Recognition of RNA editing sites is directed by unique proteins in chloroplasts: Biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts

Molecular and Cellular Biology

Volumn 22, Issue 19, 2002, Pages 6726-6734

  Miyamoto, Tetsuya ^a   Obokata, Junichi ^a   Sugiura, Masahiro ^a  

^a NAGOYA CITY UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST RNA; DNA; ELEMENT; MESSENGER RNA; PLANT EXTRACT; PROTEIN;

ARTICLE; BINDING AFFINITY; CHEMICAL ANALYSIS; CHEMICAL PROCEDURES; CHEMICAL STRUCTURE; CHLOROPLAST; CHLOROPLAST GENETICS; DATA ANALYSIS; GENE IDENTIFICATION; IN VITRO STUDY; LABORATORY; LABORATORY TEST; PEA; PLANT; PRIORITY JOURNAL; PROTEIN BINDING; RNA EDITING; TOBACCO;

5' UNTRANSLATED REGIONS; BINDING SITES; CELL-FREE SYSTEM; CHLOROPLASTS; GENES, REGULATOR; PEAS; PLANT PROTEINS; REGULATORY SEQUENCES, NUCLEIC ACID; RNA EDITING; RNA, PLANT; SUBSTRATE SPECIFICITY; TOBACCO; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTORS;

EMBRYOPHYTA; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; PISUM SATIVUM;

EID: 0036784578     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.22.19.6726-6734.2002     Document Type: Article

References (60)

1. In vitro synthesis and uptake of cytoplasmically synthesized chloroplast proteins
2. RNA editing: How a message is changed
3. Introduction of a heterologous editing site into the tobacco plastid genome: The lack of RNA editing leads to a mutant phenotype
4. In vivo dissection of cis-acting determinants for plastid RNA editing
5. Transcript editing in chloroplasts of higher plants
6. Identification of critical nucleotide positions for plastid RNA editing site recognition
7. Extraplastidic site-specific factors mediate RNA editing in chloroplasts
8. Analysis of RNA editing in plastids
9. Sense from nonsense: How the genetic information of chloroplasts is altered by RNA editing
10. RNA editing in plant mitochondria and chloroplasts
11. RNA editing in plant mitochondria
12. RNA editing
13. Cytochrome b559 genes from Oenothera hooked and Nicotiana tabacum show a remarkably high degree of conservation as compared to spinach
14. Site-specific factor involved in the editing of the psbL mRNA in tobacco plastids
15. Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site
16. Conservation of RNA editing between rice and maize plastids: Are most editing events dispensable?
17. RNA editing in plant mitochondria
18. An in vitro system for the editing of apolipoprotein B mRNA
19. RNA editing by cytidine deamination in mammals
20. Adenosine-to-inosine RNA editing: Substrates and consequences
21. RNA editing in maize chloroplasts is a processing step independent of splicing and cleavage to monocistronic mRNAs
22. Occurrence of plastid RNA editing in all major lineages of land plants
23. RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs
24. RNA editing in wheat mitochondria results in the conservation of protein sequences
25. Plant organelle gene expression: Altered by RNA editing
26. Transfer of plastid RNA-editing activity to novel sites suggests a critical role for spacing in editing-site recognition
27. RNA editing in plant mitochondria
28. Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta
29. Occurrence of silent RNA editing in chloroplasts: Its species specificity and the influence of environmental and developmental conditions
30. RNA editing sites in tobacco chloroplast transcripts: Editing as a possible regulator of chloroplast RNA polymerase activity
31. Involvement of a site-specific trans-acting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system
32. Editing of a chloroplast mRNA by creation of an initiation codon
33. RNA editing in tobacco chloroplasts leads to the formation of a translatable psbL mRNA by a C to U substitution within the intiation codon
34. Nucleotide sequence of the 5.6 kbp psbB operon of pea chloroplast DNA
35. Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
36. RNA editing in plant mitochondria and chloroplasts
37. RNA editing in bryophytes and a molecular phylogeny of land plants
38. RNA editing by base conversion in plant organellar RNAs
39. RNA editing in mitochondria and plastids
40. A heterologous maize rpoB editing site is recognized by transgenic tobacco chloroplasts
41. A single alteration 20 nt 5′ to an editing target inhibits chloroplast RNA editing in vivo
42. Chloroplast RNA editing required for functional acetyl-CoA carboxylase in plants
43. Heterologous, splicing-dependent RNA editing in chloroplasts: Allotetraploidy provides trans-factors
44. The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
45. RNA editing
46. A guide to RNA editing
47. RNA editing in kinetoplastid mitochondria
48. Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: Mapping of eleven ribosomal protein genes
49. Evolution and mechanism of translation in chloroplasts
50. High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene
51. Rapid splicing and stepwise processing of a transcript from the psbB operon in tobacco chloroplasts: Determination of the intron sites in petB and petD
52. Comparative analysis of RNA editing sites in higher plant chloroplasts
53. Creation of a novel protein-coding region at the RNA level in black pine chloroplasts: The pattern of RNA editing in the gymnosperm chloroplast is different from that in angiosperms
54. Updated gene map of tobacco chloroplast DNA
55. The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing
56. 559
57. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
58. Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants
59. Extensive RNA editing and possible double-stranded structures determining editing sites in the atpB transcripts of hornwort chloroplasts
60. 6 in Chlamydomonas reinhardtii disclose the functional significance for a proline to leucine conversion by petB editing in maize and tobacco