Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways

Plant Physiology

Volumn 132, Issue 2, 2003, Pages 597-605

  Maruyama Nakashita, Akiko ^a   Inoue, Eri ^a   Watanabe Takahashi, Akiko ^a   Yamaya, Tomoyuki ^a,b   Takahashi, Hideki ^a  

^a RIKEN Plant Science Center   (Japan)

^b TOHOKU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; GENES; METABOLITES; SULFUR;

MACRONUTRIENTS;

PLANTS (BOTANY);

ARABIDOPSIS; EMBRYOPHYTA; INSERTION SEQUENCES;

EID: 0037783227     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.102.019802     Document Type: Article

References (35)

1. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815
2. Asada K (1999) The water-water cycle in chloroplasts: scavenging of active oxygen and dissipation of excess photons. Annu Rev Plant Physiol Plant Mol Biol 50: 601-639
3. Benning C (1998) Biosynthesis and function of the sulfolipid sulfoquinovosyl diacylglycerol. Annu Rev Plant Physiol Plant Mol Biol 49: 53-75
4. Bick JA, Setterdahl AT, Knaff DB, Chen Y, Pitcher LH, Zilinskas BA, Leustek T (2001) Regulation of the plant-type 5′-adenylyl sulfate reductase by oxidative stress. Biochemistry 40: 9040-9048
5. Creelman RA, Mullet JE (1997) Biosynthesis and action of jasmonates in plants. Annu Rev Plant Physiol Plant Mol Biol 48: 355-381
6. Grossman A, Takahashi H (2001) Macronutrient utilization by photosynthetic eukaryotes and the fabric of interactions. Annu Rev Plant Physiol Plant Mol Biol 52: 163-210
7. Gustavsson N, Kokke BP, Harndahl U, Silow M, Bechtold U, Poghosyan Z, Murphy D, Boelens WC, Sundby C (2002) A peptide methionine sulfoxide reductase highly expressed in photosynthetic tissue in Arabidopsis thaliana can protect the chaperone-like activity, of a chloroplast-localized small heat shock protein. Plant J 29: 545-553
8. Gutierrez-Marcos JF, Roberts MA, Campbell EI, Wray JL (1996) Three members of a novel small gene-family from Arabidopsis thaliana able to complement functionally an Escherichia coli mutant defective in PAPS reductase activity, encode proteins with a thioredoxin-like domain and "APS reductase" activity. Proc Natl Acad Sci USA 93: 13377-13382
9. Hanfrey C, Sommer S, Mayer MJ, Burtin D, Michael AJ (2001) Arabidopsis polyamine biosynthesis: absence of ornithine decarboxylase and the mechanism of arginine decarboxylase activity. Plant J 27: 551-560
10. Inaba K, Fujiwara T, Hayashi H, Chino M, Komeda Y, Naito S (1994) Isolation of an Arabidopsis thaliana mutant, mto1, that overaccumulates soluble methionine: temporal and spatial patterns of soluble methionine accumulation. Plant Physiol 104: 881-887
11. Krysan PJ, Young JC, Sussman MR (1999) T-DNA as an insertional mutagen in Arabidopsis. Plant Cell 11: 2283-2290
12. Kutz A, Muller A, Hennig P, Kaiser WM, Piotrowski M, Weiler EW (2002) A role for nitrilase 3 in the regulation of root morphology in sulphur-starving Arabidopsis thaliana. Plant J 30: 95-106
13. Leustek T, Martin MN, Bick J, Davies JP (2000) Pathways and regulation of sulfur metabolism revealed through molecular genetic studies. Annu Rev Plant Physiol Plant Mol Biol 51: 141-166
14. Leustek T, Saito K (1999) Sulfate transport and assimilation in plants. Plant Physiol 120: 637-643
15. Lopukhina A, Dettenberg M, Weiler EW, Hollander-Czytko H (2001) Cloning and characterization of a coronatine-regulated tyrosine amino-transferase from Arabidopsis. Plant Physiol 126: 1678-1687
16. Ludwig SR, Oppenheimer DG, Silflow CD, Snustad DP (1987) Characterization of the α-tubulin gene family of Arabidopsis thaliana. Proc Natl Acad Sci USA 84: 5833-5837
17. Mizote T, Tsuda M, Smith DD, Nakayama H, Nakazawa T (1999) Cloning and characterization of the thiD/J gene of Escherichia coli encoding a thiamin-synthesizing bifunctional enzyme, hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. Microbiology 145: 495-501
18. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15: 473-497
19. Noctor G, Foyer C (1998) Ascorbate and glutathione: keeping active oxygen under control. Annu Rev Plant Physiol Plant Mol Biol 49: 249-279
20. Petrucco S, Bolchi A, Foroni C, Percudani R, Rossi GL, Ottonello S (1996) A maize gene encoding an NADPH binding enzyme highly homologous to isoflavone reductases is activated in response to sulfur starvation. Plant Cell 8: 69-80
21. Richards KD, Gardner RC (1995) pEARLI 1 (accession no. L43080): an Arabidopsis member of a conserved gene family (PGR95-099). Plant Physiol 109: 1497
22. Rouleau M, Marsolais F, Richard M, Nicolle L, Voigt B, Adam G, Varin L (1999) Inactivation of brassinosteroid biological activity by a salicylate-inducible steroid sulfotransferase from Brassica napus. J Biol Chem 274: 20925-20930
23. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning, A Laboratory Manual, Ed 2. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
24. Schauser L, Roussis A, Stiller J, Stougaard J (1999) A plant regulator controlling development of symbiotic root nodules. Nature 402: 191-195
25. Shibagaki N, Rose A, McDermott JP, Fujiwara T, Hayashi H, Yoneyama T, Davies JP (2002) Selenate-resistant mutants of Arabidopsis thaliana identify Sultr1;2, a sulfate transporter required for efficient transport of sulfate into roots. Plant J 29: 475-486
26. Smith FW, Ealing PM, Hawkesford MJ, Clarkson DT (1995) Plant members of a family of sulfate transporters reveal functional subtypes. Proc Natl Acad Sci USA 92: 9373-9377
27. Smith FW, Hawkesford MJ, Ealing PM, Clarkson DT, Vanden Berg PJ, Belcher AR, Warrilow AGS (1997) Regulation of expression of a cDNA from barley roots encoding a high affinity sulfate transporter. Plant J 12: 875-884
28. Takahashi H, Watanabe-Takahashi A, Smith FW, Blake-Kalff M, Hawkesford MJ, Saito K (2000) The role of three functional sulfate transporters involved in uptake and translocation of sulfate in Arabidopsis thaliana. Plant J 23: 171-182
29. Takahashi H, Yamazaki M, Sasakura N, Watanabe A, Leustek T, Engler JA, Engler G, Van Montagu M, Saito K (1997) Regulation of sulfur assimilation in higher plants: a sulfate transporter induced in sulfate-starved roots plays a central role in Arabidopsis thaliana. Proc Natl Acad Sci USA 94: 11102-11107
30. Tiburcio AF, Altabella T, Borrell A, Masgrau C (1997) Polyamine metabolism and its regulation. Physiol Plant 100: 664-674
31. Turner JG, Ellis C, Devoto A (2002) The jasmonate signal pathway. Plant Cell 14: S153-164
32. Valvekens D, Van Montagu M, Van Lijsebettens M (1988) Agrobacterium-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection. Proc Natl Acad Sci USA 85: 5536-5540
33. Varin L, Marsolais F, Richard M, Rouleau M (1997) Sulfation and sulfotransferases: VI. Biochemistry and molecular biology of plant sulfotransferases. FASEB J 11: 517-525
34. Wittstock U, Halkier BA (2002) Glucosinolate research in the Arabidopsis era. Trends Plant Sci 7: 263-270
35. Yoshimoto N, Takahashi H, Smith FW, Yamaya T, Saito K (2002) Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots. Plant J 29: 465-473