-
1
-
-
77954238686
-
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
-
10.1101/gr.104695.109 20418490
-
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome. Shoemaker R, Deng J, Wang W, Zhang K, Genome Res 2010 20 883 889 10.1101/gr.104695.109 20418490
-
(2010)
Genome Res
, vol.20
, pp. 883-889
-
-
Shoemaker, R.1
Deng, J.2
Wang, W.3
Zhang, K.4
-
2
-
-
78651276230
-
Allele-specific DNA methylation: Beyond imprinting
-
10.1093/hmg/ddq376 20855472
-
Allele-specific DNA methylation: beyond imprinting. Tycko B, Hum Mol Genet 2010 19 210 R220 10.1093/hmg/ddq376 20855472
-
(2010)
Hum Mol Genet
, vol.19
-
-
Tycko, B.1
-
3
-
-
77950854479
-
Heritable individual-specific and allele-specific chromatin signatures in humans
-
10.1126/science.1184655 20299549
-
Heritable individual-specific and allele-specific chromatin signatures in humans. McDaniell R, Lee B-K, Song L, Liu Z, Boyle AP, Erdos MR, Scott LJ, Morken MA, Kucera KS, Battenhouse A, Keefe D, Collins FS, Willard HF, Lieb JD, Furey TS, Crawford GE, Iyer VR, Birney E, Science 2010 328 235 239 10.1126/science.1184655 20299549
-
(2010)
Science
, vol.328
, pp. 235-239
-
-
McDaniell, R.1
Lee, B.-K.2
Song, L.3
Liu, Z.4
Boyle, A.P.5
Erdos, M.R.6
Scott, L.J.7
Morken, M.A.8
Kucera, K.S.9
Battenhouse, A.10
Keefe, D.11
Collins, F.S.12
Willard, H.F.13
Lieb, J.D.14
Furey, T.S.15
Crawford, G.E.16
Iyer, V.R.17
Birney, E.18
-
4
-
-
34249725088
-
Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome
-
10.1371/journal.pgen.0030081 17511522
-
Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome. Kadota M, Yang HH, Hu N, Wang C, Hu Y, Taylor PR, Buetow KH, Lee MP, PLoS Genet 2007 3 81 10.1371/journal.pgen. 0030081 17511522
-
(2007)
PLoS Genet
, vol.3
, pp. 581
-
-
Kadota, M.1
Yang, H.H.2
Hu, N.3
Wang, C.4
Hu, Y.5
Taylor, P.R.6
Buetow, K.H.7
Lee, M.P.8
-
5
-
-
55549123549
-
Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification
-
10.1101/gr.067587.108 18849526
-
Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification. Wen B, Wu H, Bjornsson H, Green RD, Irizarry R, Feinberg AP, Genome Res 2008 18 1806 1813 10.1101/gr.067587.108 18849526
-
(2008)
Genome Res
, vol.18
, pp. 1806-1813
-
-
Wen, B.1
Wu, H.2
Bjornsson, H.3
Green, R.D.4
Irizarry, R.5
Feinberg, A.P.6
-
6
-
-
70350580560
-
Changes in allele-specific association of histone modifications at the imprinting control regions during mouse preimplantation development
-
10.1002/dvg.20541 19530139
-
Changes in allele-specific association of histone modifications at the imprinting control regions during mouse preimplantation development. Kim J-M, Ogura A, Genesis 2009 47 611 616 10.1002/dvg.20541 19530139
-
(2009)
Genesis
, vol.47
, pp. 611-616
-
-
Kim, J.-M.1
Ogura, A.2
-
7
-
-
77952602314
-
Allele-specific H3K79 Di- versus trimethylation distinguishes opposite parental alleles at imprinted regions
-
10.1128/MCB.01537-09 20351169
-
Allele-specific H3K79 Di- versus trimethylation distinguishes opposite parental alleles at imprinted regions. Singh P, Han L, Rivas GE, Lee D-H, Nicholson TB, Larson GP, Chen T, Szabá PE, Mol Cell Biol 2010 30 2693 2707 10.1128/MCB.01537-09 20351169
-
(2010)
Mol Cell Biol
, vol.30
, pp. 2693-2707
-
-
Singh, P.1
Han, L.2
Rivas, G.E.3
Lee, D.-H.4
Nicholson, T.B.5
Larson, G.P.6
Chen, T.7
Szabá, P.E.8
-
8
-
-
78650475567
-
Coordinated allele-specific histone acetylation at the differentially methylated regions of imprinted genes
-
10.1093/nar/gkq680 20693536
-
Coordinated allele-specific histone acetylation at the differentially methylated regions of imprinted genes. Singh P, Cho J, Tsai SY, Rivas GE, Larson GP, Szabá PE, Nucleic Acids Res 2010 38 7974 7990 10.1093/nar/gkq680 20693536
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7974-7990
-
-
Singh, P.1
Cho, J.2
Tsai, S.Y.3
Rivas, G.E.4
Larson, G.P.5
Szabá, P.E.6
-
9
-
-
0037011058
-
Allele-specific histone lysine methylation marks regulatory regions at imprinted mouse genes
-
10.1093/emboj/cdf655 12456662
-
Allele-specific histone lysine methylation marks regulatory regions at imprinted mouse genes. Fournier C, Goto Y, Ballestar E, Delaval K, Hever AM, Esteller M, Feil R, EMBO J 2002 21 6560 6570 10.1093/emboj/cdf655 12456662
-
(2002)
EMBO J
, vol.21
, pp. 6560-6570
-
-
Fournier, C.1
Goto, Y.2
Ballestar, E.3
Delaval, K.4
Hever, A.M.5
Esteller, M.6
Feil, R.7
-
10
-
-
79953128580
-
Chromosome-wide analysis of parental allele-specific chromatin and DNA methylation
-
10.1128/MCB.00961-10 21321082
-
Chromosome-wide analysis of parental allele-specific chromatin and DNA methylation. Singh P, Wu X, Lee D-H, Li AX, Rauch TA, Pfeifer GP, Mann JR, Szabá PE, Mol Cell Biol 2011 31 1757 1770 10.1128/MCB.00961-10 21321082
-
(2011)
Mol Cell Biol
, vol.31
, pp. 1757-1770
-
-
Singh, P.1
Wu, X.2
Lee, D.-H.3
Li, A.X.4
Rauch, T.A.5
Pfeifer, G.P.6
Mann, J.R.7
Szabá, P.E.8
-
11
-
-
78649506925
-
Integrated genetic and epigenetic analysis identifies haplotype-specific methylation in the FTO type 2 diabetes and obesity susceptibility locus
-
10.1371/journal.pone.0014040 21124985
-
Integrated genetic and epigenetic analysis identifies haplotype-specific methylation in the FTO type 2 diabetes and obesity susceptibility locus. Bell CG, Finer S, Lindgren CM, Wilson GA, Rakyan VK, Teschendorff AE, Akan P, Stupka E, Down TA, Prokopenko I, Morison IM, Mill J, Pidsley R, Deloukas P, Frayling TM, Hattersley AT, McCarthy MI, Beck S, Hitman GA, PLoS One 2010 5 14040 10.1371/journal.pone.0014040 21124985
-
(2010)
PLoS One
, vol.5
, pp. 514040
-
-
Bell, C.G.1
Finer, S.2
Lindgren, C.M.3
Wilson, G.A.4
Rakyan, V.K.5
Teschendorff, A.E.6
Akan, P.7
Stupka, E.8
Down, T.A.9
Prokopenko, I.10
Morison, I.M.11
Mill, J.12
Pidsley, R.13
Deloukas, P.14
Frayling, T.M.15
Hattersley, A.T.16
McCarthy, M.I.17
Beck, S.18
Hitman, G.A.19
-
12
-
-
77649086970
-
A map of open chromatin in human pancreatic islets
-
10.1038/ng.530 20118932
-
A map of open chromatin in human pancreatic islets. Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, Fogarty MP, Panhuis TM, Mieczkowski P, Secchi A, Bosco D, Berney T, Montanya E, Mohlke KL, Lieb JD, Ferrer J, Nat Genet 2010 42 255 259 10.1038/ng.530 20118932
-
(2010)
Nat Genet
, vol.42
, pp. 255-259
-
-
Gaulton, K.J.1
Nammo, T.2
Pasquali, L.3
Simon, J.M.4
Giresi, P.G.5
Fogarty, M.P.6
Panhuis, T.M.7
Mieczkowski, P.8
Secchi, A.9
Bosco, D.10
Berney, T.11
Montanya, E.12
Mohlke, K.L.13
Lieb, J.D.14
Ferrer, J.15
-
13
-
-
69449101386
-
Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease
-
10.1016/j.ajhg.2009.08.007 19732864
-
Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease. Verlaan DJ, Berlivet S, Hunninghake GM, Madore A-M, Larivière M, Moussette S, Grundberg E, Kwan T, Ouimet M, Ge B, Hoberman R, Swiatek M, Dias J, Lam KCL, Koka V, Harmsen E, Soto-Quiros M, Avila L, Celedán JC, Weiss ST, Dewar K, Sinnett D, Laprise C, Raby BA, Pastinen T, Naumova AK, Am J Hum Genet 2009 85 377 393 10.1016/j.ajhg.2009.08.007 19732864
-
(2009)
Am J Hum Genet
, vol.85
, pp. 377-393
-
-
Verlaan, D.J.1
Berlivet, S.2
Hunninghake, G.M.3
Madore, A.-M.4
Larivière, M.5
Moussette, S.6
Grundberg, E.7
Kwan, T.8
Ouimet, M.9
Ge, B.10
Hoberman, R.11
Swiatek, M.12
Dias, J.13
Lam, K.C.L.14
Koka, V.15
Harmsen, E.16
Soto-Quiros, M.17
Avila, L.18
Celedán, J.C.19
Weiss, S.T.20
Dewar, K.21
Sinnett, D.22
Laprise, C.23
Raby, B.A.24
Pastinen, T.25
Naumova, A.K.26
more..
-
14
-
-
79952534189
-
Regulation of chromatin by histone modifications
-
10.1038/cr.2011.22 21321607
-
Regulation of chromatin by histone modifications. Bannister AJ, Kouzarides T, Cell Res 2011 21 381 395 10.1038/cr.2011.22 21321607
-
(2011)
Cell Res
, vol.21
, pp. 381-395
-
-
Bannister, A.J.1
Kouzarides, T.2
-
15
-
-
0035208597
-
Parent-specific complementary patterns of histone H3 lysine 9 and H3 lysine 4 methylation at the Prader-Willi syndrome imprinting center
-
10.1086/324469 11592036
-
Parent-specific complementary patterns of histone H3 lysine 9 and H3 lysine 4 methylation at the Prader-Willi syndrome imprinting center. Xin Z, Allis CD, Wagstaff J, Am J Hum Genet 2001 69 1389 1394 10.1086/324469 11592036
-
(2001)
Am J Hum Genet
, vol.69
, pp. 1389-1394
-
-
Xin, Z.1
Allis, C.D.2
Wagstaff, J.3
-
16
-
-
79960556965
-
Epigenome-wide association studies for common human diseases
-
10.1038/nrg3000 21747404
-
Epigenome-wide association studies for common human diseases. Rakyan VK, Down TA, Balding DJ, Beck S, Nat Rev Genet 2011 12 529 541 10.1038/nrg3000 21747404
-
(2011)
Nat Rev Genet
, vol.12
, pp. 529-541
-
-
Rakyan, V.K.1
Down, T.A.2
Balding, D.J.3
Beck, S.4
-
17
-
-
79952198174
-
Allele-specific and heritable chromatin signatures in humans
-
10.1093/hmg/ddq404 20846943
-
Allele-specific and heritable chromatin signatures in humans. Birney E, Lieb JD, Furey TS, Crawford GE, Iyer VR, Hum Mol Genet 2010 19 204 R209 10.1093/hmg/ddq404 20846943
-
(2010)
Hum Mol Genet
, vol.19
-
-
Birney, E.1
Lieb, J.D.2
Furey, T.S.3
Crawford, G.E.4
Iyer, V.R.5
-
18
-
-
72449122779
-
Parental origin of sequence variants associated with complex diseases
-
10.1038/nature08625 20016592
-
Parental origin of sequence variants associated with complex diseases. Kong A, Steinthorsdottir V, Masson G, Thorleifsson G, Sulem P, Besenbacher S, Jonasdottir A, Sigurdsson A, Kristinsson KT, Jonasdottir A, Frigge ML, Gylfason A, Olason PI, Gudjonsson SA, Sverrisson S, Stacey SN, Sigurgeirsson B, Benediktsdottir KR, Sigurdsson H, Jonsson T, Benediktsson R, Olafsson JH, Johannsson OT, Hreidarsson AB, Sigurdsson G, Ferguson-Smith AC, Gudbjartsson DF, Thorsteinsdottir U, Stefansson K, Nature 2009 462 868 874 10.1038/nature08625 20016592
-
(2009)
Nature
, vol.462
, pp. 868-874
-
-
Kong, A.1
Steinthorsdottir, V.2
Masson, G.3
Thorleifsson, G.4
Sulem, P.5
Besenbacher, S.6
Jonasdottir, A.7
Sigurdsson, A.8
Kristinsson, K.T.9
Jonasdottir, A.10
Frigge, M.L.11
Gylfason, A.12
Olason, P.I.13
Gudjonsson, S.A.14
Sverrisson, S.15
Stacey, S.N.16
Sigurgeirsson, B.17
Benediktsdottir, K.R.18
Sigurdsson, H.19
Jonsson, T.20
Benediktsson, R.21
Olafsson, J.H.22
Johannsson, O.T.23
Hreidarsson, A.B.24
Sigurdsson, G.25
Ferguson-Smith, A.C.26
Gudbjartsson, D.F.27
Thorsteinsdottir, U.28
Stefansson, K.29
more..
-
19
-
-
33748323156
-
A new chromosome 17q21.31 microdeletion syndrome associated with a common inversion polymorphism
-
10.1038/ng1853 16906164
-
A new chromosome 17q21.31 microdeletion syndrome associated with a common inversion polymorphism. Koolen DA, Vissers LELM, Pfundt R, De Leeuw N, Knight SJL, Regan R, Kooy RF, Reyniers E, Romano C, Fichera M, Schinzel A, Baumer A, Anderlid B-M, Schoumans J, Knoers NV, van Kessel AG, Sistermans EA, Veltman JA, Brunner HG, de Vries BBA, Nat Genet 2006 38 999 1001 10.1038/ng1853 16906164
-
(2006)
Nat Genet
, vol.38
, pp. 999-1001
-
-
Koolen, D.A.1
Vissers, L.2
Pfundt, R.3
De Leeuw, N.4
Knight, S.J.L.5
Regan, R.6
Kooy, R.F.7
Reyniers, E.8
Romano, C.9
Fichera, M.10
Schinzel, A.11
Baumer, A.12
Anderlid, B.-M.13
Schoumans, J.14
Knoers, N.V.15
Van Kessel, A.G.16
Sistermans, E.A.17
Veltman, J.A.18
Brunner, H.G.19
De Vries, B.B.A.20
more..
-
20
-
-
74249090979
-
Lack of population diversity in commonly used human embryonic stem-cell lines
-
10.1056/NEJMc0910371 20018958
-
Lack of population diversity in commonly used human embryonic stem-cell lines. Mosher JT, Pemberton TJ, Harter K, Wang C, Buzbas EO, Dvorak P, Simán C, Morrison SJ, Rosenberg NA, N Engl J Med 2010 362 183 185 10.1056/NEJMc0910371 20018958
-
(2010)
N Engl J Med
, vol.362
, pp. 183-185
-
-
Mosher, J.T.1
Pemberton, T.J.2
Harter, K.3
Wang, C.4
Buzbas, E.O.5
Dvorak, P.6
Simán, C.7
Morrison, S.J.8
Rosenberg, N.A.9
-
21
-
-
84975742565
-
The 1000 Genomes Project Consortium: A map of human genome variation from population-scale sequencing
-
10.1038/nature09534 20981092
-
The 1000 Genomes Project Consortium: a map of human genome variation from population-scale sequencing. Nature 2010 467 1061 1073 10.1038/nature09534 20981092
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
22
-
-
77956331627
-
Integrating common and rare genetic variation in diverse human populations
-
10.1038/nature09298 20811451
-
Integrating common and rare genetic variation in diverse human populations. Altshuler DM, Gibbs RA, Peltonen L, Altshuler DM, Gibbs RA, Peltonen L, Dermitzakis E, Schaffner SF, Yu F, Peltonen L, Dermitzakis E, Bonnen PE, Altshuler DM, Gibbs RA, de Bakker PIW, Deloukas P, Gabriel SB, Gwilliam R, Hunt S, Inouye M, Jia X, Palotie A, Parkin M, Whittaker P, Yu F, Chang K, Hawes A, Lewis LR, Ren Y, Wheeler D, Gibbs RA, Muzny DM, Barnes C, Darvishi K, Hurles M, Korn JM, Kristiansson K, Lee C, McCarrol SA, Nemesh J, Dermitzakis E, Keinan A, Montgomery SB, Pollack S, Price AL, Soranzo N, Bonnen PE, Gibbs RA, Gonzaga-Jauregui C, Keinan A, Price AL, Yu F, Anttila V, Brodeur W, Daly MJ, Leslie S, McVean G, Moutsianas L, Nguyen H, Schaffner SF, Zhang Q, Ghori MJR, McGinnis R, McLaren W, Pollack S, Price AL, Schaffner SF, Takeuchi F, Grossman SR, Shlyakhter I, Hostetter EB, Sabeti PC, Adebamowo CA, Foster MW, Gordon DR, Licinio J, Manca MC, Marshall PA, Matsuda I, Ngare D, Wang VO, Reddy D, Rotimi CN, Royal CD, Sharp RR, Zeng C, Brooks LD, McEwen JE, Nature 2010 467 52 58 10.1038/nature09298 20811451
-
(2010)
Nature
, vol.467
, pp. 52-58
-
-
Altshuler, D.M.1
Gibbs, R.A.2
Peltonen, L.3
Altshuler, D.M.4
Gibbs, R.A.5
Peltonen, L.6
Dermitzakis, E.7
Schaffner, S.F.8
Yu, F.9
Peltonen, L.10
Dermitzakis, E.11
Bonnen, P.E.12
Altshuler, D.M.13
Gibbs, R.A.14
De Bakker, P.I.W.15
Deloukas, P.16
Gabriel, S.B.17
Gwilliam, R.18
Hunt, S.19
Inouye, M.20
Jia, X.21
Palotie, A.22
Parkin, M.23
Whittaker, P.24
Yu, F.25
Chang, K.26
Hawes, A.27
Lewis, L.R.28
Ren, Y.29
Wheeler, D.30
Gibbs, R.A.31
Muzny, D.M.32
Barnes, C.33
Darvishi, K.34
Hurles, M.35
Korn, J.M.36
Kristiansson, K.37
Lee, C.38
McCarrol, S.A.39
Nemesh, J.40
Dermitzakis, E.41
Keinan, A.42
Montgomery, S.B.43
Pollack, S.44
Price, A.L.45
Soranzo, N.46
Bonnen, P.E.47
Gibbs, R.A.48
Gonzaga-Jauregui, C.49
Keinan, A.50
Price, A.L.51
Yu, F.52
Anttila, V.53
Brodeur, W.54
Daly, M.J.55
Leslie, S.56
McVean, G.57
Moutsianas, L.58
Nguyen, H.59
Schaffner, S.F.60
Zhang, Q.61
Ghori, M.J.R.62
McGinnis, R.63
McLaren, W.64
Pollack, S.65
Price, A.L.66
Schaffner, S.F.67
Takeuchi, F.68
Grossman, S.R.69
Shlyakhter, I.70
Hostetter, E.B.71
Sabeti, P.C.72
Adebamowo, C.A.73
Foster, M.W.74
Gordon, D.R.75
Licinio, J.76
Manca, M.C.77
Marshall, P.A.78
Matsuda, I.79
Ngare, D.80
Wang, V.O.81
Reddy, D.82
Rotimi, C.N.83
Royal, C.D.84
Sharp, R.R.85
Zeng, C.86
Brooks, L.D.87
McEwen, J.E.88
more..
-
23
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
10.1371/journal.pgen.1000529 19543373
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. Howie BN, Donnelly P, Marchini J, PLoS Genet 2009 5 1000529 10.1371/journal.pgen.1000529 19543373
-
(2009)
PLoS Genet
, vol.5
, pp. 51000529
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
24
-
-
75549091651
-
ENCODE whole-genome data in the UCSC Genome Browser
-
19920125
-
ENCODE whole-genome data in the UCSC Genome Browser. Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ, Nucleic Acids Res 2009 38 620 D625 19920125
-
(2009)
Nucleic Acids Res
, vol.38
-
-
Rosenbloom, K.R.1
Dreszer, T.R.2
Pheasant, M.3
Barber, G.P.4
Meyer, L.R.5
Pohl, A.6
Raney, B.J.7
Wang, T.8
Hinrichs, A.S.9
Zweig, A.S.10
Fujita, P.A.11
Learned, K.12
Rhead, B.13
Smith, K.E.14
Kuhn, R.M.15
Karolchik, D.16
Haussler, D.17
Kent, W.J.18
-
25
-
-
77957940722
-
The NIH roadmap epigenomics mapping consortium
-
10.1038/nbt1010-1045 20944595
-
The NIH roadmap epigenomics mapping consortium. Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, Milosavljevic A, Meissner A, Kellis M, Marra MA, Beaudet AL, Ecker JR, Farnham PJ, Hirst M, Lander ES, Mikkelsen TS, Thomson JA, Nat Biotechnol 2010 28 1045 1048 10.1038/nbt1010-1045 20944595
-
(2010)
Nat Biotechnol
, vol.28
, pp. 1045-1048
-
-
Bernstein, B.E.1
Stamatoyannopoulos, J.A.2
Costello, J.F.3
Ren, B.4
Milosavljevic, A.5
Meissner, A.6
Kellis, M.7
Marra, M.A.8
Beaudet, A.L.9
Ecker, J.R.10
Farnham, P.J.11
Hirst, M.12
Lander, E.S.13
Mikkelsen, T.S.14
Thomson, J.A.15
-
26
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
10.1038/ng.154 18552846
-
Combinatorial patterns of histone acetylations and methylations in the human genome. Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh T-Y, Peng W, Zhang MQ, Zhao K, Nat Genet 2008 40 897 903 10.1038/ng.154 18552846
-
(2008)
Nat Genet
, vol.40
, pp. 897-903
-
-
Wang, Z.1
Zang, C.2
Rosenfeld, J.A.3
Schones, D.E.4
Barski, A.5
Cuddapah, S.6
Cui, K.7
Roh, T.-Y.8
Peng, W.9
Zhang, M.Q.10
Zhao, K.11
-
27
-
-
69449101386
-
Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease
-
10.1016/j.ajhg.2009.08.007 19732864
-
Allele-specific chromatin remodeling in the ZPBP2/GSDMB/ORMDL3 locus associated with the risk of asthma and autoimmune disease. Verlaan DJ, Berlivet S, Hunninghake GM, Madore A-M, Larivière M, Moussette S, Grundberg E, Kwan T, Ouimet M, Ge B, Am J Hum Genet 2009 85 377 393 10.1016/j.ajhg.2009.08. 007 19732864
-
(2009)
Am J Hum Genet
, vol.85
, pp. 377-393
-
-
Verlaan, D.J.1
Berlivet, S.2
Hunninghake, G.M.3
Madore, A.-M.4
Larivière, M.5
Moussette, S.6
Grundberg, E.7
Kwan, T.8
Ouimet, M.9
Ge, B.10
-
28
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
10.1101/gr.092759.109 19541911
-
Circos: an information aesthetic for comparative genomics. Krzywinski MI, Schein JE, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA, Genome Res 2009 19 1639 1645 10.1101/gr.092759.109 19541911
-
(2009)
Genome Res
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.I.1
Schein, J.E.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
29
-
-
79960530899
-
Genomic imprinting: The emergence of an epigenetic paradigm
-
21765458
-
Genomic imprinting: the emergence of an epigenetic paradigm. Ferguson-Smith AC, Nat Rev Genet 2011 12 565 575 21765458
-
(2011)
Nat Rev Genet
, vol.12
, pp. 565-575
-
-
Ferguson-Smith, A.C.1
-
30
-
-
34547725157
-
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
-
10.1038/nature05987 17687327
-
DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Ooi SKT, Qiu C, Bernstein E, Li K, Jia D, Yang Z, Erdjument-Bromage H, Tempst P, Lin S-P, Allis CD, Cheng X, Bestor TH, Nature 2007 448 714 717 10.1038/nature05987 17687327
-
(2007)
Nature
, vol.448
, pp. 714-717
-
-
Ooi, S.K.T.1
Qiu, C.2
Bernstein, E.3
Li, K.4
Jia, D.5
Yang, Z.6
Erdjument-Bromage, H.7
Tempst, P.8
Lin, S.-P.9
Allis, C.D.10
Cheng, X.11
Bestor, T.H.12
-
31
-
-
22144491132
-
A census of mammalian imprinting
-
10.1016/j.tig.2005.06.008 15990197
-
A census of mammalian imprinting. Morison IM, Ramsay JP, Spencer HG, Trends Genet 2005 21 457 465 10.1016/j.tig.2005.06.008 15990197
-
(2005)
Trends Genet
, vol.21
, pp. 457-465
-
-
Morison, I.M.1
Ramsay, J.P.2
Spencer, H.G.3
-
32
-
-
68149128490
-
Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions
-
10.1101/gr.089185.108 19542493
-
Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions. Dindot SV, Person R, Strivens M, Garcia R, Beaudet AL, Genome Res 2009 19 1374 1383 10.1101/gr.089185.108 19542493
-
(2009)
Genome Res
, vol.19
, pp. 1374-1383
-
-
Dindot, S.V.1
Person, R.2
Strivens, M.3
Garcia, R.4
Beaudet, A.L.5
-
33
-
-
70350646912
-
Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies
-
10.1038/ng.446 19801982
-
Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. Rivadeneira F, Styrkársdottir U, Estrada K, Halldársson BV, Hsu Y-H, Richards JB, Zillikens MC, Kavvoura FK, Amin N, Aulchenko YS, Cupples LA, Deloukas P, Demissie S, Grundberg E, Hofman A, Kong A, Karasik D, van Meurs JB, Oostra B, Pastinen T, Pols HAP, Sigurdsson G, Soranzo N, Thorleifsson G, Thorsteinsdottir U, Williams FMK, Wilson SG, Zhou Y, Ralston SH, van Duijn CM, Spector T, Kiel DP, Stefansson K, Ioannidis JPA, Uitterlinden AG, Nat Genet 2009 41 1199 1206 10.1038/ng.446 19801982
-
(2009)
Nat Genet
, vol.41
, pp. 1199-1206
-
-
Rivadeneira, F.1
Styrkársdottir, U.2
Estrada, K.3
Halldársson, B.V.4
Hsu, Y.-H.5
Richards, J.B.6
Zillikens, M.C.7
Kavvoura, F.K.8
Amin, N.9
Aulchenko, Y.S.10
Cupples, L.A.11
Deloukas, P.12
Demissie, S.13
Grundberg, E.14
Hofman, A.15
Kong, A.16
Karasik, D.17
Van Meurs, J.B.18
Oostra, B.19
Pastinen, T.20
Pols, H.A.P.21
Sigurdsson, G.22
Soranzo, N.23
Thorleifsson, G.24
Thorsteinsdottir, U.25
Williams, F.M.K.26
Wilson, S.G.27
Zhou, Y.28
Ralston, S.H.29
Van Duijn, C.M.30
Spector, T.31
Kiel, D.P.32
Stefansson, K.33
Ioannidis, J.P.A.34
Uitterlinden, A.G.35
more..
-
34
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
10.1038/nature08514 19829295
-
Human DNA methylomes at base resolution show widespread epigenomic differences. Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo Q-M, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR, Nature 2009 462 315 322 10.1038/nature08514 19829295
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
Nery, J.R.7
Lee, L.8
Ye, Z.9
Ngo, Q.-M.10
Edsall, L.11
Antosiewicz-Bourget, J.12
Stewart, R.13
Ruotti, V.14
Millar, A.H.15
Thomson, J.A.16
Ren, B.17
Ecker, J.R.18
-
35
-
-
79957868920
-
Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
-
10.1093/bioinformatics/btr167 21493656
-
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Krueger F, Andrews SR, Bioinformatics 2011 27 1571 1572 10.1093/bioinformatics/btr167 21493656
-
(2011)
Bioinformatics
, vol.27
, pp. 1571-1572
-
-
Krueger, F.1
Andrews, S.R.2
-
36
-
-
80052260252
-
A copy number variation morbidity map of developmental delay
-
10.1038/ng.909 21841781
-
A copy number variation morbidity map of developmental delay. Cooper GM, Coe BP, Girirajan S, Rosenfeld JA, Vu TH, Baker C, Williams C, Stalker H, Hamid R, Hannig V, Abdel-Hamid H, Bader P, McCracken E, Niyazov D, Leppig K, Thiese H, Hummel M, Alexander N, Gorski J, Kussmann J, Shashi V, Johnson K, Rehder C, Ballif BC, Shaffer LG, Eichler EE, Nat Genet 2011 43 838 46 10.1038/ng.909 21841781
-
(2011)
Nat Genet
, vol.43
, pp. 838-846
-
-
Cooper, G.M.1
Coe, B.P.2
Girirajan, S.3
Rosenfeld, J.A.4
Vu, T.H.5
Baker, C.6
Williams, C.7
Stalker, H.8
Hamid, R.9
Hannig, V.10
Abdel-Hamid, H.11
Bader, P.12
McCracken, E.13
Niyazov, D.14
Leppig, K.15
Thiese, H.16
Hummel, M.17
Alexander, N.18
Gorski, J.19
Kussmann, J.20
Shashi, V.21
Johnson, K.22
Rehder, C.23
Ballif, B.C.24
Shaffer, L.G.25
Eichler, E.E.26
more..
-
37
-
-
79960640754
-
Establishment of the first WHO international genetic reference panel for Prader Willi and Angelman syndromes
-
10.1038/ejhg.2011.59 21587322
-
Establishment of the first WHO international genetic reference panel for Prader Willi and Angelman syndromes. Boyle J, Hawkins M, Barton DE, Meaney K, Guitart M, OGrady A, Tobi S, Ramsden SC, Elles R, Gray E, Metcalfe P, Hawkins JR, Eur J Hum Genet 2011 19 857 864 10.1038/ejhg.2011.59 21587322
-
(2011)
Eur J Hum Genet
, vol.19
, pp. 857-864
-
-
Boyle, J.1
Hawkins, M.2
Barton, D.E.3
Meaney, K.4
Guitart, M.5
Ogrady, A.6
Tobi, S.7
Ramsden, S.C.8
Elles, R.9
Gray, E.10
Metcalfe, P.11
Hawkins, J.R.12
-
38
-
-
33749007122
-
Epigenetics of autism spectrum disorders
-
16987877
-
Epigenetics of autism spectrum disorders. Schanen NC, Hum Mol Genet 2006 15 Spec No 2 138 R150 16987877
-
(2006)
Hum Mol Genet
, vol.15
-
-
Schanen, N.C.1
-
39
-
-
55849147656
-
17q21.31: Not your average genomic address
-
10.1126/science.322.5903.842 18988819
-
17q21.31: not your average genomic address. Pennisi E, Science 2008 322 842 845 10.1126/science.322.5903.842 18988819
-
(2008)
Science
, vol.322
, pp. 842-845
-
-
Pennisi, E.1
-
40
-
-
1442304904
-
Tau haplotypes regulate transcription and are associated with Parkinsons disease
-
10.1002/ana.10826 14991810
-
Tau haplotypes regulate transcription and are associated with Parkinsons disease. Kwok JBJ, Teber ET, Loy C, Hallupp M, Nicholson G, Mellick GD, Buchanan DD, Silburn PA, Schofield PR, Ann Neurol 2004 55 329 334 10.1002/ana.10826 14991810
-
(2004)
Ann Neurol
, vol.55
, pp. 329-334
-
-
Kwok, J.B.J.1
Teber, E.T.2
Loy, C.3
Hallupp, M.4
Nicholson, G.5
Mellick, G.D.6
Buchanan, D.D.7
Silburn, P.A.8
Schofield, P.R.9
-
41
-
-
77952245290
-
Divergence of nucleosome positioning between two closely related yeast species: Genetic basis and functional consequences
-
20461072
-
Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Tirosh I, Sigal N, Barkai N, Mol Syst Biol 2010 6 365 20461072
-
(2010)
Mol Syst Biol
, vol.6
, pp. 365
-
-
Tirosh, I.1
Sigal, N.2
Barkai, N.3
-
42
-
-
80555156662
-
Widespread signatures of recent selection linked to nucleosome positioning in the human lineage
-
10.1101/gr.122275.111 21903742
-
Widespread signatures of recent selection linked to nucleosome positioning in the human lineage. Prendergast J, Semple C, Genome Res 2011 21 1777 1787 10.1101/gr.122275.111 21903742
-
(2011)
Genome Res
, vol.21
, pp. 1777-1787
-
-
Prendergast, J.1
Semple, C.2
-
43
-
-
80052528576
-
Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin
-
10.1101/gr.118091.110 21803857
-
Histone H3 trimethylation at lysine 36 is associated with constitutive and facultative heterochromatin. Chantalat S, Depaux A, Héry P, Barral S, Thuret J-Y, Dimitrov S, Gérard M, Genome Res 2011 21 1426 1437 10.1101/gr.118091.110 21803857
-
(2011)
Genome Res
, vol.21
, pp. 1426-1437
-
-
Chantalat, S.1
Depaux, A.2
Héry, P.3
Barral, S.4
Thuret, J.-Y.5
Dimitrov, S.6
Gérard, M.7
-
44
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
10.1016/j.cell.2007.05.009 17512414
-
High-resolution profiling of histone methylations in the human genome. Barski A, Cuddapah S, Cui K, Roh T-Y, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K, Cell 2007 129 823 837 10.1016/j.cell.2007.05.009 17512414
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
45
-
-
79955550445
-
A users guide to the encyclopedia of DNA elements (ENCODE)
-
10.1371/journal.pbio.1001046 21526222
-
A users guide to the encyclopedia of DNA elements (ENCODE). Myers RM, Stamatoyannopoulos J, Snyder M, Dunham I, Hardison RC, Bernstein BE, Gingeras TR, Kent WJ, Birney E, Wold B, Crawford GE, PLoS Biol 2011 9 1001046 10.1371/journal.pbio.1001046 21526222
-
(2011)
PLoS Biol
, vol.9
, pp. 51001046
-
-
Myers, R.M.1
Stamatoyannopoulos, J.2
Snyder, M.3
Dunham, I.4
Hardison, R.C.5
Bernstein, B.E.6
Gingeras, T.R.7
Kent, W.J.8
Birney, E.9
Wold, B.10
Crawford, G.E.11
-
46
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25 19261174
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Langmead B, Trapnell C, Pop M, Salzberg SL, Genome Biol 2009 10 25 10.1186/gb-2009-10-3-r25 19261174
-
(2009)
Genome Biol
, vol.10
, pp. 1825
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
47
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
Wellcome Trust Case Control Consortium T. 10.1038/nature05911 17554300
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. The Wellcome Trust Case Control Consortium, Nature 2007 447 661 678 10.1038/nature05911 17554300
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
-
48
-
-
78049412267
-
Diversity of human copy number variation and multicopy genes
-
10.1126/science.1197005 21030649
-
Diversity of human copy number variation and multicopy genes. Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J, Eichler EE, 1000 Genomes Project, Science 2010 330 641 646 10.1126/science.1197005 21030649
-
(2010)
Science
, vol.330
, pp. 641-646
-
-
Sudmant, P.H.1
Kitzman, J.O.2
Antonacci, F.3
Alkan, C.4
Malig, M.5
Tsalenko, A.6
Sampas, N.7
Bruhn, L.8
Shendure, J.9
Eichler, E.E.10
-
49
-
-
34347353237
-
Copy-number variation and association studies of human disease
-
10.1038/ng2080 17597780
-
Copy-number variation and association studies of human disease. McCarroll SA, Altshuler DM, Nat Genet 2007 39 37 S42 10.1038/ng2080 17597780
-
(2007)
Nat Genet
, vol.39
-
-
McCarroll, S.A.1
Altshuler, D.M.2
-
51
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
10.1038/nbt.1621 20436464
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L, Nat Biotechnol 2010 28 511 515 10.1038/nbt.1621 20436464
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
52
-
-
76349117214
-
The distribution and most recent common ancestor of the 17q21 inversion in humans
-
10.1016/j.ajhg.2010.01.007 20116045
-
The distribution and most recent common ancestor of the 17q21 inversion in humans. Donnelly MP, Paschou P, Grigorenko E, Gurwitz D, Mehdi SQ, Kajuna SLB, Barta C, Kungulilo S, Karoma NJ, Lu R-B, Zhukova OV, Kim J-J, Comas D, Siniscalco M, New M, Li P, Li H, Manolopoulos VG, Speed WC, Rajeevan H, Pakstis AJ, Kidd JR, Kidd KK, Am J Hum Genet 2010 86 161 171 10.1016/j.ajhg.2010.01.007 20116045
-
(2010)
Am J Hum Genet
, vol.86
, pp. 161-171
-
-
Donnelly, M.P.1
Paschou, P.2
Grigorenko, E.3
Gurwitz, D.4
Mehdi, S.Q.5
Kajuna, S.L.B.6
Barta, C.7
Kungulilo, S.8
Karoma, N.J.9
Lu, R.-B.10
Zhukova, O.V.11
Kim, J.-J.12
Comas, D.13
Siniscalco, M.14
New, M.15
Li, P.16
Li, H.17
Manolopoulos, V.G.18
Speed, W.C.19
Rajeevan, H.20
Pakstis, A.J.21
Kidd, J.R.22
Kidd, K.K.23
more..
|