Forced binding of the origin of replication complex to chromosomal sites in Drosophila S2 cells creates an origin of replication Gilles Crevel and Sue Cotterill

Journal of Cell Science

Volumn 125, Issue 4, 2012, Pages 965-972

  Crevel, Gilles ^a   Cotterill, Sue ^a  

^a ST GEORGE'S UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

DNA replication; Drosophila S2 cells; Gal4; Histone acetylation; Orc; Origin of replication

Indexed keywords

HISTONE H4; TRANSCRIPTION FACTOR GAL4;

ARTICLE; BINDING SITE; CELL CYCLE S PHASE; CONTROLLED STUDY; DNA REPLICATION ORIGIN; DROSOPHILA; HISTONE ACETYLATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN;

ACETYLATION; ANIMALS; BASE SEQUENCE; BINDING SITES; CELL CYCLE PROTEINS; CELL LINE; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOMES, INSECT; DNA REPLICATION; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; HISTONES; LYSINE; ORIGIN RECOGNITION COMPLEX; PLASMIDS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; REPLICATION ORIGIN; S PHASE; SACCHAROMYCES CEREVISIAE PROTEINS; TIME FACTORS; TRANSCRIPTION FACTORS;

EUKARYOTA;

EID: 84861218342     PISSN: 00219533     EISSN: 14779137     Source Type: Journal    
DOI: 10.1242/jcs.094409     Document Type: Article

References (27)

1. Aggarwal, B. D. and Calvi, B. R. (2004). Chromatin regulates origin activity in Drosophila follicle cells. Nature 430, 372-376.
2. Bielinsky, A. K. and Gerbi, S. A. (1998). Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science 279, 95-98.
3. Borlado, L. R. and Mendez, J. (2008). CDC6: from DNA replication to cell cycle checkpoints and oncogenesis. Carcinogenesis 29, 237-243.
4. Brand, A. H. and Perrimon, N. (1993). Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118, 401-415.
5. Breiling, A. and Orlando, V. (2005). Chromatin immunoprecipitation (ChIP) of protein complexes: mapping of genomic targets of nuclear proteins in cultured cells. In Protein-Protein Interactions (ed. E. A. Golemis and P. D. Adams). New York: Cold Spring Harbor Press.
6. Cayrou, C., Coulombe, P. and Mechali, M. (2010). Programming DNA replication origins and chromosome organization. Chromosome Res. 18, 137-145.
7. Cotterill, S. and Kearsey, S. E. (2009). DNAReplication: a database of information and resources for the eukaryotic DNA replication community. Nucleic Acids Res. 37, D837-D839.
8. Crevel, G., Ivetic, A., Ohno, K., Yamaguchi, M. and Cotterill, S. (2001). Nearest neighbour analysis of MCM protein complexes in Drosophila melanogaster. Nucleic Acids Res. 29, 4834-4842.
9. Crevel, G., Mathe, E. and Cotterill, S., (2005). The Drosophila Cdc6/18 protein has functions in both early and late S phase in S2 cells. J. Cell Sci. 118, 2451-2459.
10. Di Paola, D., Rampakakis, E., Chan, M. K., Arvanitis, D. N. and Zannis-Hadjopoulos, M. (2010). Increased origin activity in transformed versus normal cells: identification of novel protein players involved in DNA replication and cellular transformation. Nucleic Acids Res. 38, 2314-2331.
11. Dorn, E. S., Chastain, P. D. n., Hall, J. R. and Cook, J. G. (2009). Analysis of re-replication from deregulated origin licensing by DNA fiber spreading. Nucleic Acids Res. 37, 60-69.
12. Eaton, M. L., Prinz, J. A., MacAlpine, H. K., Tretyakov, G., Kharchenko, P. V. and MacAlpine, D. M. (2011). Chromatin signatures of the Drosophila replication program. Genome Res. 21, 164-174.
13. Goren, A., Tabib, A., Hecht, M. and Cedar H. (2008). DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin. Genes Dev. 22, 1319-1324.
14. Hanada, K., Budzowska, M., Davies, S. L., van Drunen, E., Onizawa, H., Beverloo, H. B., Maas, A., Essers, J., Hickson, I. D. and Kanaar, R. (2007). The structurespecific endonuclease Mus81 contributes to replication restart by generating doublestrand DNA breaks. Nat. Struct. Mol. Biol. 14, 1096-1104.
15. Ina, S., Sasaki, T., Yokota, Y. and Shinomiya, T. (2001). A broad replication origin of Drosophila melanogaster, oriDalpha, consists of AT-rich multiple discrete initiation sites. Chromosoma 109, 551-564.
16. Karnani, N., Taylor, C. M., Malhotra, A. and Dutta, A. (2010). Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection. Mol. Biol. Cell 21, 393-404.
17. Labib, K. (2010). How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells? Genes Dev. 24, 1208-1219.
18. MacAlpine, D. M., Rodriguez, H. K. and Bell, S. P. (2004). Coordination of replication and transcription along a Drosophila chromosome. Genes Dev. 18, 3094-3105.
19. Miotto, B. and Struhl, K. (2010). HBO1 histone acetylase activity is essential for DNA replication licensing and inhibited by Geminin. Mol. Cell 37, 57-66.
20. Nieduszynski, C. A., Hiraga, S., Ak, P., Benham, C. J. and Donaldson, A. D. (2007). OriDB: a DNA replication origin database. Nucleic Acids Res. 35, D40-D46.
21. Rozen, S. and Skaletsky, H. (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132, 365-386.
22. Segurado, M. A., de Luis, A. and Antequera, F. (2003). Genome-wide distribution of DNA replication origins at A+T-rich islands in Schizosaccharomyces pombe. EMBO Rep. 4, 1048-1053.
23. Stanojcic, S., Lemaitre, J. M., Brodolin, K., Danis, E. and Mechali, M. (2008). In Xenopus egg extracts, DNA replication initiates preferentially at or near asymmetric AT sequences. Mol. Cell. Biol. 28, 5265-5274.
24. Takeda, D. Y., Shibata, Y., Parvin, J. D. and Dutta, A. (2005). Recruitment of ORC or CDC6 to DNA is sufficient to create an artificial origin of replication in mammalian cells. Genes Dev. 19, 2827-2836.
25. Toth, J. and Biggin, M. D. (2000). The specificity of protein-DNA crosslinking by formaldehyde: in vitro and in Drosophila embryos. Nucleic Acids Res. 28, e4.
26. Vogelauer, M., Rubbi, L., Lucas, I., Brewer, B. J. and Grunstein, M. (2002). Histone acetylation regulates the time of replication origin firing. Mol. Cell 10, 1223-1233.
27. Willers, H., McCarthy, E. E., Hubbe, P., Dahm-Daphi, J. and Powell, S. N. (2001). Homologous recombination in extrachromosomal plasmid substrates is not suppressed by p53. Carcinogenesis 22, 1757-1763.