
    • The pyramid match kernel: Efficient learning with sets of features
    • Grauman,K and Darrell,T. (2007b) The pyramid match kernel: Efficient learning with sets of features. J. Mack Learn. Res., 8, 725-760.
    • (2007) J. Mack Learn. Res , vol.8 , pp. 725-760
    • Grauman, K.1    Darrell, T.2
  • 13
    • 33644873681 scopus 로고    scopus 로고
    • FlyBase: Anatomical data, images and queries
    • Grumbling,G et al. (2006) FlyBase: Anatomical data, images and queries. Nucleic Acids Res., 34, D484-D488.
    • (2006) Nucleic Acids Res , vol.34
    • Grumbling, G.1
  • 14
    • 13244268372 scopus 로고    scopus 로고
    • Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: Binary feature versus invariant moment digital representations
    • Guranathan,R. et al. (2004) Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: Binary feature versus invariant moment digital representations. BMC Bioinformatics, 5, 13.
    • (2004) BMC Bioinformatics , vol.5 , pp. 13
    • Guranathan, R.1
  • 15
    • 10044285992 scopus 로고    scopus 로고
    • Canonical correlation analysis: An overview with application to learning methods
    • Hardoon,D.R. et al. (2004) Canonical correlation analysis: An overview with application to learning methods. Neural Comput., 16, 2639-2664.
    • (2004) Neural Comput , vol.16 , pp. 2639-2664
    • Hardoon, D.R.1
  • 17
    • 0027657329 scopus 로고
    • Semi-infinite programming: Theory, methods, and applications
    • Hettich,R. and Kortanek,K.O. (1993) Semi-infinite programming: Theory, methods, and applications. SIAM Rev., 35, 380-429.
    • (1993) SIAM Rev , vol.35 , pp. 380-429
    • Hettich, R.1    Kortanek, K.O.2
  • 19
    • 12244265472 scopus 로고    scopus 로고
    • BEST: A novel computational approach for comparing gene expression patterns from early stages of Drosophlia melanogaster
    • Kumar,S. et al. (2002) BEST: A novel computational approach for comparing gene expression patterns from early stages of Drosophlia melanogaster developmental Genetics, 169, 2037-2047.
    • (2002) developmental Genetics , vol.169 , pp. 2037-2047
    • Kumar, S.1
  • 20
    • 8844278523 scopus 로고    scopus 로고
    • Learning the kernel matrix with semidefinite programming
    • Lanckriet,G.R.G. et al. (2004a) Learning the kernel matrix with semidefinite programming. J. Mach. Learn. Res., 5, 27-72.
    • (2004) J. Mach. Learn. Res , vol.5 , pp. 27-72
    • Lanckriet, G.R.G.1
  • 21
    • 8844263749 scopus 로고    scopus 로고
    • A statistical framework for genomic data fusion
    • Lanckriet,G.R.G. et al. (2004b) A statistical framework for genomic data fusion. Bioinformatics., 20, 2626-2635.
    • (2004) Bioinformatics , vol.20 , pp. 2626-2635
    • Lanckriet, G.R.G.1
  • 22
    • 33845572523 scopus 로고    scopus 로고
    • Beyond bags of features: Spatial pyramid matching for recognizing natural scene categories
    • IEEE Computer Society, Washington, DC, USA, pp
    • Lazebnik,S. et al. (2006) Beyond bags of features: Spatial pyramid matching for recognizing natural scene categories. In Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition. IEEE Computer Society, Washington, DC, USA, pp. 2169-2178.
    • (2006) Proceedings of the 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition , pp. 2169-2178
    • Lazebnik, S.1
  • 23
    • 34848918150 scopus 로고    scopus 로고
    • Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
    • Lécuyer,E. et al. (2007) Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell, 131, 174-187.
    • (2007) Cell , vol.131 , pp. 174-187
    • Lécuyer, E.1
  • 24
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the-adult mouse brain
    • Lein,E.S. et al. (2006) Genome-wide atlas of gene expression in the-adult mouse brain. Nature, 445, 168-176.
    • (2006) Nature , vol.445 , pp. 168-176
    • Lein, E.S.1
  • 25
    • 27644547620 scopus 로고    scopus 로고
    • Mikotajczyk,K. and Schmid,C. Q0,05 A performance evaluation of local descriptors. IEEE Trans. Pattern Anal. Mach. Intell., 27, 1615-1630.
    • Mikotajczyk,K. and Schmid,C. Q0,05) A performance evaluation of local descriptors. IEEE Trans. Pattern Anal. Mach. Intell., 27, 1615-1630.
  • 26
    • 33244468369 scopus 로고    scopus 로고
    • A comparison of affine region detectors
    • Mikotajczyk,K. et al. (2005) A comparison of affine region detectors. Int. J. Comput. Vis., 65, 43-72.
    • (2005) Int. J. Comput. Vis , vol.65 , pp. 43-72
    • Mikotajczyk, K.1
  • 28
    • 34547586344 scopus 로고    scopus 로고
    • Prediction of gene expression in embryonic structures of Drosophila melanogaster
    • Samsonova,A.A. et al. (2007) Prediction of gene expression in embryonic structures of Drosophila melanogaster. PLoS Comput. Biol. 3, 1360-1372.
    • (2007) PLoS Comput. Biol , vol.3 , pp. 1360-1372
    • Samsonova, A.A.1
  • 31
    • 33745776113 scopus 로고    scopus 로고
    • Large scale multiple kernel learning
    • Sonnenburg,S. et al. (2006) Large scale multiple kernel learning. J. Mach. Learn. Res., 7, 1531-1565.
    • (2006) J. Mach. Learn. Res , vol.7 , pp. 1531-1565
    • Sonnenburg, S.1
  • 32
    • 0012252471 scopus 로고    scopus 로고
    • Systematic determination of patterns of gene expression during Drosophila embryogenesis
    • Tomancak,P. et al. (2002) Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biol. 3.
    • (2002) Genome Biol , vol.3
    • Tomancak, P.1
  • 33
    • 38349127974 scopus 로고    scopus 로고
    • Global analysis of patterns of gene expression during Drosophila embryogenesis
    • Tomancak,P. et al. (2007) Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biol., 8, R145.
    • (2007) Genome Biol , vol.8
    • Tomancak, P.1
  • 34
    • 50549088128 scopus 로고    scopus 로고
    • Van Emden,B. et al. (2006) FlyExpress: An image-matching web-tool for finding genes with overlapping patterns of expression in Drosophila embryos. Available at http://www.flyexpress.net/ (last accessed date 30 April 2008).
    • Van Emden,B. et al. (2006) FlyExpress: An image-matching web-tool for finding genes with overlapping patterns of expression in Drosophila embryos. Available at http://www.flyexpress.net/ (last accessed date 30 April 2008).
  • 36
    • 34250833265 scopus 로고    scopus 로고
    • Classification of Drosophila embryonic developmental stage range based on gene expression pattern images
    • Ye,J. et al. (2006) Classification of Drosophila embryonic developmental stage range based on gene expression pattern images. In Proceedings of the Computational Systems Bioinformatics Conference. pp. 293-298.
    • (2006) Proceedings of the Computational Systems Bioinformatics Conference , pp. 293-298
    • Ye, J.1
  • 37
    • 33846580425 scopus 로고    scopus 로고
    • Local features and kernels for classification of texture and object categories: A comprehensive study
    • Zhang,J. et al. (2007) Local features and kernels for classification of texture and object categories: A comprehensive study. Int. J. Comput. Vis., 73, 213-238.
    • (2007) Int. J. Comput. Vis , vol.73 , pp. 213-238
    • Zhang, J.1
  • 38
    • 84864027458 scopus 로고    scopus 로고
    • Learning with hypergraphs: Clustering, classification, and embedding
    • Schölkopf,B. et al, eds, MIT Press, Cambridge, MA, pp
    • Zhou,D. et al. (2007) Learning with hypergraphs: Clustering, classification, and embedding. In Schölkopf,B. et al. (eds) Advances in Neural Information Processing systems. MIT Press, Cambridge, MA, pp. 1601-1608.
    • (2007) Advances in Neural Information Processing systems , pp. 1601-1608
    • Zhou, D.1
  • 39
    • 34047120829 scopus 로고    scopus 로고
    • Automatic recognition and annotation of gene expression patterns of fly embryos
    • Zhou,J. and Peng,H. (2007) Automatic recognition and annotation of gene expression patterns of fly embryos. Bioinformatics, 23, 589-596.
    • (2007) Bioinformatics , vol.23 , pp. 589-596
    • Zhou, J.1    Peng, H.2
  • 40
    • 84864028262 scopus 로고    scopus 로고
    • Multi-instance multi-label learning with application to scene classification
    • Schölkopf,B. et al, eds, MIT Press, Cambridge, MA, pp
    • Zhou,Z.H. and Zhang,M.L. (2007) Multi-instance multi-label learning with application to scene classification. In Schölkopf,B. et al. (eds) Advances in Neural Information Processing Systems. MIT Press, Cambridge, MA, pp. 1609-1616.
    • (2007) Advances in Neural Information Processing Systems , pp. 1609-1616
    • Zhou, Z.H.1    Zhang, M.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.