-
1
-
-
34249697574
-
Approaches for extracting practical information from gene co-expression networks in plant biology
-
Aoki, K., Ogata, Y., and, Shibata, D., (2007) Approaches for extracting practical information from gene co-expression networks in plant biology. Plant Cell Physiol. 48, 381-390.
-
(2007)
Plant Cell Physiol.
, vol.48
, pp. 381-390
-
-
Aoki, K.1
Ogata, Y.2
Shibata, D.3
-
2
-
-
0031104721
-
A glucocorticoid-mediated transcriptional induction system in transgenic plants
-
Aoyama, T., and, Chua, N.H., (1997) A glucocorticoid-mediated transcriptional induction system in transgenic plants. Plant J. 11, 605-612.
-
(1997)
Plant J.
, vol.11
, pp. 605-612
-
-
Aoyama, T.1
Chua, N.H.2
-
3
-
-
0041346457
-
Continuous representations of time-series gene expression data
-
Bar-Joseph, Z., Gerber, G.K., Gifford, D.K., Jaakkola, T.S., and, Simon, I., (2003) Continuous representations of time-series gene expression data. J. Comput. Biol. 10, 341-356.
-
(2003)
J. Comput. Biol.
, vol.10
, pp. 341-356
-
-
Bar-Joseph, Z.1
Gerber, G.K.2
Gifford, D.K.3
Jaakkola, T.S.4
Simon, I.5
-
4
-
-
0038050537
-
Genetic manipulation of glycine decarboxylation
-
Bauwe, H., and, Kolukisaoglu, U., (2003) Genetic manipulation of glycine decarboxylation. J. Exp. Bot. 54, 1523-1535.
-
(2003)
J. Exp. Bot.
, vol.54
, pp. 1523-1535
-
-
Bauwe, H.1
Kolukisaoglu, U.2
-
5
-
-
0347447343
-
A gene expression map of the Arabidopsis root
-
Birnbaum, K., Shasha, D.E., Wang, J.Y., Jung, J.W., Lambert, G.M., Galbraith, D.W., and, Benfey, P.N., (2003) A gene expression map of the Arabidopsis root. Science 302, 1956-1960.
-
(2003)
Science
, vol.302
, pp. 1956-1960
-
-
Birnbaum, K.1
Shasha, D.E.2
Wang, J.Y.3
Jung, J.W.4
Lambert, G.M.5
Galbraith, D.W.6
Benfey, P.N.7
-
6
-
-
33644816031
-
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis
-
Blasing, O.E., Gibon, Y., Gunther, M., Hohne, M., Morcuende, R., Osuna, D., Thimm, O., Usadel, B., Scheible, W.R., and, Stitt, M., (2005) Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis. Plant Cell 17, 3257-3281.
-
(2005)
Plant Cell
, vol.17
, pp. 3257-3281
-
-
Blasing, O.E.1
Gibon, Y.2
Gunther, M.3
Hohne, M.4
Morcuende, R.5
Osuna, D.6
Thimm, O.7
Usadel, B.8
Scheible, W.R.9
Stitt, M.10
-
7
-
-
79955626693
-
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation
-
Breeze, E., Harrison, E., McHattie, S., et al. (2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 23, 873-894.
-
(2011)
Plant Cell
, vol.23
, pp. 873-894
-
-
Breeze, E.1
Harrison, E.2
McHattie, S.3
-
8
-
-
0034710924
-
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
-
Butte, A.J., Tamayo, P., Slonim, D., Golub, T.R., and, Kohane, I.S., (2000) Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks. Proc. Natl Acad. Sci. USA, 97, 12182-12186.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 12182-12186
-
-
Butte, A.J.1
Tamayo, P.2
Slonim, D.3
Golub, T.R.4
Kohane, I.S.5
-
9
-
-
80052272064
-
High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions
-
Caldana, C., Degenkolbe, T., Cuadros-Inostroza, A., Klie, S., Sulpice, R., Leisse, A., Steinhauser, D., Fernie, A.R., Willmitzer, L., and, Hannah, M.A., (2011) High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. Plant J. 67, 869-884.
-
(2011)
Plant J.
, vol.67
, pp. 869-884
-
-
Caldana, C.1
Degenkolbe, T.2
Cuadros-Inostroza, A.3
Klie, S.4
Sulpice, R.5
Leisse, A.6
Steinhauser, D.7
Fernie, A.R.8
Willmitzer, L.9
Hannah, M.A.10
-
10
-
-
27744520437
-
Regulation of gene expression by light
-
Casal, J.J., and, Yanovsky, M.J., (2005) Regulation of gene expression by light. Int. J. Dev. Biol. 49, 501-511.
-
(2005)
Int. J. Dev. Biol.
, vol.49
, pp. 501-511
-
-
Casal, J.J.1
Yanovsky, M.J.2
-
11
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and, Bent, A.F., (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
12
-
-
0032612220
-
Linear modeling of mRNA expression levels during CNS development and injury
-
D'Haeseleer, P., Wen, X., Fuhrman, S., and, Somogyi, R., (1999) Linear modeling of mRNA expression levels during CNS development and injury. Pac. Symp. Biocomput. 4, 41-52.
-
(1999)
Pac. Symp. Biocomput.
, vol.4
, pp. 41-52
-
-
D'Haeseleer, P.1
Wen, X.2
Fuhrman, S.3
Somogyi, R.4
-
13
-
-
78649592081
-
Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis
-
Espinoza, C., Degenkolbe, T., Caldana, C., Zuther, E., Leisse, A., Willmitzer, L., Hincha, D.K., and, Hannah, M.A., (2010) Interaction with diurnal and circadian regulation results in dynamic metabolic and transcriptional changes during cold acclimation in Arabidopsis. PLoS One 5, e14101.
-
(2010)
PLoS One
, vol.5
-
-
Espinoza, C.1
Degenkolbe, T.2
Caldana, C.3
Zuther, E.4
Leisse, A.5
Willmitzer, L.6
Hincha, D.K.7
Hannah, M.A.8
-
14
-
-
4944227719
-
Adjustment of diurnal starch turnover to short days: Depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period
-
Gibon, Y., Blasing, O.E., Palacios-Rojas, N., Pankovic, D., Hendriks, J.H., Fisahn, J., Hohne, M., Gunther, M., and, Stitt, M., (2004) Adjustment of diurnal starch turnover to short days: depletion of sugar during the night leads to a temporary inhibition of carbohydrate utilization, accumulation of sugars and post-translational activation of ADP-glucose pyrophosphorylase in the following light period. Plant J. 39, 847-862.
-
(2004)
Plant J.
, vol.39
, pp. 847-862
-
-
Gibon, Y.1
Blasing, O.E.2
Palacios-Rojas, N.3
Pankovic, D.4
Hendriks, J.H.5
Fisahn, J.6
Hohne, M.7
Gunther, M.8
Stitt, M.9
-
15
-
-
0034088162
-
Expression of a bacterial serine acetyltransferase in transgenic potato plants leads to increased levels of cysteine and glutathione
-
Harms, K., von Ballmoos, P., Brunold, C., Hofgen, R., and, Hesse, H., (2000) Expression of a bacterial serine acetyltransferase in transgenic potato plants leads to increased levels of cysteine and glutathione. Plant J. 22, 335-343.
-
(2000)
Plant J.
, vol.22
, pp. 335-343
-
-
Harms, K.1
Von Ballmoos, P.2
Brunold, C.3
Hofgen, R.4
Hesse, H.5
-
16
-
-
33645027511
-
Managing sulphur metabolism in plants
-
Hawkesford, M.J., and, De Kok, L.J., (2006) Managing sulphur metabolism in plants. Plant Cell Environ. 29, 382-395.
-
(2006)
Plant Cell Environ.
, vol.29
, pp. 382-395
-
-
Hawkesford, M.J.1
De Kok, L.J.2
-
17
-
-
0038574304
-
Effect of glucose on assimilatory sulphate reduction in Arabidopsis thaliana roots
-
Hesse, H., Trachsel, N., Suter, M., Kopriva, S., von Ballmoos, P., Rennenberg, H., and, Brunold, C., (2003) Effect of glucose on assimilatory sulphate reduction in Arabidopsis thaliana roots. J. Exp. Bot. 54, 1701-1709.
-
(2003)
J. Exp. Bot.
, vol.54
, pp. 1701-1709
-
-
Hesse, H.1
Trachsel, N.2
Suter, M.3
Kopriva, S.4
Von Ballmoos, P.5
Rennenberg, H.6
Brunold, C.7
-
18
-
-
0344177200
-
Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-1-serine as a general regulator of gene expression in response to sulfur nutrition
-
Hirai, M.Y., Fujiwara, T., Awazuhara, M., Kimura, T., Noji, M., and, Saito, K., (2003) Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-1-serine as a general regulator of gene expression in response to sulfur nutrition. Plant J. 33, 651-663.
-
(2003)
Plant J.
, vol.33
, pp. 651-663
-
-
Hirai, M.Y.1
Fujiwara, T.2
Awazuhara, M.3
Kimura, T.4
Noji, M.5
Saito, K.6
-
19
-
-
21844472259
-
Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics
-
Hirai, M.Y., Klein, M., Fujikawa, Y., et al. (2005) Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics. J. Biol. Chem. 280, 25590-25595.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 25590-25595
-
-
Hirai, M.Y.1
Klein, M.2
Fujikawa, Y.3
-
20
-
-
38149062772
-
Metabolomics integrated with transcriptomics: Assessing systems response to sulfur-deficiency stress
-
Hoefgen, R., and, Nikiforova, V.J., (2008) Metabolomics integrated with transcriptomics: assessing systems response to sulfur-deficiency stress. Physiol. Plant. 132, 190-198.
-
(2008)
Physiol. Plant.
, vol.132
, pp. 190-198
-
-
Hoefgen, R.1
Nikiforova, V.J.2
-
21
-
-
26844490845
-
O-acetylserine and the regulation of expression of genes encoding components for sulfate uptake and assimilation in potato
-
Hopkins, L., Parmar, S., Blaszczyk, A., Hesse, H., Hoefgen, R., and, Hawkesford, M.J., (2005) O-acetylserine and the regulation of expression of genes encoding components for sulfate uptake and assimilation in potato. Plant Physiol. 138, 433-440.
-
(2005)
Plant Physiol.
, vol.138
, pp. 433-440
-
-
Hopkins, L.1
Parmar, S.2
Blaszczyk, A.3
Hesse, H.4
Hoefgen, R.5
Hawkesford, M.J.6
-
22
-
-
0037339765
-
The serine acetyltransferase gene family in Arabidopsis thaliana and the regulation of its expression by cadmium
-
Howarth, J.R., Dominguez-Solis, J.R., Gutierrez-Alcala, G., Wray, J.L., Romero, L.C., and, Gotor, C., (2003) The serine acetyltransferase gene family in Arabidopsis thaliana and the regulation of its expression by cadmium. Plant Mol. Biol. 51, 589-598.
-
(2003)
Plant Mol. Biol.
, vol.51
, pp. 589-598
-
-
Howarth, J.R.1
Dominguez-Solis, J.R.2
Gutierrez-Alcala, G.3
Wray, J.L.4
Romero, L.C.5
Gotor, C.6
-
23
-
-
46849119542
-
A highly specific sulfate-deficiency induced gene (sdi1) from wheat
-
(Saito, K. De Kok, L.J. Stulen, I. Hawkesford, M.J. Schnug, E. Sirko, A. and Rennenberg, H. eds). Leiden, The Netherlands: Backhuys Publishers
-
Howarth, J.R., Barraclough, P.B., and, Hawkesford, M.J., (2005) A highly specific sulfate-deficiency induced gene (sdi1) from wheat. In Sulfur Transport and Assimilation in Plants in the Post Genomic Era (, Saito, K., De Kok, L.J., Stulen, I., Hawkesford, M.J., Schnug, E., Sirko, A., and, Rennenberg, H., eds). Leiden, The Netherlands: Backhuys Publishers, pp. 161-164.
-
(2005)
Sulfur Transport and Assimilation in Plants in the Post Genomic Era
, pp. 161-164
-
-
Howarth, J.R.1
Barraclough, P.B.2
Hawkesford, M.J.3
-
24
-
-
58149377648
-
A sulphur deficiency-induced gene, sdi1, involved in the utilization of stored sulphate pools under sulphur-limiting conditions has potential as a diagnostic indicator of sulphur nutritional status
-
Howarth, J.R., Parmar, S., Barraclough, P.B., and, Hawkesford, M.J., (2009) A sulphur deficiency-induced gene, sdi1, involved in the utilization of stored sulphate pools under sulphur-limiting conditions has potential as a diagnostic indicator of sulphur nutritional status. Plant Biotechnol. J. 7, 200-209.
-
(2009)
Plant Biotechnol. J.
, vol.7
, pp. 200-209
-
-
Howarth, J.R.1
Parmar, S.2
Barraclough, P.B.3
Hawkesford, M.J.4
-
25
-
-
77954203144
-
Multivariate multi-way analysis of multi-source data
-
Huopaniemi, I., Suvitaival, T., Nikkila, J., Oresic, M., and, Kaski, S., (2010) Multivariate multi-way analysis of multi-source data. Bioinformatics 26, 391-398.
-
(2010)
Bioinformatics
, vol.26
, pp. 391-398
-
-
Huopaniemi, I.1
Suvitaival, T.2
Nikkila, J.3
Oresic, M.4
Kaski, S.5
-
26
-
-
33644527950
-
The model organism as a system: Integrating 'omics' data sets
-
Joyce, A.R., and, Palsson, B.O., (2006) The model organism as a system: integrating 'omics' data sets. Nat. Rev. 7, 198-210.
-
(2006)
Nat. Rev.
, vol.7
, pp. 198-210
-
-
Joyce, A.R.1
Palsson, B.O.2
-
27
-
-
33745659674
-
Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism
-
Kolbe, A., Oliver, S.N., Fernie, A.R., Stitt, M., van Dongen, J.T., and, Geigenberger, P., (2006) Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiol. 141, 412-422.
-
(2006)
Plant Physiol.
, vol.141
, pp. 412-422
-
-
Kolbe, A.1
Oliver, S.N.2
Fernie, A.R.3
Stitt, M.4
Van Dongen, J.T.5
Geigenberger, P.6
-
28
-
-
4344587717
-
Control of sulphate assimilation and glutathione synthesis: Interaction with N and C metabolism
-
Kopriva, S., and, Rennenberg, H., (2004) Control of sulphate assimilation and glutathione synthesis: interaction with N and C metabolism. J. Exp. Bot. 55, 1831-1842.
-
(2004)
J. Exp. Bot.
, vol.55
, pp. 1831-1842
-
-
Kopriva, S.1
Rennenberg, H.2
-
29
-
-
0033213118
-
Light regulation of assimilatory sulphate reduction in Arabidopsis thaliana
-
Kopriva, S., Muheim, R., Koprivova, A., Trachsel, N., Catalano, C., Suter, M., and, Brunold, C., (1999) Light regulation of assimilatory sulphate reduction in Arabidopsis thaliana. Plant J. 20, 37-44.
-
(1999)
Plant J.
, vol.20
, pp. 37-44
-
-
Kopriva, S.1
Muheim, R.2
Koprivova, A.3
Trachsel, N.4
Catalano, C.5
Suter, M.6
Brunold, C.7
-
30
-
-
0036851199
-
Interaction of sulfate assimilation with carbon and nitrogen metabolism in Lemna minor
-
Kopriva, S., Suter, M., von Ballmoos, P., Hesse, H., Krahenbuhl, U., Rennenberg, H., and, Brunold, C., (2002) Interaction of sulfate assimilation with carbon and nitrogen metabolism in Lemna minor. Plant Physiol. 130, 1406-1413.
-
(2002)
Plant Physiol.
, vol.130
, pp. 1406-1413
-
-
Kopriva, S.1
Suter, M.2
Von Ballmoos, P.3
Hesse, H.4
Krahenbuhl, U.5
Rennenberg, H.6
Brunold, C.7
-
31
-
-
0033759245
-
Regulation of sulfate assimilation by nitrogen in Arabidopsis
-
Koprivova, A., Suter, M., den Camp, R.O., Brunold, C., and, Kopriva, S., (2000) Regulation of sulfate assimilation by nitrogen in Arabidopsis. Plant Physiol. 122, 737-746.
-
(2000)
Plant Physiol.
, vol.122
, pp. 737-746
-
-
Koprivova, A.1
Suter, M.2
Den Camp, R.O.3
Brunold, C.4
Kopriva, S.5
-
32
-
-
61649114728
-
Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis
-
Krueger, S., Niehl, A., Lopez Martin, M.C., Steinhauser, D., Donath, A., Hildebrandt, T., Romero, L.C., Hoefgen, R., Gotor, C., and, Hesse, H., (2009) Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell Environ. 32, 349-367.
-
(2009)
Plant Cell Environ.
, vol.32
, pp. 349-367
-
-
Krueger, S.1
Niehl, A.2
Lopez Martin, M.C.3
Steinhauser, D.4
Donath, A.5
Hildebrandt, T.6
Romero, L.C.7
Hoefgen, R.8
Gotor, C.9
Hesse, H.10
-
33
-
-
11844277863
-
Conditional and partial correlation
-
Lawrance, A.J., (1976) Conditional and partial correlation. Am. Stat. 30, 146-149.
-
(1976)
Am. Stat.
, vol.30
, pp. 146-149
-
-
Lawrance, A.J.1
-
34
-
-
70350692995
-
The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts, metabolites, and flux
-
Lehmann, M., Schwarzlander, M., Obata, T., et al. (2009) The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts, metabolites, and flux. Mol. Plant, 2, 390-406.
-
(2009)
Mol. Plant
, vol.2
, pp. 390-406
-
-
Lehmann, M.1
Schwarzlander, M.2
Obata, T.3
-
35
-
-
77950255670
-
A contribution to identification of novel regulators of plant response to sulfur deficiency: Characteristics of a tobacco gene UP9C, its protein product and the effects of UP9C silencing
-
Lewandowska, M., Wawrzynska, A., Moniuszko, G., et al. (2010) A contribution to identification of novel regulators of plant response to sulfur deficiency: characteristics of a tobacco gene UP9C, its protein product and the effects of UP9C silencing. Mol. Plant, 3, 347-360.
-
(2010)
Mol. Plant
, vol.3
, pp. 347-360
-
-
Lewandowska, M.1
Wawrzynska, A.2
Moniuszko, G.3
-
36
-
-
34248580879
-
Gas chromatography mass spectrometry-based metabolite profiling in plants
-
Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., and, Fernie, A.R., (2006) Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat. Protoc. 1, 387-396.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 387-396
-
-
Lisec, J.1
Schauer, N.2
Kopka, J.3
Willmitzer, L.4
Fernie, A.R.5
-
37
-
-
77953215305
-
Robin: An intuitive wizard application for R-based expression microarray quality assessment and analysis
-
Lohse, M., Nunes-Nesi, A., Kruger, P., et al. (2010) Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis. Plant Physiol. 153, 642-651.
-
(2010)
Plant Physiol.
, vol.153
, pp. 642-651
-
-
Lohse, M.1
Nunes-Nesi, A.2
Kruger, P.3
-
38
-
-
0028329937
-
Characterization of the CysB protein of Klebsiella aerogenes: Direct evidence that N-acetylserine rather than O-acetylserine serves as the inducer of the cysteine regulon
-
Lynch, A.S., Tyrrell, R., Smerdon, S.J., Briggs, G.S., and, Wilkinson, A.J., (1994) Characterization of the CysB protein of Klebsiella aerogenes: direct evidence that N-acetylserine rather than O-acetylserine serves as the inducer of the cysteine regulon. Biochem. J. 299, 129-136.
-
(1994)
Biochem. J.
, vol.299
, pp. 129-136
-
-
Lynch, A.S.1
Tyrrell, R.2
Smerdon, S.J.3
Briggs, G.S.4
Wilkinson, A.J.5
-
39
-
-
57749103865
-
The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators
-
Malitsky, S., Blum, E., Less, H., Venger, I., Elbaz, M., Morin, S., Eshed, Y., and, Aharoni, A., (2008) The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators. Plant Physiol. 148, 2021-2049.
-
(2008)
Plant Physiol.
, vol.148
, pp. 2021-2049
-
-
Malitsky, S.1
Blum, E.2
Less, H.3
Venger, I.4
Elbaz, M.5
Morin, S.6
Eshed, Y.7
Aharoni, A.8
-
40
-
-
0037783227
-
Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways
-
Maruyama-Nakashita, A., Inoue, E., Watanabe-Takahashi, A., Yamaya, T., and, Takahashi, H., (2003) Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways. Plant Physiol. 132, 597-605.
-
(2003)
Plant Physiol.
, vol.132
, pp. 597-605
-
-
Maruyama-Nakashita, A.1
Inoue, E.2
Watanabe-Takahashi, A.3
Yamaya, T.4
Takahashi, H.5
-
41
-
-
4344592879
-
Regulation of high-affinity sulphate transporters in plants: Towards systematic analysis of sulphur signalling and regulation
-
Maruyama-Nakashita, A., Nakamura, Y., Yamaya, T., and, Takahashi, H., (2004) Regulation of high-affinity sulphate transporters in plants: towards systematic analysis of sulphur signalling and regulation. J. Exp. Bot. 55, 1843-1849.
-
(2004)
J. Exp. Bot.
, vol.55
, pp. 1843-1849
-
-
Maruyama-Nakashita, A.1
Nakamura, Y.2
Yamaya, T.3
Takahashi, H.4
-
42
-
-
33845765675
-
Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism
-
Maruyama-Nakashita, A., Nakamura, Y., Tohge, T., Saito, K., and, Takahashi, H., (2006) Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism. Plant Cell 18, 3235-3251.
-
(2006)
Plant Cell
, vol.18
, pp. 3235-3251
-
-
Maruyama-Nakashita, A.1
Nakamura, Y.2
Tohge, T.3
Saito, K.4
Takahashi, H.5
-
43
-
-
48449091196
-
GeneCAT - Novel webtools that combine BLAST and co-expression analyses
-
Mutwil, M., Obro, J., Willats, W.G., and, Persson, S., (2008) GeneCAT-novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Res. 36, W320-W326.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Mutwil, M.1
Obro, J.2
Willats, W.G.3
Persson, S.4
-
44
-
-
73249138596
-
Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm
-
Mutwil, M., Usadel, B., Schutte, M., Loraine, A., Ebenhoh, O., and, Persson, S., (2010) Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Plant Physiol. 152, 29-43.
-
(2010)
Plant Physiol.
, vol.152
, pp. 29-43
-
-
Mutwil, M.1
Usadel, B.2
Schutte, M.3
Loraine, A.4
Ebenhoh, O.5
Persson, S.6
-
45
-
-
79955581503
-
PlaNet: Combined sequence and expression comparisons across plant networks derived from seven species
-
Mutwil, M., Klie, S., Tohge, T., Giorgi, F.M., Wilkins, O., Campbell, M.M., Fernie, A.R., Usadel, B., Nikoloski, Z., and, Persson, S., (2011) PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. Plant Cell 23, 895-910.
-
(2011)
Plant Cell
, vol.23
, pp. 895-910
-
-
Mutwil, M.1
Klie, S.2
Tohge, T.3
Giorgi, F.M.4
Wilkins, O.5
Campbell, M.M.6
Fernie, A.R.7
Usadel, B.8
Nikoloski, Z.9
Persson, S.10
-
46
-
-
0001552684
-
Regulation of sulfate assimilation by light and O-acetyl-1-serine in Lemna minor L
-
Neuenschwander, U., Suter, M., and, Brunold, C., (1991) Regulation of sulfate assimilation by light and O-acetyl-1-serine in Lemna minor L. Plant Physiol. 97, 253-258.
-
(1991)
Plant Physiol.
, vol.97
, pp. 253-258
-
-
Neuenschwander, U.1
Suter, M.2
Brunold, C.3
-
47
-
-
0037296141
-
Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: Interlacing of biosynthetic pathways provides response specificity
-
Nikiforova, V., Freitag, J., Kempa, S., Adamik, M., Hesse, H., and, Hoefgen, R., (2003) Transcriptome analysis of sulfur depletion in Arabidopsis thaliana: interlacing of biosynthetic pathways provides response specificity. Plant J. 33, 633-650.
-
(2003)
Plant J.
, vol.33
, pp. 633-650
-
-
Nikiforova, V.1
Freitag, J.2
Kempa, S.3
Adamik, M.4
Hesse, H.5
Hoefgen, R.6
-
48
-
-
33846061087
-
ATTED-II: A database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
-
Obayashi, T., Kinoshita, K., Nakai, K., Shibaoka, M., Hayashi, S., Saeki, M., Shibata, D., Saito, K., and, Ohta, H., (2007) ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res. 35, D863-D869.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Obayashi, T.1
Kinoshita, K.2
Nakai, K.3
Shibaoka, M.4
Hayashi, S.5
Saeki, M.6
Shibata, D.7
Saito, K.8
Ohta, H.9
-
49
-
-
58149197587
-
ATTED-II provides coexpressed gene networks for Arabidopsis
-
Obayashi, T., Hayashi, S., Saeki, M., Ohta, H., and, Kinoshita, K., (2009) ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. 37, D987-D991.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Obayashi, T.1
Hayashi, S.2
Saeki, M.3
Ohta, H.4
Kinoshita, K.5
-
50
-
-
0025189841
-
In vitro interactions of CysB protein with the cysJIH promoter of Salmonella typhimurium: Inhibitory effects of sulfide
-
Ostrowski, J., and, Kredich, N.M., (1990) In vitro interactions of CysB protein with the cysJIH promoter of Salmonella typhimurium: inhibitory effects of sulfide. J. Bacteriol. 172, 779-785.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 779-785
-
-
Ostrowski, J.1
Kredich, N.M.2
-
51
-
-
0025753361
-
Negative autoregulation of cysB in Salmonella typhimurium: In vitro interactions of CysB protein with the cysB promoter
-
Ostrowski, J., and, Kredich, N.M., (1991) Negative autoregulation of cysB in Salmonella typhimurium: in vitro interactions of CysB protein with the cysB promoter. J. Bacteriol. 173, 2212-2218.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 2212-2218
-
-
Ostrowski, J.1
Kredich, N.M.2
-
52
-
-
35848934561
-
2-induced cell death
-
2-induced cell death. Plant J. 52, 640-657.
-
(2007)
Plant J.
, vol.52
, pp. 640-657
-
-
Queval, G.1
Issakidis-Bourguet, E.2
Hoeberichts, F.A.3
Vandorpe, M.4
Gakiere, B.5
Vanacker, H.6
Miginiac-Maslow, M.7
Van Breusegem, F.8
Noctor, G.9
-
53
-
-
65249115377
-
2-activated up-regulation of glutathione in Arabidopsis involves induction of genes encoding enzymes involved in cysteine synthesis in the chloroplast
-
2-activated up-regulation of glutathione in Arabidopsis involves induction of genes encoding enzymes involved in cysteine synthesis in the chloroplast. Mol. Plant 2, 344-356.
-
(2009)
Mol. Plant
, vol.2
, pp. 344-356
-
-
Queval, G.1
Thominet, D.2
Vanacker, H.3
Miginiac-Maslow, M.4
Gakiere, B.5
Noctor, G.6
-
54
-
-
48549090275
-
Differential regulation of the expression of two high-affinity sulfate transporters, SULTR1.1 and SULTR1.2, in Arabidopsis
-
Rouached, H., Wirtz, M., Alary, R., Hell, R., Arpat, A.B., Davidian, J.C., Fourcroy, P., and, Berthomieu, P., (2008) Differential regulation of the expression of two high-affinity sulfate transporters, SULTR1.1 and SULTR1.2, in Arabidopsis. Plant Physiol. 147, 897-911.
-
(2008)
Plant Physiol.
, vol.147
, pp. 897-911
-
-
Rouached, H.1
Wirtz, M.2
Alary, R.3
Hell, R.4
Arpat, A.B.5
Davidian, J.C.6
Fourcroy, P.7
Berthomieu, P.8
-
55
-
-
37849020436
-
Decoding genes with coexpression networks and metabolomics -'majority report by precogs'
-
Saito, K., Hirai, M.Y., and, Yonekura-Sakakibara, K., (2008) Decoding genes with coexpression networks and metabolomics -'majority report by precogs'. Trends Plant Sci. 13, 36-43.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 36-43
-
-
Saito, K.1
Hirai, M.Y.2
Yonekura-Sakakibara, K.3
-
56
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
Sanger, F., Nicklen, S., and, Coulson, A.R., (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl Acad. Sci. USA, 74, 5463-5467.
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
57
-
-
0030949331
-
Accumulation of nitrate in the shoot acts as a signal to regulate shoot-root allocation in tobacco
-
Scheible, W.R., Lauerer, M., Schulze, E.D., Caboche, M., and, Stitt, M., (1997) Accumulation of nitrate in the shoot acts as a signal to regulate shoot-root allocation in tobacco. Plant J. 11, 671-691.
-
(1997)
Plant J.
, vol.11
, pp. 671-691
-
-
Scheible, W.R.1
Lauerer, M.2
Schulze, E.D.3
Caboche, M.4
Stitt, M.5
-
58
-
-
16544392329
-
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen
-
Scheible, W.R., Morcuende, R., Czechowski, T., Fritz, C., Osuna, D., Palacios-Rojas, N., Schindelasch, D., Thimm, O., Udvardi, M.K., and, Stitt, M., (2004) Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol. 136, 2483-2499.
-
(2004)
Plant Physiol.
, vol.136
, pp. 2483-2499
-
-
Scheible, W.R.1
Morcuende, R.2
Czechowski, T.3
Fritz, C.4
Osuna, D.5
Palacios-Rojas, N.6
Schindelasch, D.7
Thimm, O.8
Udvardi, M.K.9
Stitt, M.10
-
59
-
-
0030885523
-
Regulation of sulfur assimilation in higher plants: A sulfate transporter induced in sulfate-starved roots plays a central role in Arabidopsis thaliana
-
Takahashi, H., Yamazaki, M., Sasakura, N., Watanabe, A., Leustek, T., Engler, J.A., Engler, G., Van Montagu, M., and, Saito, K., (1997) Regulation of sulfur assimilation in higher plants: a sulfate transporter induced in sulfate-starved roots plays a central role in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 94, 11102-11107.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 11102-11107
-
-
Takahashi, H.1
Yamazaki, M.2
Sasakura, N.3
Watanabe, A.4
Leustek, T.5
Engler, J.A.6
Engler, G.7
Van Montagu, M.8
Saito, K.9
-
60
-
-
0036954558
-
Sulfate reduction is increased in transgenic Arabidopsis thaliana expressing 5'-adenylylsulfate reductase from Pseudomonas aeruginosa
-
Tsakraklides, G., Martin, M., Chalam, R., Tarczynski, M.C., Schmidt, A., and, Leustek, T., (2002) Sulfate reduction is increased in transgenic Arabidopsis thaliana expressing 5'-adenylylsulfate reductase from Pseudomonas aeruginosa. Plant J. 32, 879-889.
-
(2002)
Plant J.
, vol.32
, pp. 879-889
-
-
Tsakraklides, G.1
Martin, M.2
Chalam, R.3
Tarczynski, M.C.4
Schmidt, A.5
Leustek, T.6
-
61
-
-
0036742028
-
Flux control of sulphate assimilation in Arabidopsis thaliana: Adenosine 5'-phosphosulphate reductase is more susceptible than ATP sulphurylase to negative control by thiols
-
Vauclare, P., Kopriva, S., Fell, D., Suter, M., Sticher, L., von Ballmoos, P., Krahenbuhl, U., den Camp, R.O., and, Brunold, C., (2002) Flux control of sulphate assimilation in Arabidopsis thaliana: adenosine 5'-phosphosulphate reductase is more susceptible than ATP sulphurylase to negative control by thiols. Plant J. 31, 729-740.
-
(2002)
Plant J.
, vol.31
, pp. 729-740
-
-
Vauclare, P.1
Kopriva, S.2
Fell, D.3
Suter, M.4
Sticher, L.5
Von Ballmoos, P.6
Krahenbuhl, U.7
Den Camp, R.O.8
Brunold, C.9
-
62
-
-
76549128732
-
Nicotiana tabacum EIL2 directly regulates expression of at least one tobacco gene induced by sulphur starvation
-
Wawrzynska, A., Lewandowska, M., and, Sirko, A., (2010) Nicotiana tabacum EIL2 directly regulates expression of at least one tobacco gene induced by sulphur starvation. J. Exp. Bot. 61, 889-900.
-
(2010)
J. Exp. Bot.
, vol.61
, pp. 889-900
-
-
Wawrzynska, A.1
Lewandowska, M.2
Sirko, A.3
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