-
1
-
-
0032488225
-
Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases
-
Adkins S, Kao C. 1998. Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases. Virology 252:1-8.
-
(1998)
Virology
, vol.252
, pp. 1-8
-
-
Adkins, S.1
Kao, C.2
-
2
-
-
33646826348
-
Parallels among positive-strand RNA viruses, reversetranscribing viruses and double-stranded RNA viruses
-
Ahlquist P. 2006. Parallels among positive-strand RNA viruses, reversetranscribing viruses and double-stranded RNA viruses. Nat. Rev. Microbiol. 4:371-382.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 371-382
-
-
Ahlquist, P.1
-
3
-
-
0033803247
-
Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping
-
Ahola T, den Boon JA, Ahlquist P. 2000. Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J. Virol. 74:8803-8811.
-
(2000)
J. Virol.
, vol.74
, pp. 8803-8811
-
-
Ahola, T.1
den Boon, J.2
Ahlquist, P.3
-
4
-
-
0032710835
-
Putative RNA capping activities encoded by brome mosaic virus: methylation and covalent binding of guanylate by replicase protein 1a
-
Ahola T, Ahlquist P. 1999. Putative RNA capping activities encoded by brome mosaic virus: methylation and covalent binding of guanylate by replicase protein 1a. J. Virol. 73:10061-10069.
-
(1999)
J. Virol.
, vol.73
, pp. 10061-10069
-
-
Ahola, T.1
Ahlquist, P.2
-
5
-
-
77957997708
-
Preference of RIG-I for short viralRNAmolecules in infected cells revealed by next-generation sequencing
-
Baum A, Sachidnaandam R, Garcia-Sastre A. 2010. Preference of RIG-I for short viralRNAmolecules in infected cells revealed by next-generation sequencing. Proc. Natl. Acad. Sci. U. S. A. 107:16303-16308.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 16303-16308
-
-
Baum, A.1
Sachidnaandam, R.2
Garcia-Sastre, A.3
-
6
-
-
75949108066
-
Galaxy: a web-based genome analysis tool for experimentalists
-
Chapter 19:Unit
-
Blankenberg D, et al. 2010. Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol. Chapter 19:Unit 19.10.1-19.10.21.
-
(2010)
Curr. Protoc. Mol. Biol.
-
-
Blankenberg, D.1
-
7
-
-
0034001930
-
Brome mosaic virus polymerase-like protein 2a is directed to the endoplasmic reticulum by helicase-like viral protein 1a
-
Chen J, Ahlquist P. 2000. Brome mosaic virus polymerase-like protein 2a is directed to the endoplasmic reticulum by helicase-like viral protein 1a. J. Virol. 74:4310-4318.
-
(2000)
J. Virol.
, vol.74
, pp. 4310-4318
-
-
Chen, J.1
Ahlquist, P.2
-
8
-
-
0035103905
-
Brome mosaic virus protein 1a recruits viral RNA2 to RNA replication through a 5' proximal RNA2 signal
-
Chen J, Noueiry A, Ahlquist P. 2001. Brome mosaic virus protein 1a recruits viral RNA2 to RNA replication through a 5' proximal RNA2 signal. J. Virol. 75:3207-3219.
-
(2001)
J. Virol.
, vol.75
, pp. 3207-3219
-
-
Chen, J.1
Noueiry, A.2
Ahlquist, P.3
-
9
-
-
0025879354
-
Generation and analysis of nonhomologous RNA-RNA recombinants in brome mosaic virus: sequence complementarities at crossover sites
-
Dzianott AM, Bujarski J. 1991. Generation and analysis of nonhomologous RNA-RNA recombinants in brome mosaic virus: sequence complementarities at crossover sites. J. Virol. 65:4153-4159.
-
(1991)
J. Virol.
, vol.65
, pp. 4153-4159
-
-
Dzianott, A.M.1
Bujarski, J.2
-
10
-
-
80051948564
-
Systematic identification of novel, essential host genes affecting bromovirus RNA replication
-
Gancarz BL, Hao L, He Q, Newton MA, Ahlquist P. 2011. Systematic identification of novel, essential host genes affecting bromovirus RNA replication. PLoS One 6:e23988.
-
(2011)
PLoS One
, vol.6
-
-
Gancarz, B.L.1
Hao, L.2
He, Q.3
Newton, M.A.4
Ahlquist, P.5
-
11
-
-
27644451296
-
Interaction between brome mosaic virus proteins and RNAs: effects on RNA replication, protein expression, and RNA stability
-
Gopinath K, Dragnea B, Kao CC. 2005. Interaction between brome mosaic virus proteins and RNAs: effects on RNA replication, protein expression, and RNA stability. J. Virol. 79:14222-14234.
-
(2005)
J. Virol.
, vol.79
, pp. 14222-14234
-
-
Gopinath, K.1
Dragnea, B.2
Kao, C.C.3
-
12
-
-
0027469808
-
RNA- dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in Saccharomyces cerevisiae
-
Janda M, Ahlquist P. 1993. RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in Saccharomyces cerevisiae. Cell 72:961-970.
-
(1993)
Cell
, vol.72
, pp. 961-970
-
-
Janda, M.1
Ahlquist, P.2
-
13
-
-
0026442838
-
Identification of the domains required for the direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus
-
Kao CC, Ahlquist P. 1992. Identification of the domains required for the direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus. J. Virol. 66:7293-7302.
-
(1992)
J. Virol.
, vol.66
, pp. 7293-7302
-
-
Kao, C.C.1
Ahlquist, P.2
-
14
-
-
0026758359
-
Brome mosaic virus RNA replication protein 1a and 2a form a complex in vitro
-
Kao CC, Quadt R, Hershberger RP, Ahlquist P. 1992. Brome mosaic virus RNA replication protein 1a and 2a form a complex in vitro. J. Virol. 66:6322-6329.
-
(1992)
J. Virol.
, vol.66
, pp. 6322-6329
-
-
Kao, C.C.1
Quadt, R.2
Hershberger, R.P.3
Ahlquist, P.4
-
15
-
-
0035450225
-
De novo initiation of viral RNAdependent RNA synthesis
-
Kao CC, Singh P, Eckert D. 2001. De novo initiation of viral RNAdependent RNA synthesis. Virology 287:251-260.
-
(2001)
Virology
, vol.287
, pp. 251-260
-
-
Kao, C.C.1
Singh, P.2
Eckert, D.3
-
16
-
-
0033587322
-
The N-terminal half of the brome mosaic virus 1a protein has RNA capping-associated activities: specificity for GTP and S-adenosylmethionine.
-
Kong F, Sivakumaran K, Kao CC. 1999. The N-terminal half of the brome mosaic virus 1a protein has RNA capping-associated activities: specificity for GTP and S-adenosylmethionine. Virology 259:200-210.
-
(1999)
Virology
, vol.259
, pp. 200-210
-
-
Kong, F.1
Sivakumaran, K.2
Kao, C.C.3
-
17
-
-
0025251611
-
Analysis of the role of brome mosaic virus la protein domains inRNAreplication, using linker insertion mutagenesis
-
Kroner PA, Young B, Ahlquist P. 1990. Analysis of the role of brome mosaic virus la protein domains inRNAreplication, using linker insertion mutagenesis. J. Virol. 64:6110-6120.
-
(1990)
J. Virol.
, vol.64
, pp. 6110-6120
-
-
Kroner, P.A.1
Young, B.2
Ahlquist, P.3
-
18
-
-
38349115933
-
The TLR3 signaling complex forms by cooperative receptor dimerization
-
Leonard JN, et al. 2008. The TLR3 signaling complex forms by cooperative receptor dimerization. Proc. Natl. Acad. Sci. U. S. A. 105:258-263.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 258-263
-
-
Leonard, J.N.1
-
19
-
-
67651232539
-
Structural basis of double-stranded RNA recognition by the RIG-I-like receptor MDA5
-
Li X, et al. 2009. Structural basis of double-stranded RNA recognition by the RIG-I-like receptor MDA5. Arch. Biochem. Biophys. 488:23-33.
-
(2009)
Arch. Biochem. Biophys.
, vol.488
, pp. 23-33
-
-
Li, X.1
-
20
-
-
42349090335
-
Structural basis of Toll-like receptor 3 signaling with double-stranded RNA.
-
Liu L, et al. 2008. Structural basis of Toll-like receptor 3 signaling with double-stranded RNA. Science 320:379-381.
-
(2008)
Science
, vol.320
, pp. 379-381
-
-
Liu, L.1
-
21
-
-
77955481642
-
The structural basis of 5'-triphosphate double-stranded RNA recognition by RIG-I C-terminal domain
-
Lu C, et al. 2010. The structural basis of 5'-triphosphate double-stranded RNA recognition by RIG-I C-terminal domain. Structure 18:1032-1043.
-
(2010)
Structure
, vol.18
, pp. 1032-1043
-
-
Lu, C.1
-
22
-
-
0033989278
-
De novo initiation of RNA synthesis by the RNAdependent RNA polymerase (NS5B) of hepatitis C virus
-
Luo G, et al. 2000. De novo initiation of RNA synthesis by the RNAdependent RNA polymerase (NS5B) of hepatitis C virus. J. Virol. 74:851-863.
-
(2000)
J. Virol.
, vol.74
, pp. 851-863
-
-
Luo, G.1
-
23
-
-
0025809056
-
Regulation of (+):(-)-strand asymmetry in replication of brome mosaic virus RNA
-
Marsh LE, Huntley CC, Pogue GP, Connell JP, Hall TC. 1991. Regulation of (+):(-)-strand asymmetry in replication of brome mosaic virus RNA. Virology 182:76-83.
-
(1991)
Virology
, vol.182
, pp. 76-83
-
-
Marsh, L.E.1
Huntley, C.C.2
Pogue, G.P.3
Connell, J.P.4
Hall, T.C.5
-
24
-
-
0242406997
-
Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication
-
Noueiry AO, Ahlquist P. 2003. Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication. Annu. Rev. Phytopathol. 41:77-98.
-
(2003)
Annu. Rev. Phytopathol.
, vol.41
, pp. 77-98
-
-
Noueiry, A.O.1
Ahlquist, P.2
-
25
-
-
0028972782
-
Biochemical and genetic analyses of the interaction between the helicase-like and polymerase-like proteins of the brome mosaic virus
-
O'Reilly EK, Tang N, Ahlquist P, Kao CC. 1995. Biochemical and genetic analyses of the interaction between the helicase-like and polymerase-like proteins of the brome mosaic virus. Virology 214:59-71.
-
(1995)
Virology
, vol.214
, pp. 59-71
-
-
O'Reilly, E.K.1
Tang, N.2
Ahlquist, P.3
Kao, C.C.4
-
26
-
-
0030846169
-
Analysis of the interaction of viral RNA replication proteins by using the yeast two-hybrid assay
-
O'Reilly E, Paul J, Kao CC. 1997. Analysis of the interaction of viral RNA replication proteins by using the yeast two-hybrid assay. J. Virol. 71:7526-7532.
-
(1997)
J. Virol.
, vol.71
, pp. 7526-7532
-
-
O'Reilly, E.1
Paul, J.2
Kao, C.C.3
-
27
-
-
0031851751
-
Interaction between the structural domains of the RNA replication proteins of plant-infecting RNA viruses
-
O'Reilly E, Wang Z, French R, Kao CC. 1998. Interaction between the structural domains of the RNA replication proteins of plant-infecting RNA viruses. J. Virol. 72:7160-7169.
-
(1998)
J. Virol.
, vol.72
, pp. 7160-7169
-
-
O'Reilly, E.1
Wang, Z.2
French, R.3
Kao, C.C.4
-
28
-
-
0028999960
-
Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA
-
Quadt R, Ishikawa M, Janda M, Ahlquist P. 1995. Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA. Proc. Natl. Acad. Sci. U. S. A. 92:4892-4896.
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 4892-4896
-
-
Quadt, R.1
Ishikawa, M.2
Janda, M.3
Ahlquist, P.4
-
29
-
-
0036893141
-
Mechanism of de novo initiation by the hepatitis C virus RNA-dependent RNA polymerase: role of divalent metals
-
Ranjith-Kumar CT, et al. 2002. Mechanism of de novo initiation by the hepatitis C virus RNA-dependent RNA polymerase: role of divalent metals. J. Virol. 76:12513-12525.
-
(2002)
J. Virol.
, vol.76
, pp. 12513-12525
-
-
Ranjith-Kumar, C.T.1
-
30
-
-
59449102889
-
Agonists and antagonists recognition by RIG-I, a cytoplasmic innate immunity receptor
-
Ranjith-Kumar CT, et al. 2009. Agonists and antagonists recognition by RIG-I, a cytoplasmic innate immunity receptor. J. Biol. Chem. 284:1155-1165.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 1155-1165
-
-
Ranjith-Kumar, C.T.1
-
31
-
-
79960689739
-
A cell-based assay for RNA synthesis by the HCV polymerase reveals new insights on mechanism of polymerase inhibitors and modulation by NS5A
-
Ranjith-Kumar CT, Wen Y, Baxter N, Bhardwaj K, Kao CC. 2011. A cell-based assay for RNA synthesis by the HCV polymerase reveals new insights on mechanism of polymerase inhibitors and modulation by NS5A. PLoS One 6:e22575.
-
(2011)
PLoS One
, vol.6
-
-
Ranjith-Kumar, C.T.1
Wen, Y.2
Baxter, N.3
Bhardwaj, K.4
Kao, C.C.5
-
32
-
-
33748940970
-
Genome packaging by spherical plant RNA viruses
-
Rao AL. 2006. Genome packaging by spherical plant RNA viruses. Annu. Rev. Phytopathol. 44:61-87.
-
(2006)
Annu. Rev. Phytopathol.
, vol.44
, pp. 61-87
-
-
Rao, A.L.1
-
33
-
-
0029910198
-
Brome mosaic virus helicase and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis
-
Restrepo-Hartwig M, Ahlquist P. 1996. Brome mosaic virus helicase and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis. J. Virol. 70:8908-8916.
-
(1996)
J. Virol.
, vol.70
, pp. 8908-8916
-
-
Restrepo-Hartwig, M.1
Ahlquist, P.2
-
34
-
-
0032708386
-
Brome mosaic virus RNA replication proteins 1a and 2a colocalize and 1a independently localizes on the yeast endoplasmic reticulum
-
Restrepo-Hartwig M, Ahlquist P. 1999. Brome mosaic virus RNA replication proteins 1a and 2a colocalize and 1a independently localizes on the yeast endoplasmic reticulum. J. Virol. 73:10303-10309.
-
(1999)
J. Virol.
, vol.73
, pp. 10303-10309
-
-
Restrepo-Hartwig, M.1
Ahlquist, P.2
-
35
-
-
47949092573
-
Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA.
-
Saito T, Owen DM, Jiang F, Marcotrigiano J, Gale M, Jr. 2008. Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA. Nature 454:523-527.
-
(2008)
Nature
, vol.454
, pp. 523-527
-
-
Saito, T.1
Owen, D.M.2
Jiang, F.3
Marcotrigiano, J.4
Gale Jr., M.5
-
36
-
-
17344373821
-
Spatial requirements for promoter recognition by a viral RNA-dependent RNA polymerase
-
Stawicki S, Kao CC. 1999. Spatial requirements for promoter recognition by a viral RNA-dependent RNA polymerase. J. Virol. 73:198-204.
-
(1999)
J. Virol.
, vol.73
, pp. 198-204
-
-
Stawicki, S.1
Kao, C.C.2
-
37
-
-
0036204740
-
A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids
-
Schwartz M, et al. 2002. A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids. Mol. Cell 9:505-514.
-
(2002)
Mol. Cell.
, vol.9
, pp. 505-514
-
-
Schwartz, M.1
-
38
-
-
3843102498
-
Alternate, virus-induced membrane rearrangements support positive-strand RNA virus genome replication
-
Schwartz M, Chen J, Lee WM, Janda M, Ahlquist P. 2004. Alternate, virus-induced membrane rearrangements support positive-strand RNA virus genome replication. Proc. Natl. Acad. Sci. U. S. A. 101:11263-11268.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 11263-11268
-
-
Schwartz, M.1
Chen, J.2
Lee, W.M.3
Janda, M.4
Ahlquist, P.5
-
39
-
-
0033521206
-
RNA sequence and structural determinants for the recognition and efficiency of RNA synthesis by a viral RNA replicase
-
Sivakumaran K, Kim CH, Tayon R, Kao C. 1999. RNA sequence and structural determinants for the recognition and efficiency of RNA synthesis by a viral RNA replicase. J. Mol. Biol. 294:667-682.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 667-682
-
-
Sivakumaran, K.1
Kim, C.H.2
Tayon, R.3
Kao, C.4
-
40
-
-
58149119454
-
Evidence for alternate states of cucumber mosaic virus replicase assembly in positive- and negative-strand RNA synthesis.
-
Seo J-K, Kwon S-J, Choi H-S, Kim K-H. 2009. Evidence for alternate states of cucumber mosaic virus replicase assembly in positive- and negative-strand RNA synthesis. Virology 383:284-290.
-
(2009)
Virology
, vol.383
, pp. 284-290
-
-
Seo, J.-K.1
Kwon, S.-J.2
Choi, H.-S.3
Kim, K.-H.4
-
41
-
-
0029903012
-
The polymerase-like core of brome mosaic virus 2a protein, lacking a region interacting with viral 1a in vitro, maintains activity and 1a selectivity in RNA replication
-
Smirnyagina E, Lin N, Ahlquist P. 1996. The polymerase-like core of brome mosaic virus 2a protein, lacking a region interacting with viral 1a in vitro, maintains activity and 1a selectivity in RNA replication. J. Virol. 70:4729-4736.
-
(1996)
J. Virol.
, vol.70
, pp. 4729-4736
-
-
Smirnyagina, E.1
Lin, N.2
Ahlquist, P.3
-
42
-
-
84855826064
-
VPg-primed RNA synthesis of norovirus RNA-dependent RNA polymerases by using a novel cell-based assay
-
Subba-Reddy CV, Goodfellow I, Kao CC. 2011. VPg-primed RNA synthesis of norovirus RNA-dependent RNA polymerases by using a novel cell-based assay. J. Virol. 85:13027-13037.
-
(2011)
J. Virol.
, vol.85
, pp. 13027-13037
-
-
Subba-Reddy, C.V.1
Goodfellow, I.2
Kao, C.C.3
-
43
-
-
0030560789
-
Initiation of negative-strand RNA synthesis catalyzed by the brome mosaic virus RNA-dependent RNA polymerase: synthesis of oligonucleotides
-
Sun J, Adkins S, Faurote G, Kao CC. 1996. Initiation of negative-strand RNA synthesis catalyzed by the brome mosaic virus RNA-dependent RNA polymerase: synthesis of oligonucleotides. Virology 226:1-12.
-
(1996)
Virology
, vol.226
, pp. 1-12
-
-
Sun, J.1
Adkins, S.2
Faurote, G.3
Kao, C.C.4
-
44
-
-
33744965385
-
Structural and functional analyses of the human Tolllike receptor 3. Role of glycosylation
-
Sun J, et al. 2006. Structural and functional analyses of the human Tolllike receptor 3. Role of glycosylation. J. Biol. Chem. 281:11144-11151.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 11144-11151
-
-
Sun, J.1
-
45
-
-
0025944628
-
Deletion analysis of brome mosaic virus 2a protein: effects on RNA replication and systemic spread
-
Traynor P, Young BM, Ahlquist P. 1991. Deletion analysis of brome mosaic virus 2a protein: effects on RNA replication and systemic spread. J. Virol. 65:2807-2815
-
(1991)
J. Virol.
, vol.65
, pp. 28072815
-
-
Traynor, P.1
Young, B.M.2
Ahlquist, P.3
-
46
-
-
66149114745
-
Nucleotide sequences and modifications that determine RIG-I/RNA binding and signaling activities
-
Uzri D, Gehrke L. 2009. Nucleotide sequences and modifications that determine RIG-I/RNA binding and signaling activities. J. Virol. 83:4174-4184.
-
(2009)
J. Virol.
, vol.83
, pp. 4174-4184
-
-
Uzri, D.1
Gehrke, L.2
-
47
-
-
27144503011
-
Brome mosaic virus 1a nucleoside triphosphatase/helicase domain plays crucial roles in recruiting RNA replication templates
-
Wang X, et al. 2005. Brome mosaic virus 1a nucleoside triphosphatase/helicase domain plays crucial roles in recruiting RNA replication templates. J. Virol. 79:13747-13758.
-
(2005)
J. Virol.
, vol.79
, pp. 13747-13758
-
-
Wang, X.1
|