Digital coding for amino acid based on Cellular Automata

Conference Proceedings - IEEE International Conference on Systems, Man and Cybernetics

Volumn 5, Issue , 2004, Pages 4593-4598

  Xiao, Xuan ^a,b   Shao, Shihuang ^a   Ding, Yongsheng ^a   Chen, Xiaojing ^a  

^a DONGHUA UNIVERSITY   (China)

^b JINGDEZHEN CERAMIC INSTITUTE   (China)

Author keywords

Amino acid; Cellular automata; Digital coding; Genetic information

Indexed keywords

CELLULAR AUTOMATA; DIGITAL CODING; GENETIC INFORMATION; MOLECULAR RECOGNITION THEORY;

AMINO ACIDS; CORRELATION THEORY; DNA; DYNAMIC MECHANICAL ANALYSIS; GENES; GENETIC ALGORITHMS; IMAGE CODING; INFORMATION ANALYSIS; PROTEINS; RNA;

GENETIC ENGINEERING;

EID: 15744367542     PISSN: 1062922X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICSMC.2004.1401256     Document Type: Conference Paper

References (20)

1. J. C. Venter., H. O. Smith and L. Hood, "A new strategy for genome sequencing", Nature, Vol. 381, pp. 364-366, 1996
2. J. C. Venter et al. "Shotgun sequencing of the human genome", Science, Vol. 280, pp. 1540-1542, 1998.
3. J. W. Meinke, J. M. Cherry, C. Dean, S. D. Rounsley and M. Koornneef, "Arabidopsis thaliana: A moder plant for genome analysis", Science, Vol. 282, pp. 662-682, 1998.
4. P. Cristea, "Independent component analysis for genetic signals", SPIE Conference BIOS 2001-international Biomedical optics Symposium, San Jose, USA, pp. 20-26 January 2001.
5. Y. X. Pan, Z. Z. Zhang, Z. M. Quo, G. Y. Feng, Z. D. Huang and L. He, "Application of pseudo amino acid composition for predicting protein subcellular location: Stochastic signal processing approach", Journal of Protein Chemistry, Vol. 22,No. 4, pp.395-402, 2003.
6. W. H. Sofer, "Predicting secondary structure of proteins using genetic algorithms". http://waksman. Rutgers.Edu/Waks/Sofer/sofer.Html.
7. S. Nikola, "On the genetic origin of complementary protein coding", Croatica Chemica acta, Vol. 71, No 3, pp. 573-589, 1998.
8. J. C. Biro, B. benyo, C. Sansom, A. Szlavecz, et al. "A common periodic table of codons and amino acids", Biochemical and Biophysical research communications, Vol. 306, pp. 1408-1415, 2003.
9. S. K. Lin, "The nature of the chemical process. 1. symmetry evolution-revised information theory, similarity principle and ugly symmetry", Int. J. Mol. Sci., Vol. 2, pp. 10-39, 2001.
10. st century; E. keinan, I. Schechter, Eds, Wiley-VCH: Weinheim, pp. 89-101, 2001.
11. E. Blalock, "Genetic origins of protein shape and interaction rules", Nature Medicine, Vol. 1, pp. 876-878, 1995
12. L. Baranyi, W. Campbell, K. Ohishima, S. Fujimoto, M. Boros and H. Okada, "The antisense homology box: A new motif within proteins that encodes biologically active peptides", Nature medicine, Vol. 1, pp. 1894-901, 1995
13. N. Stambuk, "On the optimization of complementary protein coding", in: S. Ohno, K. Aoki, M. Usui and E. Uchio(Eds.), Uveitits Today, Elsevier, Amsterdam, pp. 315-318, 1998.
14. J. E. Blalock and K. L. Bost, "Binding of peptides that are specified by complementary RNAs", Biochem. J., Vol. 234, pp. 679-683, 1986.
15. G. Fasina, P. P. Roller, A. D. Olson, S. S. Thorgeirsson and J. G. Omichinski, "Recognition properties of peptides hydropathically complementary to residues 356-375 of the c-raf protein", J. Biological Chemistiy, Vol. 264, No. 19, pp. 11252-11257, 1989.
16. S. C. Li and J. Xu, "Digital coding for RNA based on DNA computing", Chinese Journal of Computer Engineering and Application, No. 5, pp. 45-47, 2003
17. S. Wolfram, "Cellular automation fluid: Basic theory". J. Stat. Phys., Vol. 45, pp. 471, 1986.
18. R. M. Z. Dos Santos and S. Coutinho, "Dynamic of HIV infection: A cellular automata approach", Physical Review Letters, Vol. 87, pp. 168102, 2001.
19. M. Randic, M. Vracko, A. Nandy and S. C. Basak, "On 3-D graphical representation of DNA primary sequences and their numerical characterization", J. Chem. Inf. Comput. Sci., Vol. 40, pp. 1235-1244, 2000.
20. Y. Liu, X. Guo, J. Xu, L. Pan and S. Wang, "Some notes on 2-D graphical representation of DNA sequence", J. Chem. Inf. Comput. Sci., Vol. 42, pp. 529-533, 2002.