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Volumn 8, Issue 4, 2012, Pages

Tension and robustness in multitasking cellular networks

Author keywords

[No Author keywords available]

Indexed keywords

DYNAMICS; ECONOMIC AND SOCIAL EFFECTS; GENES; MOBILE TELECOMMUNICATION SYSTEMS; WIRELESS NETWORKS;

EID: 84861145815     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002491     Document Type: Article
Times cited : (8)

References (51)
  • 1
    • 0028872649 scopus 로고
    • Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation
    • Marshall CJ, (1995) Specificity of receptor tyrosine kinase signaling: transient versus sustained extracellular signal-regulated kinase activation. Cell 80: 179-185.
    • (1995) Cell , vol.80 , pp. 179-185
    • Marshall, C.J.1
  • 4
  • 5
    • 67349091738 scopus 로고    scopus 로고
    • The ups and downs of p53: understanding protein dynamics in single cells
    • Batchelor E, Loewer A, Lahav G, (2009) The ups and downs of p53: understanding protein dynamics in single cells. Nat Rev Cancer 9: 371-377.
    • (2009) Nat Rev Cancer , vol.9 , pp. 371-377
    • Batchelor, E.1    Loewer, A.2    Lahav, G.3
  • 7
    • 2442535151 scopus 로고    scopus 로고
    • Survey of multi-objective optimization methods for engineering
    • Arora JS, Marler RT, (2004) Survey of multi-objective optimization methods for engineering. Struct Multidisc Optim 26: 369-395.
    • (2004) Struct Multidisc Optim , vol.26 , pp. 369-395
    • Arora, J.S.1    Marler, R.T.2
  • 8
    • 34248385237 scopus 로고    scopus 로고
    • Multiobjective optimization in bioinformatics and computational biology
    • Handl J, Kell DB, Knowles J, (2007) Multiobjective optimization in bioinformatics and computational biology. IEEE/ACM Trans Comput Biol Bioinform 4: 279-292.
    • (2007) IEEE/ACM Trans Comput Biol Bioinform , vol.4 , pp. 279-292
    • Handl, J.1    Kell, D.B.2    Knowles, J.3
  • 9
    • 0034306996 scopus 로고    scopus 로고
    • The Rb/E2F pathway: expanding roles and emerging paradigms
    • Harbour JW, Dean DC, (2000) The Rb/E2F pathway: expanding roles and emerging paradigms. Genes Dev 14: 2393-2409.
    • (2000) Genes Dev , vol.14 , pp. 2393-2409
    • Harbour, J.W.1    Dean, D.C.2
  • 10
    • 0035063183 scopus 로고    scopus 로고
    • The Rb/E2F pathway and cancer
    • Nevins JR, (2001) The Rb/E2F pathway and cancer. Hum Mol Genet 10: 699-703.
    • (2001) Hum Mol Genet , vol.10 , pp. 699-703
    • Nevins, J.R.1
  • 11
    • 47049087588 scopus 로고    scopus 로고
    • A role for Myc in facilitating transcription activation by E2F1
    • Leung JY, Ehmann GL, Giangrande PH, Nevins JR, (2008) A role for Myc in facilitating transcription activation by E2F1. Oncogene 27: 4172-9.
    • (2008) Oncogene , vol.27 , pp. 4172-4179
    • Leung, J.Y.1    Ehmann, G.L.2    Giangrande, P.H.3    Nevins, J.R.4
  • 12
    • 0028364529 scopus 로고
    • Autoregulatory control of E2F1 expression in response to positive and negative regulators of cell cycle progression
    • Johnson DG, Ohtani K, Nevins JR, (1994) Autoregulatory control of E2F1 expression in response to positive and negative regulators of cell cycle progression. Genes Dev 8: 1514-1525.
    • (1994) Genes Dev , vol.8 , pp. 1514-1525
    • Johnson, D.G.1    Ohtani, K.2    Nevins, J.R.3
  • 13
    • 0029583648 scopus 로고
    • Regulation of the cyclin E gene by transcription factor E2F1
    • Ohtani K, DeGregori J, Nevins JR, (1995) Regulation of the cyclin E gene by transcription factor E2F1. Proc Natl Acad Sci U S A 92: 12146-12150.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 12146-12150
    • Ohtani, K.1    DeGregori, J.2    Nevins, J.R.3
  • 14
    • 0028362359 scopus 로고
    • Negative regulation of the growth-promoting transcription factor E2F-1 by a stably bound cyclin A-dependent protein kinase
    • Krek W, Ewen ME, Shirodkar S, Arany Z, Kaelin WG Jr, et al. (1994) Negative regulation of the growth-promoting transcription factor E2F-1 by a stably bound cyclin A-dependent protein kinase. Cell 78: 161-172.
    • (1994) Cell , vol.78 , pp. 161-172
    • Krek, W.1    Ewen, M.E.2    Shirodkar, S.3    Arany, Z.4    Kaelin Jr., W.G.5
  • 15
    • 0033130137 scopus 로고    scopus 로고
    • Interaction between ubiquitin-protein ligase SCFSKP2 and E2F-1 underlies the regulation of E2F-1 degradation
    • Marti A, Wirbelauer C, Scheffner M, Krek W, (1999) Interaction between ubiquitin-protein ligase SCFSKP2 and E2F-1 underlies the regulation of E2F-1 degradation. Nat Cell Biol 1: 14-19.
    • (1999) Nat Cell Biol , vol.1 , pp. 14-19
    • Marti, A.1    Wirbelauer, C.2    Scheffner, M.3    Krek, W.4
  • 18
    • 43149108161 scopus 로고    scopus 로고
    • A bistable Rb-E2F switch underlies the restriction point
    • Yao G, Lee TJ, Mori S, Nevins JR, You L, (2008) A bistable Rb-E2F switch underlies the restriction point. Nat Cell Biol 10: 476-482.
    • (2008) Nat Cell Biol , vol.10 , pp. 476-482
    • Yao, G.1    Lee, T.J.2    Mori, S.3    Nevins, J.R.4    You, L.5
  • 19
    • 0003418645 scopus 로고
    • A restriction point for control of normal animal cell proliferation
    • Pardee AB, (1974) A restriction point for control of normal animal cell proliferation. Proc Natl Acad Sci U S A 71: 1286-1290.
    • (1974) Proc Natl Acad Sci U S A , vol.71 , pp. 1286-1290
    • Pardee, A.B.1
  • 20
    • 79251573545 scopus 로고    scopus 로고
    • Viral-Mediated Noisy Gene Expression Reveals Biphasic E2f1 Response to MYC
    • Wong JV, Yao G, Nevins JR, You L, (2011) Viral-Mediated Noisy Gene Expression Reveals Biphasic E2f1 Response to MYC. Mol Cell 41: 275-285.
    • (2011) Mol Cell , vol.41 , pp. 275-285
    • Wong, J.V.1    Yao, G.2    Nevins, J.R.3    You, L.4
  • 21
    • 0032528027 scopus 로고    scopus 로고
    • E2F3 activity is regulated during the cell cycle and is required for the induction of S phase
    • Leone G, DeGregori J, Yan Z, Jakoi L, Ishida S, et al. (1998) E2F3 activity is regulated during the cell cycle and is required for the induction of S phase. Genes Dev 12: 2120-2130.
    • (1998) Genes Dev , vol.12 , pp. 2120-2130
    • Leone, G.1    DeGregori, J.2    Yan, Z.3    Jakoi, L.4    Ishida, S.5
  • 22
    • 33845768380 scopus 로고    scopus 로고
    • E2f1, E2f2, and E2f3 control E2F target expression and cellular proliferation via a p53-dependent negative feedback loop
    • Timmers C, Sharma N, Opavsky R, Maiti B, Wu L, et al. (2007) E2f1, E2f2, and E2f3 control E2F target expression and cellular proliferation via a p53-dependent negative feedback loop. Mol Cell Biol 27: 65-78.
    • (2007) Mol Cell Biol , vol.27 , pp. 65-78
    • Timmers, C.1    Sharma, N.2    Opavsky, R.3    Maiti, B.4    Wu, L.5
  • 23
    • 58149328931 scopus 로고    scopus 로고
    • miR-17 and miR-20a temper an E2F1-induced G1 checkpoint to regulate cell cycle progression
    • Pickering MT, Stadler BM, Kowalik TF, (2008) miR-17 and miR-20a temper an E2F1-induced G1 checkpoint to regulate cell cycle progression. Oncogene 28: 140-5.
    • (2008) Oncogene , vol.28 , pp. 140-145
    • Pickering, M.T.1    Stadler, B.M.2    Kowalik, T.F.3
  • 24
    • 0029559027 scopus 로고
    • Cyclin A-kinase regulation of E2F-1 DNA binding function underlies suppression of an S phase checkpoint
    • Krek W, Xu G, Livingston DM, (1995) Cyclin A-kinase regulation of E2F-1 DNA binding function underlies suppression of an S phase checkpoint. Cell 83: 1149-1158.
    • (1995) Cell , vol.83 , pp. 1149-1158
    • Krek, W.1    Xu, G.2    Livingston, D.M.3
  • 25
    • 68749118345 scopus 로고    scopus 로고
    • Defining network topologies that can achieve biochemical adaptation
    • Ma W, Trusina A, El-Samad H, Lim WA, Tang C, (2009) Defining network topologies that can achieve biochemical adaptation. Cell 138: 760-773.
    • (2009) Cell , vol.138 , pp. 760-773
    • Ma, W.1    Trusina, A.2    El-Samad, H.3    Lim, W.A.4    Tang, C.5
  • 26
    • 0036284778 scopus 로고    scopus 로고
    • The anaphase-promoting complex: proteolysis in mitosis and beyond
    • Peters JM, (2002) The anaphase-promoting complex: proteolysis in mitosis and beyond. Mol Cell 9: 931-943.
    • (2002) Mol Cell , vol.9 , pp. 931-943
    • Peters, J.M.1
  • 27
    • 1642399624 scopus 로고    scopus 로고
    • Degradation of the SCF component Skp2 in cell-cycle phase G1 by the anaphase-promoting complex
    • Wei W, Ayad NG, Wan Y, Zhang GJ, Kirschner MW, et al. (2004) Degradation of the SCF component Skp2 in cell-cycle phase G1 by the anaphase-promoting complex. Nature 428: 194-198.
    • (2004) Nature , vol.428 , pp. 194-198
    • Wei, W.1    Ayad, N.G.2    Wan, Y.3    Zhang, G.J.4    Kirschner, M.W.5
  • 28
    • 33846534165 scopus 로고    scopus 로고
    • The APC/C inhibitor, Emi1, is essential for prevention of rereplication
    • Machida YJ, Dutta A, (2007) The APC/C inhibitor, Emi1, is essential for prevention of rereplication. Genes Dev 21: 184-194.
    • (2007) Genes Dev , vol.21 , pp. 184-194
    • Machida, Y.J.1    Dutta, A.2
  • 29
    • 0001616078 scopus 로고    scopus 로고
    • A conserved cyclin-binding domain determines functional interplay between anaphase-promoting complex-Cdh1 and cyclin A-Cdk2 during cell cycle progression
    • Sorensen CS, Lukas C, Kramer ER, Peters JM, Bartek J, et al. (2001) A conserved cyclin-binding domain determines functional interplay between anaphase-promoting complex-Cdh1 and cyclin A-Cdk2 during cell cycle progression. Mol Cell Biol 21: 3692-3703.
    • (2001) Mol Cell Biol , vol.21 , pp. 3692-3703
    • Sorensen, C.S.1    Lukas, C.2    Kramer, E.R.3    Peters, J.M.4    Bartek, J.5
  • 30
    • 0034737290 scopus 로고    scopus 로고
    • Exit from G1 and S phase of the cell cycle is regulated by repressor complexes containing HDAC-Rb-hSWI/SNF and Rb-hSWI/SNF
    • Zhang HS, Gavin M, Dahiya A, Postigo AA, Ma D, et al. (2000) Exit from G1 and S phase of the cell cycle is regulated by repressor complexes containing HDAC-Rb-hSWI/SNF and Rb-hSWI/SNF. Cell 101: 79-89.
    • (2000) Cell , vol.101 , pp. 79-89
    • Zhang, H.S.1    Gavin, M.2    Dahiya, A.3    Postigo, A.A.4    Ma, D.5
  • 31
    • 0036305474 scopus 로고    scopus 로고
    • Distinct roles for cyclins E and A during DNA replication complex assembly and activation
    • Coverley D, Laman H, Laskey RA, (2002) Distinct roles for cyclins E and A during DNA replication complex assembly and activation. Nat Cell Biol 4: 523-528.
    • (2002) Nat Cell Biol , vol.4 , pp. 523-528
    • Coverley, D.1    Laman, H.2    Laskey, R.A.3
  • 32
    • 25144525540 scopus 로고    scopus 로고
    • CDKs promote DNA replication origin licensing in human cells by protecting Cdc6 from APC/C-dependent proteolysis
    • Mailand N, Diffley JF, (2005) CDKs promote DNA replication origin licensing in human cells by protecting Cdc6 from APC/C-dependent proteolysis. Cell 122: 915-926.
    • (2005) Cell , vol.122 , pp. 915-926
    • Mailand, N.1    Diffley, J.F.2
  • 33
    • 80051716158 scopus 로고    scopus 로고
    • Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change
    • Eser U, Falleur-Fettig M, Johnson A, Skotheim Jan M, (2011) Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change. Molecular Cell 43: 515-527.
    • (2011) Molecular Cell , vol.43 , pp. 515-527
    • Eser, U.1    Falleur-Fettig, M.2    Johnson, A.3    Skotheim Jan, M.4
  • 34
    • 80051715597 scopus 로고    scopus 로고
    • Simple Rules for Complex Processes: New Lessons from the Budding Yeast Cell Cycle
    • Ferrell James E, (2011) Simple Rules for Complex Processes: New Lessons from the Budding Yeast Cell Cycle. Molecular Cell 43: 497-500.
    • (2011) Molecular Cell , vol.43 , pp. 497-500
    • Ferrell James, E.1
  • 35
    • 50649086353 scopus 로고    scopus 로고
    • Mouse development with a single E2F activator
    • Tsai SY, Opavsky R, Sharma N, Wu L, Naidu S, et al. (2008) Mouse development with a single E2F activator. Nature 454: 1137-1141.
    • (2008) Nature , vol.454 , pp. 1137-1141
    • Tsai, S.Y.1    Opavsky, R.2    Sharma, N.3    Wu, L.4    Naidu, S.5
  • 36
    • 0035936113 scopus 로고    scopus 로고
    • The E2F1-3 transcription factors are essential for cellular proliferation
    • Wu L, Timmers C, Maiti B, Saavedra HI, Sang L, et al. (2001) The E2F1-3 transcription factors are essential for cellular proliferation. Nature 414: 457-462.
    • (2001) Nature , vol.414 , pp. 457-462
    • Wu, L.1    Timmers, C.2    Maiti, B.3    Saavedra, H.I.4    Sang, L.5
  • 37
    • 46849090495 scopus 로고    scopus 로고
    • Robust, tunable biological oscillations from interlinked positive and negative feedback loops
    • Tsai TY, Choi YS, Ma W, Pomerening JR, Tang C, et al. (2008) Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 321: 126-129.
    • (2008) Science , vol.321 , pp. 126-129
    • Tsai, T.Y.1    Choi, Y.S.2    Ma, W.3    Pomerening, J.R.4    Tang, C.5
  • 38
    • 64849104716 scopus 로고    scopus 로고
    • Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription
    • Ashall L, Horton CA, Nelson DE, Paszek P, Harper CV, et al. (2009) Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription. Science 324: 242-246.
    • (2009) Science , vol.324 , pp. 242-246
    • Ashall, L.1    Horton, C.A.2    Nelson, D.E.3    Paszek, P.4    Harper, C.V.5
  • 39
    • 0037076210 scopus 로고    scopus 로고
    • Robustness, flexibility, and the role of lateral inhibition in the neurogenic network
    • Meir E, von Dassow G, Munro E, Odell GM, (2002) Robustness, flexibility, and the role of lateral inhibition in the neurogenic network. Curr Biol 12: 778-786.
    • (2002) Curr Biol , vol.12 , pp. 778-786
    • Meir, E.1    von Dassow, G.2    Munro, E.3    Odell, G.M.4
  • 40
    • 0033617522 scopus 로고    scopus 로고
    • Notch signaling: cell fate control and signal integration in development
    • Artavanis-Tsakonas S, Rand MD, Lake RJ, (1999) Notch signaling: cell fate control and signal integration in development. Science 284: 770-776.
    • (1999) Science , vol.284 , pp. 770-776
    • Artavanis-Tsakonas, S.1    Rand, M.D.2    Lake, R.J.3
  • 41
    • 0032006747 scopus 로고    scopus 로고
    • The evolution of 'bricolage'
    • Duboule D, Wilkins AS, (1998) The evolution of 'bricolage'. Trends Genet 14: 54-59.
    • (1998) Trends Genet , vol.14 , pp. 54-59
    • Duboule, D.1    Wilkins, A.S.2
  • 42
    • 33847355217 scopus 로고    scopus 로고
    • Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate
    • Santos SD, Verveer PJ, Bastiaens PI, (2007) Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate. Nat Cell Biol 9: 324-330.
    • (2007) Nat Cell Biol , vol.9 , pp. 324-330
    • Santos, S.D.1    Verveer, P.J.2    Bastiaens, P.I.3
  • 43
    • 42949171936 scopus 로고    scopus 로고
    • Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage
    • Batchelor E, Mock CS, Bhan I, Loewer A, Lahav G, (2008) Recurrent initiation: a mechanism for triggering p53 pulses in response to DNA damage. Mol Cell 30: 277-289.
    • (2008) Mol Cell , vol.30 , pp. 277-289
    • Batchelor, E.1    Mock, C.S.2    Bhan, I.3    Loewer, A.4    Lahav, G.5
  • 44
    • 0035795408 scopus 로고    scopus 로고
    • Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint
    • Geley S, Kramer E, Gieffers C, Gannon J, Peters JM, et al. (2001) Anaphase-promoting complex/cyclosome-dependent proteolysis of human cyclin A starts at the beginning of mitosis and is not subject to the spindle assembly checkpoint. J Cell Biol 153: 137-148.
    • (2001) J Cell Biol , vol.153 , pp. 137-148
    • Geley, S.1    Kramer, E.2    Gieffers, C.3    Gannon, J.4    Peters, J.M.5
  • 45
    • 79955553550 scopus 로고    scopus 로고
    • Origin of bistability underlying mammalian cell cycle entry
    • Yao G, Tan C, West M, Nevins JR, You L, (2011) Origin of bistability underlying mammalian cell cycle entry. Mol Syst Biol 7: 485.
    • (2011) Mol Syst Biol , vol.7 , pp. 485
    • Yao, G.1    Tan, C.2    West, M.3    Nevins, J.R.4    You, L.5
  • 46
    • 80052493200 scopus 로고    scopus 로고
    • Synthetic biology: integrated gene circuits
    • Nandagopal N, Elowitz MB, (2011) Synthetic biology: integrated gene circuits. Science 333: 1244-1248.
    • (2011) Science , vol.333 , pp. 1244-1248
    • Nandagopal, N.1    Elowitz, M.B.2
  • 47
    • 66249088017 scopus 로고    scopus 로고
    • The second wave of synthetic biology: from modules to systems
    • Purnick PE, Weiss R, (2009) The second wave of synthetic biology: from modules to systems. Nat Rev Mol Cell Biol 10: 410-422.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 410-422
    • Purnick, P.E.1    Weiss, R.2
  • 48
    • 70350324632 scopus 로고    scopus 로고
    • Emergent bistability by a growth-modulating positive feedback circuit
    • Tan C, Marguet P, You L, (2009) Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol 5: 842-848.
    • (2009) Nat Chem Biol , vol.5 , pp. 842-848
    • Tan, C.1    Marguet, P.2    You, L.3
  • 49
    • 24944489952 scopus 로고    scopus 로고
    • Stimulus specificity of gene expression programs determined by temporal control of IKK activity
    • Werner SL, Barken D, Hoffmann A, (2005) Stimulus specificity of gene expression programs determined by temporal control of IKK activity. Science 309: 1857-1861.
    • (2005) Science , vol.309 , pp. 1857-1861
    • Werner, S.L.1    Barken, D.2    Hoffmann, A.3
  • 50
    • 24944586285 scopus 로고    scopus 로고
    • Achieving stability of lipopolysaccharide-induced NF-kappaB activation
    • Covert MW, Leung TH, Gaston JE, Baltimore D, (2005) Achieving stability of lipopolysaccharide-induced NF-kappaB activation. Science 309: 1854-1857.
    • (2005) Science , vol.309 , pp. 1854-1857
    • Covert, M.W.1    Leung, T.H.2    Gaston, J.E.3    Baltimore, D.4
  • 51
    • 17344362384 scopus 로고    scopus 로고
    • Prediction and validation of the distinct dynamics of transient and sustained ERK activation
    • Sasagawa S, Ozaki Y, Fujita K, Kuroda S, (2005) Prediction and validation of the distinct dynamics of transient and sustained ERK activation. Nat Cell Biol 7: 365-373.
    • (2005) Nat Cell Biol , vol.7 , pp. 365-373
    • Sasagawa, S.1    Ozaki, Y.2    Fujita, K.3    Kuroda, S.4


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