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Volumn 7, Issue 2, 2012, Pages 132-142

Recent advances in predicting G-protein coupled receptor classification

Author keywords

Cellular automata; G protein coupled receptor; Protein sequence image expression; Pseudo amino acid composition; Sequence derived features

Indexed keywords

CLASSIFICATION (OF INFORMATION); CYTOLOGY; PROTEINS;

EID: 84861127982     PISSN: 15748936     EISSN: None     Source Type: Journal    
DOI: 10.2174/157489312800604426     Document Type: Review
Times cited : (6)

References (88)
  • 1
    • 41149137801 scopus 로고    scopus 로고
    • Activatiion of G Protein-Coupled receptors: Beyond two-state models and tertiary conformational changes
    • Park PS-H, Lodowski DT, Palczewski K. Activatiion of G Protein-Coupled receptors: Beyond two-state models and tertiary conformational changes. Annual Rev Pharmacol Toxicol 2008; 107-141.
    • (2008) Annual Rev Pharmacol Toxicol , pp. 107-141
    • Park, P.S.-H.1    Lodowski, D.T.2    Palczewski, K.3
  • 2
    • 0346882649 scopus 로고    scopus 로고
    • G-protein-coupled receptors at a glance
    • Kroeze WK, Sheffler DJ, Roth BL. G-protein-coupled receptors at a glance. J Cell Sci 2003; 24: 4867-4869.
    • (2003) J Cell Sci , vol.24 , pp. 4867-4869
    • Kroeze, W.K.1    Sheffler, D.J.2    Roth, B.L.3
  • 3
    • 77958049430 scopus 로고    scopus 로고
    • G Protein-Coupled receptors in child development, growth, and maturation
    • Latronico AC, Hochberg, Z. G Protein-Coupled receptors in child development, growth, and maturation. Sci Signal 2010; 3: re7.
    • (2010) Sci Signal , vol.3 , pp. 7
    • Latronico, A.C.1    Hochberg, Z.2
  • 4
    • 61649096359 scopus 로고    scopus 로고
    • G-protein-coupled receptor-focused drug discovery using a target class platform approach
    • Heilker R, Wolff M, Tautermann CS, Bieler M. G-protein-coupled receptor-focused drug discovery using a target class platform approach. Drug Discov Today 2009; 14: 231-240.
    • (2009) Drug Discov Today , vol.14 , pp. 231-240
    • Heilker, R.1    Wolff, M.2    Tautermann, C.S.3    Bieler, M.4
  • 5
    • 33745228436 scopus 로고    scopus 로고
    • New tools for G-protein coupled receptor (GPCR) drug discovery: Combination of baculoviral expression system and solid state NMR
    • Ratnala VRP. New tools for G-protein coupled receptor (GPCR) drug discovery: combination of baculoviral expression system and solid state NMR. Biotechnol Lett 2006; 767-778.
    • (2006) Biotechnol Lett , pp. 767-778
    • Ratnala, V.R.P.1
  • 6
    • 72049126087 scopus 로고    scopus 로고
    • G Protein-coupled receptors as targets for drug design
    • Veulens AdlN, Rodrigues R. G Protein-coupled receptors as targets for drug design. Biotecnol Aplicada 2009; 24-33.
    • (2009) Biotecnol Aplicada , pp. 24-33
    • Veulens, A.1    Rodrigues, R.2
  • 8
    • 78650845707 scopus 로고    scopus 로고
    • G protein-coupled receptors: Novel targets for drug discovery in cancer
    • Lappano R, Maggiolini M. G protein-coupled receptors: novel targets for drug discovery in cancer. Nat Rev Drug Discov 2011; 10: 47-60.
    • (2011) Nat Rev Drug Discov , vol.10 , pp. 47-60
    • Lappano, R.1    Maggiolini, M.2
  • 9
    • 0031803634 scopus 로고    scopus 로고
    • GPCRDB: An information system for G protein-coupled receptor
    • Horn F, Weare J, Beukers MW, et al. GPCRDB: an information system for G protein-coupled receptor. Nucleic Acids Res 1998; 26; 275-279.
    • (1998) Nucleic Acids Res , vol.26 , pp. 275-279
    • Horn, F.1    Weare, J.2    Beukers, M.W.3
  • 11
    • 78651297517 scopus 로고    scopus 로고
    • GPCRDB: Information system for G protein-coupled receptors
    • Vroling B, Sanders M, Baakman C, et al. GPCRDB: information system for G protein-coupled receptors. Nucleic Acids Res 2011; 39: D309-319.
    • (2011) Nucleic Acids Res , vol.39 , pp. 309-319
    • Vroling, B.1    Sanders, M.2    Baakman, C.3
  • 12
    • 75949094235 scopus 로고    scopus 로고
    • New vistas in GPCR 3D structure prediction
    • Rayan A. New vistas in GPCR 3D structure prediction. J Mol Model 2009; 16: 183-191.
    • (2009) J Mol Model , vol.16 , pp. 183-191
    • Rayan, A.1
  • 13
    • 38749106195 scopus 로고    scopus 로고
    • Structure and mechanism of the M2 proton channel of influenza A virus
    • Schnell JR, Chou JJ. Structure and mechanism of the M2 proton channel of influenza A virus. Nature 2008; 451: 591-595.
    • (2008) Nature , vol.451 , pp. 591-595
    • Schnell, J.R.1    Chou, J.J.2
  • 14
    • 33750022623 scopus 로고    scopus 로고
    • The structure of the zeta zeta transmembrane dimer reveals features essential for its assembly with the T cell receptor
    • Call ME, Schnell JR, Xu CQ, Lutz RA, Chou JJ, Wucherpfennig KW. The structure of the zeta zeta transmembrane dimer reveals features essential for its assembly with the T cell receptor. Cell 2006; 127: 355-368.
    • (2006) Cell , vol.127 , pp. 355-368
    • Call, M.E.1    Schnell, J.R.2    Xu, C.Q.3    Lutz, R.A.4    Chou, J.J.5    Wucherpfennig, K.W.6
  • 15
    • 34249856814 scopus 로고    scopus 로고
    • DNA-nanotube-induced alignment of membrane proteins for NMR structure determination
    • Douglas SM, Chou JJ, Shih WM. DNA-nanotube-induced alignment of membrane proteins for NMR structure determination. P Natl Acad Sci USA 2007; 104: 6644-6648.
    • (2007) P Natl Acad Sci USA , vol.104 , pp. 6644-6648
    • Douglas, S.M.1    Chou, J.J.2    Shih, W.M.3
  • 16
    • 23344441824 scopus 로고    scopus 로고
    • The structure of phospholamban pentamer reveals a channel-like architecture in membranes
    • Oxenoid K, Chou JJ. The structure of phospholamban pentamer reveals a channel-like architecture in membranes. P Natl Acad Sci USA 2005; 102: 10870-10875.
    • (2005) P Natl Acad Sci USA , vol.102 , pp. 10870-10875
    • Oxenoid, K.1    Chou, J.J.2
  • 17
    • 77958153191 scopus 로고    scopus 로고
    • The structural basis for intramembrane assembly of an activating immunoreceptor complex
    • Call ME, Wucherpfennig KW, Chou JJ. The structural basis for intramembrane assembly of an activating immunoreceptor complex. Nature Immunol 2010; 11: 1023-1029.
    • (2010) Nature Immunol , vol.11 , pp. 1023-1029
    • Call, M.E.1    Wucherpfennig, K.W.2    Chou, J.J.3
  • 18
    • 71449091133 scopus 로고    scopus 로고
    • Solution structure and functional analysis of the influenza B proton channel
    • Wang J, Pielak RM, McClintock MA, Chou JJ. Solution structure and functional analysis of the influenza B proton channel. Nat Struct Mol Biol 2009; 16: 1267-1271.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1267-1271
    • Wang, J.1    Pielak, R.M.2    McClintock, M.A.3    Chou, J.J.4
  • 20
    • 77957653235 scopus 로고    scopus 로고
    • Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel
    • Pielak RM, Chou JJ. Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel. Biochem Biophys Res Commun 2010; 401: 58-63.
    • (2010) Biochem Biophys Res Commun , vol.401 , pp. 58-63
    • Pielak, R.M.1    Chou, J.J.2
  • 21
    • 3242792729 scopus 로고    scopus 로고
    • Review: Structural bioinformatics and its impact to biomedical science
    • Chou KC. Review: Structural bioinformatics and its impact to biomedical science. Curr Med Chem 2004; 11: 2105-2134.
    • (2004) Curr Med Chem , vol.11 , pp. 2105-2134
    • Chou, K.C.1
  • 22
    • 78649458939 scopus 로고    scopus 로고
    • Analysis of protein pathway networks using hybrid properties
    • Chen L, Huang T, Shi XH, Cai YD, Chou KC. Analysis of protein pathway networks using hybrid properties. Molecules 2010; 15: 8177-8192 (Openly accessible at www.mdpi.com/journal/molecules).
    • (2010) Molecules , vol.15 , pp. 8177-8192
    • Chen, L.1    Huang, T.2    Shi, X.H.3    Cai, Y.D.4    Chou, K.C.5
  • 23
    • 0041848237 scopus 로고    scopus 로고
    • Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS
    • Erratum: ibid., 2003; 310: 675
    • Chou KC, Wei DQ, Zhong WZ. Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS. (Erratum: ibid., 2003; 310: 675). Biochem Biophys Res Comm 2003; 308: 148-151.
    • (2003) Biochem Biophys Res Comm , vol.308 , pp. 148-151
    • Chou, K.C.1    Wei, D.Q.2    Zhong, W.Z.3
  • 24
    • 77950448057 scopus 로고    scopus 로고
    • Predicting drug-target interaction networks based on functional groups and biological features
    • He Z, Zhang J, Shi XH, Hu LL, Kong X, Cai YD, Chou KC. Predicting drug-target interaction networks based on functional groups and biological features. PLoS ONE 2010; 5: e9603.
    • (2010) PLoS ONE , vol.5
    • He, Z.1    Zhang, J.2    Shi, X.H.3    Hu, L.L.4    Kong, X.5    Cai, Y.D.6    Chou, K.C.7
  • 25
    • 34247544233 scopus 로고    scopus 로고
    • Signal-CF: A subsite-coupled and windowfusing approach for predicting signal peptides
    • Chou KC, Shen HB. Signal-CF: a subsite-coupled and windowfusing approach for predicting signal peptides. Biochem Biophys Res Comm 2007; 357: 633-640.
    • (2007) Biochem Biophys Res Comm , vol.357 , pp. 633-640
    • Chou, K.C.1    Shen, H.B.2
  • 26
    • 34548606295 scopus 로고    scopus 로고
    • Review: Recent progresses in protein subcellular location prediction
    • Chou KC, Shen HB. Review: Recent progresses in protein subcellular location prediction. Anal Biochem 2007; 370: 1-16.
    • (2007) Anal Biochem , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 27
    • 79953316878 scopus 로고    scopus 로고
    • ILoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins
    • Chou KC, Wu ZC, Xiao X. ILoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins. PLoS One 2011; 6: e18258.
    • (2011) PLoS One , vol.6
    • Chou, K.C.1    Wu, Z.C.2    Xiao, X.3
  • 28
    • 77955199287 scopus 로고    scopus 로고
    • Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks
    • Huang T, Shi XH, Wang P, et al. Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks PLoS ONE 2010; 5: e10972.
    • (2010) PLoS ONE , vol.5
    • Huang, T.1    Shi, X.H.2    Wang, P.3
  • 29
    • 77952868004 scopus 로고    scopus 로고
    • Graphic rule for drug metabolism systems
    • Chou KC. Graphic rule for drug metabolism systems. Curr Drug Metab 2010; 11: 369-378.
    • (2010) Curr Drug Metab , vol.11 , pp. 369-378
    • Chou, K.C.1
  • 30
    • 77955673069 scopus 로고    scopus 로고
    • 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
    • Wu ZC, Xiao X, Chou KC. 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids. J Theor Biol 2010; 267: 29-34.
    • (2010) J Theor Biol , vol.267 , pp. 29-34
    • Wu, Z.C.1    Xiao, X.2    Chou, K.C.3
  • 31
    • 53149132374 scopus 로고    scopus 로고
    • ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information
    • Chou KC, Shen HB. ProtIdent: A web server for identifying proteases and their types by fusing functional domain and sequential evolution information. Biochem. Biophys Res Comm 2008; 376: 321-325.
    • (2008) Biochem. Biophys Res Comm , vol.376 , pp. 321-325
    • Chou, K.C.1    Shen, H.B.2
  • 32
    • 0027219970 scopus 로고
    • A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins
    • Chou KC. A vectorized sequence-coupling model for predicting HIV protease cleavage sites in proteins. J Biol Chem 1993; 268: 16938-16948.
    • (1993) J Biol Chem , vol.268 , pp. 16938-16948
    • Chou, K.C.1
  • 33
    • 0030049315 scopus 로고    scopus 로고
    • Review: Prediction of HIV protease cleavage sites in proteins
    • Chou KC. Review: Prediction of HIV protease cleavage sites in proteins. Anal Biochem 1996; 233: 1-14.
    • (1996) Anal Biochem , vol.233 , pp. 1-14
    • Chou, K.C.1
  • 34
    • 0034327349 scopus 로고    scopus 로고
    • Review: Prediction of tight turns and their types in proteins
    • Chou KC. Review: Prediction of tight turns and their types in proteins. Anal Biochem 2000; 286: 1-16.
    • (2000) Anal Biochem , vol.286 , pp. 1-16
    • Chou, K.C.1
  • 35
    • 0020102584 scopus 로고
    • Role of the protein outside active site on the diffusion-controlled reaction of enzyme
    • Chou KC, Zhou GP. Role of the protein outside active site on the diffusion-controlled reaction of enzyme. J Am Chem Soc 1982; 104: 1409-1413.
    • (1982) J Am Chem Soc , vol.104 , pp. 1409-1413
    • Chou, K.C.1    Zhou, G.P.2
  • 36
    • 77954074097 scopus 로고    scopus 로고
    • Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition
    • Chen L, Feng KY, Cai YD, Chou KC, Li HP. Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. BMC Bioinformatics 2010; 11: 293.
    • (2010) BMC Bioinformatics , vol.11 , pp. 293
    • Chen, L.1    Feng, K.Y.2    Cai, Y.D.3    Chou, K.C.4    Li, H.P.5
  • 37
    • 77649339280 scopus 로고    scopus 로고
    • Review: Recent advances in developing webservers for predicting protein attributes
    • Chou KC, Shen HB. Review: recent advances in developing webservers for predicting protein attributes. Nat Sci 2009; 2: 63-92 (openly accessible at http://www.scirp.org/journal/NS/).
    • (2009) Nat Sci , vol.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2
  • 38
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo amino acid composition
    • Chou KC. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins Struct Funct Genet 2001; 43: 246-255.
    • (2001) Proteins Struct Funct Genet , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 39
    • 70350448693 scopus 로고    scopus 로고
    • GPCR-GIA: A web server for identifying G-protein coupled receptors and their families with grey incidence analysis
    • Lin W-Z, Xiao X, Chou K-C. GPCR-GIA: a web server for identifying G-protein coupled receptors and their families with grey incidence analysis. Protein Eng Desing & Selection 2009; 22: 699-705.
    • (2009) Protein Eng Desing & Selection , vol.22 , pp. 699-705
    • Lin, W.-Z.1    Xiao, X.2    Chou, K.-C.3
  • 40
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
    • Chou KC. Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J Theor Biol 2011; 273: 236-247.
    • (2011) J Theor Biol , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 41
    • 0029157083 scopus 로고
    • Review: Prediction of protein structural classes
    • Chou KC, Zhang CT. Review: Prediction of protein structural classes. Crit Rev Biochem Mol Biol 1995; 30: 275-349.
    • (1995) Crit Rev Biochem Mol Biol , vol.30 , pp. 275-349
    • Chou, K.C.1    Zhang, C.T.2
  • 42
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • Chou KC, Shen HB. Recent progress in protein subcellular location prediction. Anal Biochem 2007; 370: 1-16.
    • (2007) Anal Biochem , vol.370 , pp. 1-16
    • Chou, K.C.1    Shen, H.B.2
  • 43
    • 33747197197 scopus 로고    scopus 로고
    • Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers
    • Chou KC, Shen HB. Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers. J Proteome Res 2006; 5: 1888-1897.
    • (2006) J Proteome Res , vol.5 , pp. 1888-1897
    • Chou, K.C.1    Shen, H.B.2
  • 44
    • 0005008115 scopus 로고    scopus 로고
    • Theoretical and Computational Methods in Genome Research
    • Altschul SF. Theoretical and Computational Methods in Genome Research, New York, 1997; p 1-14.
    • (1997) New York , pp. 1-14
    • Altschul, S.F.1
  • 45
    • 0001514262 scopus 로고
    • Statistics of local compblexity in amino acid sequences and sequence databases
    • Wootton JC, Federhen S. Statistics of local compblexity in amino acid sequences and sequence databases. Comput Chem 1993; 17: 149-163.
    • (1993) Comput Chem , vol.17 , pp. 149-163
    • Wootton, J.C.1    Federhen, S.2
  • 46
    • 33745008167 scopus 로고    scopus 로고
    • Identifying G-protein coupled receptors using weighted Levenshtein distance and the nearest neighbor method
    • Xu JH. Identifying G-protein coupled receptors using weighted Levenshtein distance and the nearest neighbor method. Genomics Proteomics Bioinform 2005; 3: 252-257.
    • (2005) Genomics Proteomics Bioinform , vol.3 , pp. 252-257
    • Xu, J.H.1
  • 47
    • 0029051959 scopus 로고
    • A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space
    • Chou KC. A novel approach to predicting protein structural classes in a (20-1)-D amino acid composition space. Proteins: Struct Funct & Genet 1995; 21: 319-344.
    • (1995) Proteins: Struct Funct & Genet , vol.21 , pp. 319-344
    • Chou, K.C.1
  • 48
    • 0036762915 scopus 로고    scopus 로고
    • A study on the correlation of G-proteincoupled receptor types with amino acid composition
    • Elrod DW, Chou K-C. A study on the correlation of G-proteincoupled receptor types with amino acid composition. Protein Eng 2002; 15: 713-715.
    • (2002) Protein Eng , vol.15 , pp. 713-715
    • Elrod, D.W.1    Chou, K.-C.2
  • 49
    • 23944438427 scopus 로고    scopus 로고
    • Prediction of G-Protein-Coupled receptor classes
    • Chou K-C. Prediction of G-Protein-Coupled receptor classes. J Proteome Res 2005; 1413-1418.
    • (2005) J Proteome Res , pp. 1413-1418
    • Chou, K.-C.1
  • 50
    • 0036767228 scopus 로고    scopus 로고
    • Bioinformatical analysis of G-Protein- Coupled receptors
    • Chou K-C, Elord DW. Bioinformatical analysis of G-Protein- Coupled receptors. J Proteome Res 2002; 429-433.
    • (2002) J Proteome Res , pp. 429-433
    • Chou, K.-C.1    Elord, D.W.2
  • 51
    • 51449123594 scopus 로고    scopus 로고
    • Classification of amine type G-protein coupled receptors with feature selection
    • Gao QB, Wu C, Ma XQ, Lu J, He J. Classification of amine type G-protein coupled receptors with feature selection. Protein Pept Lett 2008; 15: 834-842.
    • (2008) Protein Pept Lett , vol.15 , pp. 834-842
    • Gao, Q.B.1    Wu, C.2    Ma, X.Q.3    Lu, J.4    He, J.5
  • 52
    • 33750349025 scopus 로고    scopus 로고
    • Classification of G-protein coupled receptors at four levels
    • Gao QB, Wang ZZ. Classification of G-protein coupled receptors at four levels. Protein Eng Des Sel 2006; 19: 511-516.
    • (2006) Protein Eng Des Sel , vol.19 , pp. 511-516
    • Gao, Q.B.1    Wang, Z.Z.2
  • 53
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou KC. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr Proteomics 2009; 6: 262-274.
    • (2009) Curr Proteomics , vol.6 , pp. 262-274
    • Chou, K.C.1
  • 54
    • 64749096548 scopus 로고    scopus 로고
    • GPCR-CA: A cellular automation image approach for predicting G-protein-coupled receptor functional classes
    • Xiao X, Wang P, Chou K-C. GPCR-CA: A cellular automation image approach for predicting G-protein-coupled receptor functional classes. J Comput Chem 2009; 30: 1414-1423.
    • (2009) J Comput Chem , vol.30 , pp. 1414-1423
    • Xiao, X.1    Wang, P.2    Chou, K.-C.3
  • 55
    • 77956844839 scopus 로고    scopus 로고
    • Using adaptive K-nearest neighbor algorithm and cellular automata images to predicting G-protein-coupled receptor classes Interdisciplinary Sciences
    • Xiao X, Qiu W-R. Using adaptive K-nearest neighbor algorithm and cellular automata images to predicting G-protein-coupled receptor classes Interdisciplinary Sciences: Comput Life Sci 2010; 2: 180-184.
    • (2010) Comput Life Sci , vol.2 , pp. 180-184
    • Xiao, X.1    Qiu, W.-R.2
  • 57
    • 15244357858 scopus 로고    scopus 로고
    • Using cellular automata to generate image representation for biological sequences
    • Xiao X, Shao S, Ding Y, Huang Z, Chen X, Chou KC. Using cellular automata to generate image representation for biological sequences. Amino Acids 2005; 28: 29-35.
    • (2005) Amino Acids , vol.28 , pp. 29-35
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Chen, X.5    Chou, K.C.6
  • 58
    • 64749096548 scopus 로고    scopus 로고
    • GPCR-CA: A cellular automaton image approach for predicting G-Protein-Coupled receptor functional classes
    • Xiao X, Wang P, Chou KC. GPCR-CA: A cellular automaton image approach for predicting G-Protein-Coupled receptor functional classes. J Comput Chem 2009; 30: 1414-1423.
    • (2009) J Comput Chem , vol.30 , pp. 1414-1423
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 59
    • 77955283880 scopus 로고    scopus 로고
    • An improved classification of Gprotein-coupled receptors using sequence-derived features
    • Peng ZL, Yang JY, Chen X. An improved classification of Gprotein-coupled receptors using sequence-derived features. BMC Bioinformatics 2010; 11: 420.
    • (2010) BMC Bioinformatics , vol.11 , pp. 420
    • Peng, Z.L.1    Yang, J.Y.2    Chen, X.3
  • 60
    • 37549004451 scopus 로고    scopus 로고
    • PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition
    • Shen HB, Chou KC. PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition. Anal Biochem 2008; 373: 386-388.
    • (2008) Anal Biochem , vol.373 , pp. 386-388
    • Shen, H.B.1    Chou, K.C.2
  • 61
    • 65649105512 scopus 로고    scopus 로고
    • Prediction of G-proteincoupled receptor classes based on the concept of Chou's pseudo amino acid composition: An approach from discrete wavelet
    • Qiu J-D, Huang J-H, Liang R-P, Lu X-Q. Prediction of G-proteincoupled receptor classes based on the concept of Chou's pseudo amino acid composition: An approach from discrete wavelet. Anal Biochem 2009; 68-73.
    • (2009) Anal Biochem , pp. 68-73
    • Qiu, J.-D.1    Huang, J.-H.2    Liang, R.-P.3    Lu, X.-Q.4
  • 62
    • 79951606205 scopus 로고    scopus 로고
    • GPCR-2L: Predicting G proteincoupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
    • Xiao X, Wang P, Chou KC. GPCR-2L: predicting G proteincoupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions. Mol BioSyst 2011; 7: 911-919.
    • (2011) Mol BioSyst , vol.7 , pp. 911-919
    • Xiao, X.1    Wang, P.2    Chou, K.C.3
  • 63
    • 0037195776 scopus 로고    scopus 로고
    • Using functional domain composition and support vector machines for prediction of protein subcellular location
    • Chou KC, Cai YD. Using functional domain composition and support vector machines for prediction of protein subcellular location. J Biol Chem 2002; 27: 45765-45769.
    • (2002) J Biol Chem , vol.27 , pp. 45765-45769
    • Chou, K.C.1    Cai, Y.D.2
  • 64
    • 33745798783 scopus 로고    scopus 로고
    • Functional classification of G-Protein Coupled Receptors, based on their specific ligand coupling patterns
    • Bakir B, Sezerman OU. Functional classification of G-Protein Coupled Receptors, based on their specific ligand coupling patterns. Lect Notes Comput Sci 2006; 3907: 1-12.
    • (2006) Lect Notes Comput Sci , vol.3907 , pp. 1-12
    • Bakir, B.1    Sezerman, O.U.2
  • 65
    • 25144470285 scopus 로고    scopus 로고
    • Low-frequency Fourier spectrum for predicting membrane protein types
    • Liu H, Wang M, Chou KC. Low-frequency Fourier spectrum for predicting membrane protein types. Biochem Biophys Res Commun 2005; 336: 737-739.
    • (2005) Biochem Biophys Res Commun , vol.336 , pp. 737-739
    • Liu, H.1    Wang, M.2    Chou, K.C.3
  • 66
    • 0005964251 scopus 로고
    • The biological functions of low-frequency phonons
    • Chou KC, Chen NY. The biological functions of low-frequency phonons. Scientia Sinica 1977; 20: 447-457.
    • (1977) Scientia Sinica , vol.20 , pp. 447-457
    • Chou, K.C.1    Chen, N.Y.2
  • 67
    • 0020730848 scopus 로고
    • Low-frequency vibrations of helical structures in protein molecules
    • Chou KC. Low-frequency vibrations of helical structures in protein molecules. Biochem J 1983; 209: 573-580.
    • (1983) Biochem J , vol.209 , pp. 573-580
    • Chou, K.C.1
  • 68
    • 0021245237 scopus 로고
    • The biological functions of low-frequency phonons: 3. Helical structures and microenvironment
    • Chou KC. The biological functions of low-frequency phonons: 3. Helical structures and microenvironment. Biophy J 1984; 45: 881-890.
    • (1984) Biophy J , vol.45 , pp. 881-890
    • Chou, K.C.1
  • 69
    • 0021454907 scopus 로고
    • Low-frequency vibration of DNA molecules
    • Chou KC. Low-frequency vibration of DNA molecules. Biochem J 1984; 221: 27-31.
    • (1984) Biochem J , vol.221 , pp. 27-31
    • Chou, K.C.1
  • 70
    • 0022106012 scopus 로고
    • Low-frequency motions in protein molecules: Beta-sheet and beta-barrel
    • Chou KC. Low-frequency motions in protein molecules: beta-sheet and beta-barrel. Biophy J 1985; 48: 289-297.
    • (1985) Biophy J , vol.48 , pp. 289-297
    • Chou, K.C.1
  • 71
    • 0023282450 scopus 로고
    • The biological functions of low-frequency phonons: 6. A possible dynamic mechanism of allosteric transition in antibody molecules
    • Chou KC. The biological functions of low-frequency phonons: 6. A possible dynamic mechanism of allosteric transition in antibody molecules. Biopolymers 1987; 26: 285-295.
    • (1987) Biopolymers , vol.26 , pp. 285-295
    • Chou, K.C.1
  • 72
    • 0024005728 scopus 로고
    • Review: Low-frequency collective motion in biomacromolecules and its biological functions
    • Chou KC. Review: Low-frequency collective motion in biomacromolecules and its biological functions. Biophy Chem 1988; 30: 3-48.
    • (1988) Biophy Chem , vol.30 , pp. 3-48
    • Chou, K.C.1
  • 73
    • 0024678051 scopus 로고
    • Low-frequency resonance and cooperativity of hemoglobin
    • Chou KC. Low-frequency resonance and cooperativity of hemoglobin. Trends Biochem Sci 1989; 14: 212.
    • (1989) Trends Biochem Sci , vol.14 , pp. 212
    • Chou, K.C.1
  • 74
    • 0022103944 scopus 로고
    • The biological functions of low-frequency phonons: 5. A phenomenological theory
    • Chou KC, Kiang YS. The biological functions of low-frequency phonons: 5. A phenomenological theory. Biophy Chem 1985; 22: 219-235.
    • (1985) Biophy Chem , vol.22 , pp. 219-235
    • Chou, K.C.1    Kiang, Y.S.2
  • 75
    • 85200275046 scopus 로고    scopus 로고
    • Bellows Falls, Vermont USA January 15, 2009
    • Vermont C. In http://www.sover.net/~bell/newFrontierpics.htm Bellows Falls, Vermont USA January 15, 2009.
    • Vermont, C.1
  • 76
    • 67650029561 scopus 로고    scopus 로고
    • Extrinsic electromagnetic fields, low frequency (phonon) vibrations, and control of cell function: A non-linear resonance system
    • Gordon G. Extrinsic electromagnetic fields, low frequency (phonon) vibrations, and control of cell function: a non-linear resonance system. J Biomed Sci Eng (JBiSE) 2008; 1: 152-156 (open accessible at http://www.srpublishing.org/journal/jbise/).
    • (2008) J Biomed Sci Eng (JBiSE) , vol.1 , pp. 152-156
    • Gordon, G.1
  • 79
    • 33745102264 scopus 로고    scopus 로고
    • Classifying G protein-coupled receptors and nuclear receptors on the basis of protein power spectrum from fast Fourier transform
    • Guo YZ, Li M, Lu M, Wen Z, Wang K, Li G, Wu J. Classifying G protein-coupled receptors and nuclear receptors on the basis of protein power spectrum from fast Fourier transform. Amino Acids 2006; 397-402.
    • (2006) Amino Acids , pp. 397-402
    • Guo, Y.Z.1    Li, M.2    Lu, M.3    Wen, Z.4    Wang, K.5    Li, G.6    Wu, J.7
  • 80
    • 3242892058 scopus 로고    scopus 로고
    • GPCRpred: An SVM-based method for prediction of families and subfamilies of G-protein coupled receptors
    • Bhasin M, Raghava GP. GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors. Nucleic Acids Res 2004, 32: W383-389.
    • (2004) Nucleic Acids Res , vol.32 , pp. 383-389
    • Bhasin, M.1    Raghava, G.P.2
  • 81
    • 23144467078 scopus 로고    scopus 로고
    • GPCRsclass: A web tool for the classification of amine type of G-protein-coupled receptors
    • Bhasin M, Raghava GPS. GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors. Nucleic Acids Res 2005; 33: W143-W147.
    • (2005) Nucleic Acids Res , vol.33
    • Bhasin, M.1    Raghava, G.P.S.2
  • 82
    • 77954864967 scopus 로고    scopus 로고
    • Classification of G-protein coupled receptors based on support vector machine with maximum relevance minimum redundancy and genetic algorithm
    • Li ZC, Zhou XA, Dai Z, Zou XY. Classification of G-protein coupled receptors based on support vector machine with maximum relevance minimum redundancy and genetic algorithm. BMC Bioinformatics 2010; 11: 325.
    • (2010) BMC Bioinformatics , vol.11 , pp. 325
    • Li, Z.C.1    Zhou, X.A.2    Dai, Z.3    Zou, X.Y.4
  • 83
    • 33745005975 scopus 로고    scopus 로고
    • Classifying G-protein coupled receptors with support vector machine
    • Huang Y, Li YD. Classifying G-protein coupled receptors with support vector machine. Advances in Neural Networks - Isnn 2004; Pt 2, 3174: 448-452.
    • (2004) Advances In Neural Networks - Isnn , vol.2 , Issue.3174 , pp. 448-452
    • Huang, Y.1    Li, Y.D.2
  • 84
    • 33749579231 scopus 로고    scopus 로고
    • Classifying Gprotein coupled receptors with hydropathy blocks and support vector machines
    • Zhao XM, Huang DS, Zhang SW, Cheung YM. Classifying Gprotein coupled receptors with hydropathy blocks and support vector machines. Comput Intel Bioinform Pt 3 Proc 2006; 4115; 593-602.
    • (2006) Comput Intel Bioinform Pt 3 Proc , vol.4115 , pp. 593-602
    • Zhao, X.M.1    Huang, D.S.2    Zhang, S.W.3    Cheung, Y.M.4
  • 85
    • 0036166451 scopus 로고    scopus 로고
    • Classifying G-protein coupled receptors with support vector machines
    • Karchin R, Karplus K, Haussler D. Classifying G-protein coupled receptors with support vector machines. Bioinformatics 2002; 18: 147-159.
    • (2002) Bioinformatics , vol.18 , pp. 147-159
    • Karchin, R.1    Karplus, K.2    Haussler, D.3
  • 86
    • 78650746655 scopus 로고    scopus 로고
    • Cell-PLoc 2.0: An improved package of webservers for predicting subcellular localization of proteins in various organisms
    • Chou KC, Shen HB. Cell-PLoc 2.0: An improved package of webservers for predicting subcellular localization of proteins in various organisms. Nat Sci 2010; 2: 1090-1103 (openly accessible at http://www.scirp.org/journal/NS/).
    • (2010) Nat Sci , vol.2 , pp. 1090-1103
    • Chou, K.C.1    Shen, H.B.2
  • 88
    • 0028121983 scopus 로고
    • Predicting protein folding types by distance functions that make allowances for amino acid interactions
    • Chou KC, Zhang CT. Predicting protein folding types by distance functions that make allowances for amino acid interactions. J Biol Chem 1994; 269: 22014-22020.
    • (1994) J Biol Chem , vol.269 , pp. 22014-22020
    • Chou, K.C.1    Zhang, C.T.2


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