메뉴 건너뛰기




Volumn 12, Issue 1, 2012, Pages

Molecular evolution of pentatricopeptide repeat genes reveals truncation in species lacking an editing target and structural domains under distinct selective pressures

Author keywords

Alpha helix; Brassicaceae; dN dS; PPR; RNA editing; Truncation

Indexed keywords

CELL ORGANELLE; CHLOROPLAST; COEVOLUTION; DICOTYLEDON; GENOME; MOLECULAR ANALYSIS; PEPTIDE; PHYLOGENETICS; PHYLOGENY; PROTEIN; SELECTION; SUBSTRATE;

EID: 84860829782     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-12-66     Document Type: Article
Times cited : (29)

References (51)
  • 2
    • 77957774121 scopus 로고    scopus 로고
    • DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?
    • 10.1016/j.febslet.2010.09.041 20888816
    • DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer? Knoop V, Rüdinger M, FEBS Lett 2010 584 20 4287 4291 10.1016/j.febslet.2010.09.041 20888816
    • (2010) FEBS Lett , vol.584 , Issue.20 , pp. 4287-4291
    • Knoop, V.1    Rüdinger, M.2
  • 3
    • 83755172749 scopus 로고    scopus 로고
    • Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems
    • 10.1093/nar/gkr691 21890906
    • Evolution of the deaminase fold and multiple origins of eukaryotic editing and mutagenic nucleic acid deaminases from bacterial toxin systems. Iyer LM, Zhang DP, Rogozin IB, Aravind L, Nucleic Acids Res 2011 39 22 9473 9497 10.1093/nar/gkr691 21890906
    • (2011) Nucleic Acids Res , vol.39 , Issue.22 , pp. 9473-9497
    • Iyer, L.M.1    Zhang, D.P.2    Rogozin, I.B.3    Aravind, L.4
  • 4
    • 45849098234 scopus 로고    scopus 로고
    • Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts
    • DOI 10.1093/molbev/msn084
    • Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in Jungermanniid but not in Marchantiid liverworts. Rüdinger M, Polsakiewicz M, Knoop V, Mol Biol Evol 2008 25 7 1405 1414 10.1093/molbev/msn084 18400790 (Pubitemid 351882014)
    • (2008) Molecular Biology and Evolution , vol.25 , Issue.7 , pp. 1405-1414
    • Rudinger, M.1    Polsakiewicz, M.2    Knoop, V.3
  • 5
    • 34548133226 scopus 로고    scopus 로고
    • A hypothesis on the identification of the editing enzyme in plant organelles
    • DOI 10.1016/j.febslet.2007.07.075, PII S0014579307008563
    • A hypothesis on the identification of the editing enzyme in plant organelles. Salone V, Rüdinger M, Polsakiewicz M, Hoffmann B, Groth-Malonek M, Szurek B, Small I, Knoop V, Lurin C, FEBS Lett 2007 581 22 4132 4138 10.1016/j.febslet.2007.07.075 17707818 (Pubitemid 47301862)
    • (2007) FEBS Letters , vol.581 , Issue.22 , pp. 4132-4138
    • Salone, V.1    Rudinger, M.2    Polsakiewicz, M.3    Hoffmann, B.4    Groth-Malonek, M.5    Szurek, B.6    Small, I.7    Knoop, V.8    Lurin, C.9
  • 6
    • 0036678039 scopus 로고    scopus 로고
    • A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants
    • 10.1073/pnas.102301599 12136123
    • A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants. Bentolila S, Alfonso AA, Hanson MR, Proc Natl Acad Sci U S A 2002 99 16 10887 10892 10.1073/pnas.102301599 12136123
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.16 , pp. 10887-10892
    • Bentolila, S.1    Alfonso, A.A.2    Hanson, M.R.3
  • 7
    • 0033522445 scopus 로고    scopus 로고
    • Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression
    • DOI 10.1093/emboj/18.9.2621
    • Molecular cloning of the maize gene CRP1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. Fisk DG, Walker MB, Barkan A, Embo J 1999 18 9 2621 2630 10.1093/emboj/18.9.2621 10228173 (Pubitemid 29213291)
    • (1999) EMBO Journal , vol.18 , Issue.9 , pp. 2621-2630
    • Fisk, D.G.1    Walker, M.B.2    Barkan, A.3
  • 8
    • 12744253474 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
    • 10.1038/nature03229 15662426
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Kotera E, Tasaka M, Shikanai T, Nature 2005 433 7023 326 330 10.1038/nature03229 15662426
    • (2005) Nature , vol.433 , Issue.7023 , pp. 326-330
    • Kotera, E.1    Tasaka, M.2    Shikanai, T.3
  • 9
    • 0035028602 scopus 로고    scopus 로고
    • BSF binds specifically to the bicoid mRNA 3′ untranslated region and contributes to stabilization of bicoid mRNA
    • DOI 10.1128/MCB.21.10.3462-3471.2001
    • BSF binds specifically to the bicoid mRNA 3 ' untranslated region and contributes to stabilization of bicoid mRNA. Mancebo R, Zhou XL, Shillinglaw W, Henzel W, MacDonald PM, Mol Cell Biol 2001 21 10 3462 3471 10.1128/MCB.21.10. 3462-3471.2001 11313472 (Pubitemid 32381782)
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.10 , pp. 3462-3471
    • Mancebo, R.1    Zhou, X.2    Shillinglaw, W.3    Henzel, W.4    Macdonald, P.M.5
  • 10
    • 0028984035 scopus 로고
    • The product of the nuclear gene PET309 is required for translation of mature messenger-rna and stability or production of intron-containing rnas derived from the mitochondrial cox1 locus of saccharomyces-cerevisiae
    • 7664742
    • The Product of the Nuclear Gene PET309 Is Required for Translation of Mature Messenger-Rna and Stability or Production of Intron-Containing Rnas Derived from the Mitochondrial COX1 Locus of Saccharomyces-Cerevisiae. Manthey GM, Mcewen JE, Embo J 1995 14 16 4031 4043 7664742
    • (1995) Embo J , vol.14 , Issue.16 , pp. 4031-4043
    • Manthey, G.M.1    McEwen, J.E.2
  • 11
    • 4344595430 scopus 로고    scopus 로고
    • The role of the LRPPRC (leucine-rich pentatricopeptide repeal cassette) gene in cytochrome oxidase assembly: Mutation causes lowered levels of COX (cytochrome c oxidase) I and COX III mRNA
    • DOI 10.1042/BJ20040469
    • The role of the LRPPRC (leucine-rich pentatricopeptide repeat cassette) gene in cytochrome oxidase assembly: mutation causes lowered levels of COX (cytochrome c oxidase) I and COX III mRNA. Xu F, Morin C, Mitchell G, Ackerley C, Robinson BH, Biochem J 2004 382 Pt 1 331 336 15139850 (Pubitemid 39141597)
    • (2004) Biochemical Journal , vol.382 , Issue.1 , pp. 331-336
    • Xu, F.1    Morin, C.2    Mitchell, G.3    Ackerley, C.4    Robinson, B.H.5
  • 12
    • 0024419064 scopus 로고
    • RNA editing in plant mitochondria
    • DOI 10.1038/341662a0
    • RNA editing in plant mitochondria. Covello PS, Gray MW, Nature 1989 341 6243 662 666 10.1038/341662a0 2552326 (Pubitemid 19257319)
    • (1989) Nature , vol.341 , Issue.6243 , pp. 662-666
    • Covello, P.S.1    Gray, M.W.2
  • 13
    • 0027081935 scopus 로고
    • Identification of editing positions in the ndhB transcript from maize chloroplasts reveals sequence similarities between editing sites of chloroplasts and plant mitochondria
    • Identification of Editing Positions in the Ndhb Transcript from Maize Chloroplasts Reveals Sequence Similarities between Editing Sites of Chloroplasts and Plant-Mitochondria. Maier RM, Neckermann K, Hoch B, Akhmedov NB, Kossel H, Nucleic Acids Res 1992 20 23 6189 6194 10.1093/nar/20.23.6189 1282235 (Pubitemid 23039144)
    • (1992) Nucleic Acids Research , vol.20 , Issue.23 , pp. 6189-6194
    • Maier, R.M.1    Neckermann, K.2    Hoch, B.3    Akhmedov, N.B.4    Kossel, H.5
  • 14
    • 0027201750 scopus 로고
    • On the evolution of RNA editing
    • DOI 10.1016/0168-9525(93)90011-6
    • On the evolution of RNA editing. Covello PS, Gray MW, Trends Genet 1993 9 8 265 268 10.1016/0168-9525(93)90011-6 8379005 (Pubitemid 23218831)
    • (1993) Trends in Genetics , vol.9 , Issue.8 , pp. 265-268
    • Covello, P.S.1    Gray, M.W.2
  • 15
    • 67650175499 scopus 로고    scopus 로고
    • LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis
    • 10.1104/pp.109.136812 19448041
    • LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis. Cai W, Ji D, Peng L, Guo J, Ma J, Zou M, Lu C, Zhang L, Plant Physiol 2009 150 3 1260 1271 10.1104/pp.109.136812 19448041
    • (2009) Plant Physiol , vol.150 , Issue.3 , pp. 1260-1271
    • Cai, W.1    Ji, D.2    Peng, L.3    Guo, J.4    Ma, J.5    Zou, M.6    Lu, C.7    Zhang, L.8
  • 17
    • 73249140998 scopus 로고    scopus 로고
    • A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites
    • 10.1105/tpc.109.071472 19934379
    • A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Hammani K, Okuda K, Tanz SK, Chateigner-Boutin AL, Shikanai T, Small I, Plant Cell 2009 21 11 3686 3699 10.1105/tpc.109.071472 19934379
    • (2009) Plant Cell , vol.21 , Issue.11 , pp. 3686-3699
    • Hammani, K.1    Okuda, K.2    Tanz, S.K.3    Chateigner-Boutin, A.L.4    Shikanai, T.5    Small, I.6
  • 20
    • 66449092805 scopus 로고    scopus 로고
    • A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript
    • 10.1261/rna.1533909 19395655
    • A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. Robbins JC, Heller WP, Hanson MR, RNA 2009 15 6 1142 1153 10.1261/rna.1533909 19395655
    • (2009) RNA , vol.15 , Issue.6 , pp. 1142-1153
    • Robbins, J.C.1    Heller, W.P.2    Hanson, M.R.3
  • 21
    • 63349084758 scopus 로고    scopus 로고
    • The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth
    • 19054358
    • The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth. Zhou W, Cheng Y, Yap A, Chateigner-Boutin AL, Delannoy E, Hammani K, Small I, Huang J, Plant J 2008 58 1 82 96 19054358
    • (2008) Plant J , vol.58 , Issue.1 , pp. 82-96
    • Zhou, W.1    Cheng, Y.2    Yap, A.3    Chateigner-Boutin, A.L.4    Delannoy, E.5    Hammani, K.6    Small, I.7    Huang, J.8
  • 22
    • 56049116911 scopus 로고    scopus 로고
    • Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids
    • 10.1093/nar/gkn629 18824480
    • Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids. Okuda K, Habata Y, Kobayashi Y, Shikanai T, Nucleic Acids Res 2008 36 19 6155 6164 10.1093/nar/gkn629 18824480
    • (2008) Nucleic Acids Res , vol.36 , Issue.19 , pp. 6155-6164
    • Okuda, K.1    Habata, Y.2    Kobayashi, Y.3    Shikanai, T.4
  • 23
    • 84857213235 scopus 로고    scopus 로고
    • The E-class PPR Protein MEF3 of Arabidopsis thaliana can Function in Mitochondrial RNA editing also with an Additional DYW Domain
    • 10.1093/pcp/pcr182 22186180
    • The E-class PPR Protein MEF3 of Arabidopsis thaliana can Function in Mitochondrial RNA editing also with an Additional DYW Domain. Verbitskiy D, van der Merwe JA, Zehrmann A, Härtel B, Takenaka M, Plant Cell Physiol 2012 53 2 358 367 10.1093/pcp/pcr182 22186180
    • (2012) Plant Cell Physiol , vol.53 , Issue.2 , pp. 358-367
    • Verbitskiy, D.1    Van Der Merwe, J.A.2    Zehrmann, A.3    Härtel, B.4    Takenaka, M.5
  • 24
    • 75749152607 scopus 로고    scopus 로고
    • The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana
    • 10.1111/j.1365-313X.2009.04076.x 19919573
    • The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana. Verbitskiy D, Zehrmann A, van der Merwe JA, Brennicke A, Takenaka M, Plant J 2010 61 3 446 455 10.1111/j.1365-313X.2009.04076.x 19919573
    • (2010) Plant J , vol.61 , Issue.3 , pp. 446-455
    • Verbitskiy, D.1    Zehrmann, A.2    Van Der Merwe, J.A.3    Brennicke, A.4    Takenaka, M.5
  • 25
    • 85011940618 scopus 로고    scopus 로고
    • PPR proteins network as site-specific RNA editing factors in plant organelles
    • 10.4161/rna.8.1.14298 21289490
    • PPR proteins network as site-specific RNA editing factors in plant organelles. Zehrmann A, Verbitskiy D, Härtel B, Brennicke A, Takenaka M, RNA Biol 2011 8 1 67 70 10.4161/rna.8.1.14298 21289490
    • (2011) RNA Biol , vol.8 , Issue.1 , pp. 67-70
    • Zehrmann, A.1    Verbitskiy, D.2    Härtel, B.3    Brennicke, A.4    Takenaka, M.5
  • 26
    • 33645791446 scopus 로고    scopus 로고
    • Maintenance of plastid RNA editing activities independently of their target sites
    • 10.1038/sj.embor.7400619 16415790
    • Maintenance of plastid RNA editing activities independently of their target sites. Tillich M, Poltnigg P, Kushnir S, Schmitz-Linneweber C, Embo Rep 2006 7 3 308 313 10.1038/sj.embor.7400619 16415790
    • (2006) Embo Rep , vol.7 , Issue.3 , pp. 308-313
    • Tillich, M.1    Poltnigg, P.2    Kushnir, S.3    Schmitz-Linneweber, C.4
  • 27
    • 79957880500 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins constrain genome evolution in chloroplasts
    • 10.1093/molbev/msr023 21263042
    • Pentatricopeptide repeat proteins constrain genome evolution in chloroplasts. Hayes ML, Mulligan RM, Mol Biol Evol 2011 28 7 2029 2039 10.1093/molbev/msr023 21263042
    • (2011) Mol Biol Evol , vol.28 , Issue.7 , pp. 2029-2039
    • Hayes, M.L.1    Mulligan, R.M.2
  • 30
    • 0029989864 scopus 로고    scopus 로고
    • Sequences directing C to U editing of the plastid psbL mRNA ape located within a 22 nucleotide segment spanning the editing site
    • Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site. Chaudhuri S, Maliga P, Embo J 1996 15 21 5958 5964 8918473 (Pubitemid 26375517)
    • (1996) EMBO Journal , vol.15 , Issue.21 , pp. 5958-5964
    • Chaudhuri, S.1    Maliga, P.2
  • 31
    • 33846411435 scopus 로고    scopus 로고
    • Identification of a sequence motif critical for editing of a tobacco chloroplast transcript
    • DOI 10.1261/rna.295607
    • Identification of a sequence motif critical for editing of a tobacco chloroplast transcript. Hayes ML, Hanson MR, RNA 2007 13 2 281 288 17158709 (Pubitemid 46147902)
    • (2007) RNA , vol.13 , Issue.2 , pp. 281-288
    • Hayes, M.L.1    Hanson, M.R.2
  • 32
    • 0036784578 scopus 로고    scopus 로고
    • Recognition of RNA editing sites is directed by unique proteins in chloroplasts: Biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts
    • 10.1128/MCB.22.19.6726-6734.2002 12215530
    • Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts. Miyamoto T, Obokata J, Sugiura M, Mol Cell Biol 2002 22 19 6726 6734 10.1128/MCB.22.19.6726- 6734.2002 12215530
    • (2002) Mol Cell Biol , vol.22 , Issue.19 , pp. 6726-6734
    • Miyamoto, T.1    Obokata, J.2    Sugiura, M.3
  • 33
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • 10.1016/S0169-5347(00)01994-7 11114436
    • Statistical methods for detecting molecular adaptation. Yang ZH, Bielawski JP, Trends Ecol Evol 2000 15 12 496 503 10.1016/S0169-5347(00)01994-7 11114436
    • (2000) Trends Ecol Evol , vol.15 , Issue.12 , pp. 496-503
    • Yang, Z.H.1    Bielawski, J.P.2
  • 34
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif - A TPR-related motif prevalent in plant organellar proteins
    • PII S0968000499015200
    • The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Small ID, Peeters N, Trends Biochem Sci 2000 25 2 46 47 10664580 (Pubitemid 30100363)
    • (2000) Trends in Biochemical Sciences , vol.25 , Issue.2 , pp. 46-47
    • Small, I.D.1    Peeters, N.2
  • 35
    • 79952166885 scopus 로고    scopus 로고
    • Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
    • 10.1073/pnas.1007667108 21220331
    • Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Fujii S, Bond CS, Small ID, Proc Natl Acad Sci U S A 2011 108 4 1723 1728 10.1073/pnas.1007667108 21220331
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.4 , pp. 1723-1728
    • Fujii, S.1    Bond, C.S.2    Small, I.D.3
  • 36
    • 37749036789 scopus 로고    scopus 로고
    • Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles
    • 10.1042/BST0351643 18031283
    • Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles. Delannoy E, Stanley WA, Bond CS, Small ID, Biochem Soc Trans 2007 35 1643 1647 10.1042/BST0351643 18031283
    • (2007) Biochem Soc Trans , vol.35 , pp. 1643-1647
    • Delannoy, E.1    Stanley, W.A.2    Bond, C.S.3    Small, I.D.4
  • 37
    • 80054015954 scopus 로고    scopus 로고
    • Structure of human mitochondrial RNA polymerase
    • 10.1038/nature10435 21947009
    • Structure of human mitochondrial RNA polymerase. Ringel R, Sologub M, Morozov YI, Litonin D, Cramer P, Temiakov D, Nature 2011 478 7368 269 273 10.1038/nature10435 21947009
    • (2011) Nature , vol.478 , Issue.7368 , pp. 269-273
    • Ringel, R.1    Sologub, M.2    Morozov, Y.I.3    Litonin, D.4    Cramer, P.5    Temiakov, D.6
  • 38
    • 51749104177 scopus 로고    scopus 로고
    • High conservation of a 5' element required for RNA editing of a C target in chloroplast psbE transcripts
    • 10.1007/s00239-008-9101-9 18696032
    • High conservation of a 5' element required for RNA editing of a C target in chloroplast psbE transcripts. Hayes ML, Hanson MR, J Mol Evol 2008 67 3 233 245 10.1007/s00239-008-9101-9 18696032
    • (2008) J Mol Evol , vol.67 , Issue.3 , pp. 233-245
    • Hayes, M.L.1    Hanson, M.R.2
  • 40
    • 49249105375 scopus 로고    scopus 로고
    • Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice
    • 10.1111/j.1365-313X.2008.03529.x 18435825
    • Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice. Kazama T, Nakamura T, Watanabe M, Sugita M, Toriyama K, Plant Journal 2008 55 4 619 628 10.1111/j.1365-313X.2008. 03529.x 18435825
    • (2008) Plant Journal , vol.55 , Issue.4 , pp. 619-628
    • Kazama, T.1    Nakamura, T.2    Watanabe, M.3    Sugita, M.4    Toriyama, K.5
  • 41
    • 62549107493 scopus 로고    scopus 로고
    • Characterization of Raphanus sativus Pentatricopeptide Repeat Proteins Encoded by the Fertility Restorer Locus for Ogura Cytoplasmic Male Sterility
    • 10.1105/tpc.107.057208 19098270
    • Characterization of Raphanus sativus Pentatricopeptide Repeat Proteins Encoded by the Fertility Restorer Locus for Ogura Cytoplasmic Male Sterility. Uyttewaal M, Arnal N, Quadrado M, Martin-Canadell A, Vrielynck N, Hiard S, Gherbi H, Bendahmane A, Budar F, Mireau H, Plant Cell 2008 20 12 3331 3345 10.1105/tpc.107.057208 19098270
    • (2008) Plant Cell , vol.20 , Issue.12 , pp. 3331-3345
    • Uyttewaal, M.1    Arnal, N.2    Quadrado, M.3    Martin-Canadell, A.4    Vrielynck, N.5    Hiard, S.6    Gherbi, H.7    Bendahmane, A.8    Budar, F.9    Mireau, H.10
  • 42
    • 0002788379 scopus 로고
    • Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant-tissues
    • 10.1007/BF00020088
    • Extraction of DNA from Milligram Amounts of Fresh, Herbarium and Mummified Plant-Tissues. Rogers SO, Bendich AJ, Plant Mol Biol 1985 5 2 69 76 10.1007/BF00020088
    • (1985) Plant Mol Biol , vol.5 , Issue.2 , pp. 69-76
    • Rogers, S.O.1    Bendich, A.J.2
  • 43
    • 27144526458 scopus 로고    scopus 로고
    • SiteFinding-PCR: A simple and efficient PCR method for chromosome walking
    • DOI 10.1093/nar/gni124
    • SiteFinding-PCR: a simple and efficient PCR method for chromosome walking. Tan GH, Gao Y, Shi M, Zhang XY, He SP, Cheng ZL, An CC, Nucleic Acids Res 2005 33 13 122 10.1093/nar/gni124 16077029 (Pubitemid 41487308)
    • (2005) Nucleic Acids Research , vol.33 , Issue.13 , pp. 1-7
    • Tan, G.1    Gao, Y.2    Shi, M.3    Zhang, X.4    He, S.5    Chen, Z.6    An, C.7
  • 44
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Hall TA, Nucleic Acids Symposium Series (1999) 1999 41 41 95 98
    • (1999) Nucleic Acids Symposium Series (1999) , vol.41 , Issue.41 , pp. 95-98
    • Hall, T.A.1
  • 45
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • DOI 10.1080/10635150390235520
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Guindon S, Gascuel O, Syst Biol 2003 52 5 696 704 10.1080/10635150390235520 14530136 (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 46
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • 9367129
    • PAML: a program package for phylogenetic analysis by maximum likelihood. Yang ZH, Comput Appl Biosci 1997 13 5 555 556 9367129
    • (1997) Comput Appl Biosci , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.H.1
  • 47
    • 74249104499 scopus 로고    scopus 로고
    • Fast and accurate automatic structure prediction with HHpred
    • 10.1002/prot.22499 19626712
    • Fast and accurate automatic structure prediction with HHpred. Hildebrand A, Remmert M, Biegert A, Söding J, Proteins 2009 77 128 132 10.1002/prot.22499 19626712
    • (2009) Proteins , vol.77 , pp. 128-132
    • Hildebrand, A.1    Remmert, M.2    Biegert, A.3    Söding, J.4
  • 48
    • 50649095496 scopus 로고    scopus 로고
    • Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand
    • 10.1261/rna.1077708 18669444
    • Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand. Williams-Carrier R, Kroeger T, Barkan A, RNA 2008 14 9 1930 1941 10.1261/rna.1077708 18669444
    • (2008) RNA , vol.14 , Issue.9 , pp. 1930-1941
    • Williams-Carrier, R.1    Kroeger, T.2    Barkan, A.3
  • 49
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unified platform for automated protein structure and function prediction
    • 10.1038/nprot.2010.5 20360767
    • I-TASSER: a unified platform for automated protein structure and function prediction. Roy A, Kucukural A, Zhang Y, Nat Protoc 2010 5 4 725 738 10.1038/nprot.2010.5 20360767
    • (2010) Nat Protoc , vol.5 , Issue.4 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 50
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121 21546353
    • MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 10 2731 2739 10.1093/molbev/msr121 21546353
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 51
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • DOI 10.1080/10635150600755453, PII T8083888667361
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Anisimova M, Gascuel O, Systematic biology 2006 55 4 539 552 10.1080/10635150600755453 16785212 (Pubitemid 43922340)
    • (2006) Systematic Biology , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.