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Volumn 9, Issue 1, 2009, Pages

Loss of matK RNA editing in seed plant chloroplasts

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NUCLEOTIDE;

EID: 70349197947     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-201     Document Type: Article
Times cited : (18)

References (42)
  • 1
    • 4444363004 scopus 로고    scopus 로고
    • High levels of RNA editing in a vascular plant chloroplast genome: Analysis of transcripts from the fern Adiantum capillus-veneris
    • 10.1016/j.gene.2004.06.018. 15363849
    • High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris. PG Wolf CA Rowe M Hasebe, Gene 2004 339 89 97 10.1016/j.gene.2004.06.018 15363849
    • (2004) Gene , vol.339 , pp. 89-97
    • Wolf, P.G.1    Rowe, C.A.2    Hasebe, M.3
  • 2
    • 0037736768 scopus 로고    scopus 로고
    • RNA editing in hornwort chloroplasts makes more than half the genes functional
    • 10.1093/nar/gkg327. 12711687
    • RNA editing in hornwort chloroplasts makes more than half the genes functional. M Kugita Y Yamamoto T Fujikawa T Matsumoto K Yoshinaga, Nucleic Acids Res 2003 31 9 2417 2423 10.1093/nar/gkg327 12711687
    • (2003) Nucleic Acids Res , vol.31 , Issue.9 , pp. 2417-2423
    • Kugita, M.1    Yamamoto, Y.2    Fujikawa, T.3    Matsumoto, T.4    Yoshinaga, K.5
  • 3
    • 0030998440 scopus 로고    scopus 로고
    • Occurrence of plastid RNA editing in all major lineages of land plants
    • 10.1073/pnas.94.12.6285. 9177209
    • Occurrence of plastid RNA editing in all major lineages of land plants. R Freyer MC Kiefer-Meyer H Kossel, Proc Natl Acad Sci USA 1997 94 12 6285 6290 10.1073/pnas.94.12.6285 9177209
    • (1997) Proc Natl Acad Sci USA , vol.94 , Issue.12 , pp. 6285-6290
    • Freyer, R.1    Kiefer-Meyer, M.C.2    Kossel, H.3
  • 4
    • 0028024292 scopus 로고
    • Introduction of a heterologous editing site into the tobacco plastid genome: The lack of RNA editing leads to a mutant phenotype
    • 7925303
    • Introduction of a heterologous editing site into the tobacco plastid genome: the lack of RNA editing leads to a mutant phenotype. R Bock H Kossel P Maliga, Embo J 1994 13 19 4623 4628 7925303
    • (1994) Embo J , vol.13 , Issue.19 , pp. 4623-4628
    • Bock, R.1    Kossel, H.2    Maliga, P.3
  • 5
    • 32944475665 scopus 로고    scopus 로고
    • Pigment Deficiency in Nightshade/Tobacco Cybrids Is Caused by the Failure to Edit the Plastid ATPase alpha-Subunit mRNA
    • 10.1105/tpc.105.032474. 15894714
    • Pigment Deficiency in Nightshade/Tobacco Cybrids Is Caused by the Failure to Edit the Plastid ATPase alpha-Subunit mRNA. C Schmitz-Linneweber S Kushnir E Babiychuk P Poltnigg RG Herrmann RM Maier, Plant Cell 2005 17 1815 1828 10.1105/tpc.105.032474 15894714
    • (2005) Plant Cell , vol.17 , pp. 1815-1828
    • Schmitz-Linneweber, C.1    Kushnir, S.2    Babiychuk, E.3    Poltnigg, P.4    Herrmann, R.G.5    Maier, R.M.6
  • 6
    • 34548842769 scopus 로고    scopus 로고
    • RNA splicing and RNA editing in chloroplasts
    • Berlin, Heidelberg: Springer Bock R
    • RNA splicing and RNA editing in chloroplasts. C Schmitz-Linneweber A Barkan, Cell and Molecular Biology of Plastids Berlin, Heidelberg: Springer, Bock R, 2007 19 213 248
    • (2007) Cell and Molecular Biology of Plastids , vol.19 , pp. 213-248
    • Schmitz-Linneweber, C.1    Barkan, A.2
  • 7
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • 10.1006/jmbi.1995.0460. 7666415
    • Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. RM Maier K Neckermann GL Igloi H Kossel, J Mol Biol 1995 251 5 614 628 10.1006/jmbi.1995.0460 7666415
    • (1995) J Mol Biol , vol.251 , Issue.5 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kossel, H.4
  • 8
    • 33746450368 scopus 로고    scopus 로고
    • Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes
    • 10.1007/s00239-005-0254-5. 16830097
    • Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes. S Kahlau S Aspinall JC Gray R Bock, J Mol Evol 2006 63 2 194 207 10.1007/s00239-005-0254-5 16830097
    • (2006) J Mol Evol , vol.63 , Issue.2 , pp. 194-207
    • Kahlau, S.1    Aspinall, S.2    Gray, J.C.3    Bock, R.4
  • 9
    • 0038082064 scopus 로고    scopus 로고
    • Identification of RNA Editing Sites in Chloroplast Transcripts from the Maternal and Paternal Progenitors of Tobacco (Nicotiana tabacum): Comparative Analysis Shows the Involvement of Distinct Trans-Factors for ndhB Editing
    • 10.1093/molbev/msg098. 12716996
    • Identification of RNA Editing Sites in Chloroplast Transcripts from the Maternal and Paternal Progenitors of Tobacco (Nicotiana tabacum): Comparative Analysis Shows the Involvement of Distinct Trans-Factors for ndhB Editing. T Sasaki Y Yukawa T Miyamoto J Obokata M Sugiura, Mol Biol Evol 2003 20 7 1028 1035 10.1093/molbev/msg098 12716996
    • (2003) Mol Biol Evol , vol.20 , Issue.7 , pp. 1028-1035
    • Sasaki, T.1    Yukawa, Y.2    Miyamoto, T.3    Obokata, J.4    Sugiura, M.5
  • 10
    • 0031046930 scopus 로고    scopus 로고
    • Accelerated evolution of sites undergoing mRNA editing in plant mitochondria and chloroplasts
    • 9066800
    • Accelerated evolution of sites undergoing mRNA editing in plant mitochondria and chloroplasts. DC Shields KH Wolfe, Mol Biol Evol 1997 14 3 344 349 9066800
    • (1997) Mol Biol Evol , vol.14 , Issue.3 , pp. 344-349
    • Shields, D.C.1    Wolfe, K.H.2
  • 11
    • 3042803660 scopus 로고    scopus 로고
    • Rapid evolution of editing sites in a small non-essential plastid gene
    • 10.1093/nar/gkh695
    • Rapid evolution of editing sites in a small non-essential plastid gene. A Fiebig S Stegemann R Bock, Nucl Acids Res 2004 7 3615 3622 10.1093/nar/gkh695
    • (2004) Nucl Acids Res , vol.7 , pp. 3615-3622
    • Fiebig, A.1    Stegemann, S.2    Bock, R.3
  • 12
    • 51749104177 scopus 로고    scopus 로고
    • High Conservation of a 5' Element Required for RNA Editing of a C Target in Chloroplast psbE Transcripts
    • 10.1007/s00239-008-9101-9. 18696032
    • High Conservation of a 5' Element Required for RNA Editing of a C Target in Chloroplast psbE Transcripts. ML Hayes MR Hanson, J Mol Evol 2008 67 3 233 245 10.1007/s00239-008-9101-9 18696032
    • (2008) J Mol Evol , vol.67 , Issue.3 , pp. 233-245
    • Hayes, M.L.1    Hanson, M.R.2
  • 13
    • 34249938871 scopus 로고    scopus 로고
    • Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing
    • 10.1073/pnas.0700865104. 17483454
    • Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. K Okuda F Myouga R Motohashi K Shinozaki T Shikanai, Proc Natl Acad Sci USA 2007 104 19 8178 8183 10.1073/pnas.0700865104 17483454
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.19 , pp. 8178-8183
    • Okuda, K.1    Myouga, F.2    Motohashi, R.3    Shinozaki, K.4    Shikanai, T.5
  • 14
    • 12744253474 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
    • 10.1038/nature03229. 15662426
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. E Kotera M Tasaka T Shikanai, Nature 2005 433 7023 326 330 10.1038/nature03229 15662426
    • (2005) Nature , vol.433 , Issue.7023 , pp. 326-330
    • Kotera, E.1    Tasaka, M.2    Shikanai, T.3
  • 16
    • 64749105292 scopus 로고    scopus 로고
    • A DYW Domain-Containing Pentatricopeptide Repeat Protein Is Required for RNA Editing at Multiple Sites in Mitochondria of Arabidopsis thaliana
    • 10.1105/tpc.108.064535. 19252080
    • A DYW Domain-Containing Pentatricopeptide Repeat Protein Is Required for RNA Editing at Multiple Sites in Mitochondria of Arabidopsis thaliana. A Zehrmann D Verbitskiy JA van der Merwe A Brennicke M Takenaka, Plant Cell 2009 21 2 558 567 10.1105/tpc.108.064535 19252080
    • (2009) Plant Cell , vol.21 , Issue.2 , pp. 558-567
    • Zehrmann, A.1    Verbitskiy, D.2    Van Der Merwe, J.A.3    Brennicke, A.4    Takenaka, M.5
  • 17
    • 66449092805 scopus 로고    scopus 로고
    • A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript
    • 10.1261/rna.1533909. 19395655
    • A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. JC Robbins WP Heller MR Hanson, RNA 2009 15 6 1142 1153 10.1261/rna.1533909 19395655
    • (2009) RNA , vol.15 , Issue.6 , pp. 1142-1153
    • Robbins, J.C.1    Heller, W.P.2    Hanson, M.R.3
  • 18
    • 67650175499 scopus 로고    scopus 로고
    • LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis
    • 10.1104/pp.109.136812. 19448041
    • LPA66 Is Required for Editing psbF Chloroplast Transcripts in Arabidopsis. W Cai D Ji L Peng J Guo J Ma M Zou C Lu L Zhang, Plant Physiol 2009 150 1260 1271 10.1104/pp.109.136812 19448041
    • (2009) Plant Physiol , vol.150 , pp. 1260-1271
    • Cai, W.1    Ji, D.2    Peng, L.3    Guo, J.4    Ma, J.5    Zou, M.6    Lu, C.7    Zhang, L.8
  • 19
    • 63349084758 scopus 로고    scopus 로고
    • The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth
    • 10.1111/j.1365-313X.2008.03766.x
    • The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth. W Zhou Y Cheng A Yap AL Chateigner-Boutin E Delannoy K Hammani I Small J Huang, Plant J 2009 58 82 96 10.1111/j.1365-313X.2008.03766.x
    • (2009) Plant J , vol.58 , pp. 82-96
    • Zhou, W.1    Cheng, Y.2    Yap, A.3    Chateigner-Boutin, A.L.4    Delannoy, E.5    Hammani, K.6    Small, I.7    Huang, J.8
  • 21
    • 33645791446 scopus 로고    scopus 로고
    • Maintenance of plastid RNA editing activities independently of their target sites
    • 10.1038/sj.embor.7400619. 16415790
    • Maintenance of plastid RNA editing activities independently of their target sites. M Tillich P Poltnigg S Kushnir C Schmitz-Linneweber, EMBO Rep 2006 7 308 313 10.1038/sj.embor.7400619 16415790
    • (2006) EMBO Rep , vol.7 , pp. 308-313
    • Tillich, M.1    Poltnigg, P.2    Kushnir, S.3    Schmitz-Linneweber, C.4
  • 22
    • 38649104786 scopus 로고    scopus 로고
    • Faithful editing of a tomato-specific mRNA editing site in transgenic tobacco chloroplasts
    • 10.1261/rna.823508. 18065714
    • Faithful editing of a tomato-specific mRNA editing site in transgenic tobacco chloroplasts. D Karcher S Kahlau R Bock, RNA 2008 14 2 217 224 10.1261/rna.823508 18065714
    • (2008) RNA , vol.14 , Issue.2 , pp. 217-224
    • Karcher, D.1    Kahlau, S.2    Bock, R.3
  • 23
    • 0023478640 scopus 로고
    • The chloroplast tRNA(Lys) (UUU) gene from mustard (Sinapis alba) contains a class II intron potentially encoding for a maturase-related polypeptide
    • 10.1007/BF00355398. 2834093
    • The chloroplast tRNA(Lys) (UUU) gene from mustard (Sinapis alba) contains a class II intron potentially encoding for a maturase-related polypeptide. H Neuhaus G Link, Curr Genet 1987 11 251 257 10.1007/BF00355398 2834093
    • (1987) Curr Genet , vol.11 , pp. 251-257
    • Neuhaus, H.1    Link, G.2
  • 24
    • 0029411215 scopus 로고
    • Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana
    • 10.1007/BF00041163. 8541499
    • Transcription, splicing and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana. SC Ems CW Morden CK Dixon KH Wolfe CW dePamphilis JD Palmer, Plant Mol Biol 1995 29 4 721 733 10.1007/BF00041163 8541499
    • (1995) Plant Mol Biol , vol.29 , Issue.4 , pp. 721-733
    • Ems, S.C.1    Morden, C.W.2    Dixon, C.K.3    Wolfe, K.H.4    Depamphilis, C.W.5    Palmer, J.D.6
  • 25
    • 34548032178 scopus 로고    scopus 로고
    • Expression of matK: Functional and evolutionary implications
    • 10.3732/ajb.94.8.1402
    • Expression of matK: functional and evolutionary implications. MM Barthet KW Hilu, Am J Bot 2007 94 1402 1412 10.3732/ajb.94.8.1402
    • (2007) Am J Bot , vol.94 , pp. 1402-1412
    • Barthet, M.M.1    Hilu, K.W.2
  • 26
    • 33645779006 scopus 로고    scopus 로고
    • The plastid chromosome of maize (Zea mais): Update of the complete sequence and transcript editing sites
    • The plastid chromosome of maize (Zea mais): Update of the complete sequence and transcript editing sites. M Tillich C Schmitz-Linneweber RG Herrmann RM Maier, Maize Genet Corp News Letters 2001 75 42 44
    • (2001) Maize Genet Corp News Letters , vol.75 , pp. 42-44
    • Tillich, M.1    Schmitz-Linneweber, C.2    Herrmann, R.G.3    Maier, R.M.4
  • 29
    • 0036726451 scopus 로고    scopus 로고
    • The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: The role of RNA editing in generating divergence in the process of plant speciation
    • 12200487
    • The plastid chromosome of Atropa belladonna and its comparison with that of Nicotiana tabacum: the role of RNA editing in generating divergence in the process of plant speciation. C Schmitz-Linneweber R Regel TG Du H Hupfer RG Herrmann RM Maier, Mol Biol Evol 2002 19 9 1602 1612 12200487
    • (2002) Mol Biol Evol , vol.19 , Issue.9 , pp. 1602-1612
    • Schmitz-Linneweber, C.1    Regel, R.2    Du, T.G.3    Hupfer, H.4    Herrmann, R.G.5    Maier, R.M.6
  • 30
    • 11144332547 scopus 로고    scopus 로고
    • A systematic search for RNA editing sites in pea chloroplasts: An editing event causes diversification from the evolutionarily conserved amino acid sequence
    • 10.1093/pcp/pch191. 15574837
    • A systematic search for RNA editing sites in pea chloroplasts: an editing event causes diversification from the evolutionarily conserved amino acid sequence. M Inada T Sasaki M Yukawa T Tsudzuki M Sugiura, Plant Cell Physiol 2004 45 11 1615 1622 10.1093/pcp/pch191 15574837
    • (2004) Plant Cell Physiol , vol.45 , Issue.11 , pp. 1615-1622
    • Inada, M.1    Sasaki, T.2    Yukawa, M.3    Tsudzuki, T.4    Sugiura, M.5
  • 31
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • 10.1101/gr.849004. 15173120
    • WebLogo: a sequence logo generator. GE Crooks G Hon JM Chandonia SE Brenner, Genome Res 2004 14 6 1188 1190 10.1101/gr.849004 15173120
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 32
    • 33748803625 scopus 로고    scopus 로고
    • The evolution of chloroplast RNA editing
    • 10.1093/molbev/msl054. 16835291
    • The evolution of chloroplast RNA editing. M Tillich P Lehwark BR Morton UG Maier, Mol Biol Evol 2006 23 10 1912 1921 10.1093/molbev/msl054 16835291
    • (2006) Mol Biol Evol , vol.23 , Issue.10 , pp. 1912-1921
    • Tillich, M.1    Lehwark, P.2    Morton, B.R.3    Maier, U.G.4
  • 33
    • 33845672553 scopus 로고    scopus 로고
    • RNA editing has been lost in the mitochondrial cox3 and rps13 mRNAs in Asparagales
    • 10.1016/j.biochi.2006.09.011. 17092626
    • RNA editing has been lost in the mitochondrial cox3 and rps13 mRNAs in Asparagales. L Lopez E Picardi C Quagliariello, Biochimie 2007 89 1 159 167 10.1016/j.biochi.2006.09.011 17092626
    • (2007) Biochimie , vol.89 , Issue.1 , pp. 159-167
    • Lopez, L.1    Picardi, E.2    Quagliariello, C.3
  • 34
    • 7344254101 scopus 로고    scopus 로고
    • Deleterious mutation accumulation in organelle genomes
    • 10.1023/A:1017022522486. 9720269
    • Deleterious mutation accumulation in organelle genomes. M Lynch JL Blanchard, Genetica 1998 102-103 1-6 29 39 10.1023/A:1017022522486 9720269
    • (1998) Genetica , vol.102-103 , Issue.1-6 , pp. 29-39
    • Lynch, M.1    Blanchard, J.L.2
  • 35
    • 0347719413 scopus 로고    scopus 로고
    • A site-specific factor interacts directly with its cognate RNA editing site in chloroplast transcripts
    • 10.1073/pnas.0307163101. 14694196
    • A site-specific factor interacts directly with its cognate RNA editing site in chloroplast transcripts. T Miyamoto J Obokata M Sugiura, Proc Natl Acad Sci USA 2004 101 1 48 52 10.1073/pnas.0307163101 14694196
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.1 , pp. 48-52
    • Miyamoto, T.1    Obokata, J.2    Sugiura, M.3
  • 36
    • 43149104406 scopus 로고    scopus 로고
    • Cross-competition in editing of chloroplast RNA transcripts in vitro implicates sharing of trans-factors between different C targets
    • 10.1074/jbc.M709595200. 18192271
    • Cross-competition in editing of chloroplast RNA transcripts in vitro implicates sharing of trans-factors between different C targets. WP Heller ML Hayes MR Hanson, J Biol Chem 2008 283 12 7314 7319 10.1074/jbc.M709595200 18192271
    • (2008) J Biol Chem , vol.283 , Issue.12 , pp. 7314-7319
    • Heller, W.P.1    Hayes, M.L.2    Hanson, M.R.3
  • 37
    • 0035312612 scopus 로고    scopus 로고
    • A single alteration 20 nt 5' to an editing target inhibits chloroplast RNA editing in vivo.
    • 10.1093/nar/29.7.1507. 11266552
    • A single alteration 20 nt 5' to an editing target inhibits chloroplast RNA editing in vivo. ML Reed NM Peeters MR Hanson, Nucleic Acids Res 2001 29 7 1507 1513 10.1093/nar/29.7.1507 11266552
    • (2001) Nucleic Acids Res , vol.29 , Issue.7 , pp. 1507-1513
    • Reed, M.L.1    Peeters, N.M.2    Hanson, M.R.3
  • 38
    • 0033736511 scopus 로고    scopus 로고
    • Conservation of RNA editing between rice and maize plastids: Are most editing events dispensable?
    • 10.1007/s004380000295. 11129045
    • Conservation of RNA editing between rice and maize plastids: are most editing events dispensable? S Corneille K Lutz P Maliga, Mol Gen Genet 2000 264 4 419 424 10.1007/s004380000295 11129045
    • (2000) Mol Gen Genet , vol.264 , Issue.4 , pp. 419-424
    • Corneille, S.1    Lutz, K.2    Maliga, P.3
  • 39
    • 34848855562 scopus 로고    scopus 로고
    • A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons
    • 10.1093/nar/gkm640. 17726051
    • A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. AL Chateigner-Boutin I Small, Nucleic Acids Res 2007 35 17 114 10.1093/nar/gkm640 17726051
    • (2007) Nucleic Acids Res , vol.35 , Issue.17 , pp. 5114
    • Chateigner-Boutin, A.L.1    Small, I.2
  • 40
    • 0030657928 scopus 로고    scopus 로고
    • A heterologous maize rpoB editing site is recognized by transgenic tobacco chloroplasts
    • 9372927
    • A heterologous maize rpoB editing site is recognized by transgenic tobacco chloroplasts. ML Reed MR Hanson, Mol Cell Biol 1997 17 12 6948 6952 9372927
    • (1997) Mol Cell Biol , vol.17 , Issue.12 , pp. 6948-6952
    • Reed, M.L.1    Hanson, M.R.2
  • 41
    • 1442357095 scopus 로고    scopus 로고
    • RNA isolation from highly viscous samples rich in polyphenols and polysaccharides
    • 10.1007/BF02772130
    • RNA isolation from highly viscous samples rich in polyphenols and polysaccharides. Y Zeng T Yang, Plant Mol Biol Rep 2002 20 417a 417e 10.1007/BF02772130
    • (2002) Plant Mol Biol Rep , vol.20
    • Zeng, Y.1    Yang, T.2
  • 42
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequnce alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673. 7984417
    • Clustal W: Improving the sensitivity of progressive multiple sequnce alignment through sequence weighting, position-specific gap penalties and weight matrix choice. J Thompson D Higgins T Gibson, Nucl Acids Res 1994 22 4673 4680 10.1093/nar/22.22.4673 7984417
    • (1994) Nucl Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3


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