메뉴 건너뛰기




Volumn 178, Issue 2, 2012, Pages 165-176

Computational separation of conformational heterogeneity using cryo-electron tomography and 3D sub-volume averaging

Author keywords

Dynamic molecular complexes; Membrane proteins; Sub volume averaging; Viral glycoproteins

Indexed keywords

VIRUS ENVELOPE PROTEIN; VIRUS GLYCOPROTEIN; VIRUS VECTOR;

EID: 84860584093     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2012.01.004     Document Type: Article
Times cited : (19)

References (33)
  • 1
    • 69249115197 scopus 로고    scopus 로고
    • Membrane protein structure determination using cryo-electron tomography and 3D image averaging
    • Bartesaghi A., Subramaniam S. Membrane protein structure determination using cryo-electron tomography and 3D image averaging. Curr. Opin. Struc. Biol. 2009, 19:402-407.
    • (2009) Curr. Opin. Struc. Biol. , vol.19 , pp. 402-407
    • Bartesaghi, A.1    Subramaniam, S.2
  • 2
    • 44449179947 scopus 로고    scopus 로고
    • Classification and 3D averaging with missing wedge correction in biological electron tomography
    • Bartesaghi A., Sprechmann P., Liu J., Randall G., Sapiro G., Subramaniam S. Classification and 3D averaging with missing wedge correction in biological electron tomography. J. Struct. Biol. 2008, 162:436-450.
    • (2008) J. Struct. Biol. , vol.162 , pp. 436-450
    • Bartesaghi, A.1    Sprechmann, P.2    Liu, J.3    Randall, G.4    Sapiro, G.5    Subramaniam, S.6
  • 3
    • 72449161758 scopus 로고    scopus 로고
    • Visualizing cellular processes at the molecular level by cryo-electron tomography
    • Ben-Harush K., Maimon T., Patla I., Villa E., Medalia O. Visualizing cellular processes at the molecular level by cryo-electron tomography. J. Cell Sci. 2010, 123:7-12.
    • (2010) J. Cell Sci. , vol.123 , pp. 7-12
    • Ben-Harush, K.1    Maimon, T.2    Patla, I.3    Villa, E.4    Medalia, O.5
  • 4
    • 41549137007 scopus 로고    scopus 로고
    • Three-dimensional imaging of the highly bent architecture of Bdellovibrio bacteriovorus by using cryo-electron tomography
    • Borgnia M.J., Subramaniam S., Milne J.L.S. Three-dimensional imaging of the highly bent architecture of Bdellovibrio bacteriovorus by using cryo-electron tomography. J. Bacteriol. 2008, 190:2588-2596.
    • (2008) J. Bacteriol. , vol.190 , pp. 2588-2596
    • Borgnia, M.J.1    Subramaniam, S.2    Milne, J.L.S.3
  • 5
    • 77956006893 scopus 로고    scopus 로고
    • The three-dimensional organization of polyribosomes in intact human cells
    • Brandt F., Carlson L.A., Hartl F.U., Baumeister W., Grunewald K. The three-dimensional organization of polyribosomes in intact human cells. Mol. Cell 2010, 39:560-569.
    • (2010) Mol. Cell , vol.39 , pp. 560-569
    • Brandt, F.1    Carlson, L.A.2    Hartl, F.U.3    Baumeister, W.4    Grunewald, K.5
  • 9
    • 77954650144 scopus 로고    scopus 로고
    • Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy
    • Fischer N., Konevega A.L., Wintermeyer W., Rodnina M.V., Stark H. Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy. Nature 2010, 466:329-333.
    • (2010) Nature , vol.466 , pp. 329-333
    • Fischer, N.1    Konevega, A.L.2    Wintermeyer, W.3    Rodnina, M.V.4    Stark, H.5
  • 10
    • 40649128324 scopus 로고    scopus 로고
    • Classification of cryo-electron sub-tomograms using constrained correlation
    • Förster F., Pruggnaller S., Seybert A., Frangakis A.S. Classification of cryo-electron sub-tomograms using constrained correlation. J. Struct. Biol. 2008, 161:276-286.
    • (2008) J. Struct. Biol. , vol.161 , pp. 276-286
    • Förster, F.1    Pruggnaller, S.2    Seybert, A.3    Frangakis, A.S.4
  • 14
    • 3142655417 scopus 로고    scopus 로고
    • Realizing the potential of electron cryo-microscopy
    • Henderson R. Realizing the potential of electron cryo-microscopy. Q. Rev. Biophys. 2004, 37:3-13.
    • (2004) Q. Rev. Biophys. , vol.37 , pp. 3-13
    • Henderson, R.1
  • 15
    • 79960900012 scopus 로고    scopus 로고
    • Clustering and variance maps for cryo-electron tomography using wedge-masked differences
    • Heumann, J.M., Hoenger, A., Mastronarde, D.N., 2011. Clustering and variance maps for cryo-electron tomography using wedge-masked differences. J. Struct. Biol. 175, 288-299.
    • (2011) J. Struct. Biol. , vol.175 , pp. 288-299
    • Heumann, J.M.1    Hoenger, A.2    Mastronarde, D.N.3
  • 17
    • 0028147508 scopus 로고
    • Atomic model of plant light-harvesting complex by electron crystallography
    • Kuhlbrandt W., Wang D.N., Fujiyoshi Y. Atomic model of plant light-harvesting complex by electron crystallography. Nature 1994, 367:614-621.
    • (1994) Nature , vol.367 , pp. 614-621
    • Kuhlbrandt, W.1    Wang, D.N.2    Fujiyoshi, Y.3
  • 18
    • 12344274281 scopus 로고    scopus 로고
    • Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum
    • Kurner J., Frangakis A.S., Baumeister W. Cryo-electron tomography reveals the cytoskeletal structure of Spiroplasma melliferum. Science 2005, 307:436-438.
    • (2005) Science , vol.307 , pp. 436-438
    • Kurner, J.1    Frangakis, A.S.2    Baumeister, W.3
  • 21
    • 67749131110 scopus 로고    scopus 로고
    • Paramyxovirus ultrastructure and genome packaging: cryo-electron tomography of sendai virus
    • Loney C., Mottet-Osman G., Roux L., Bhella D. Paramyxovirus ultrastructure and genome packaging: cryo-electron tomography of sendai virus. J. Virol. 2009, 83:8191-8197.
    • (2009) J. Virol. , vol.83 , pp. 8191-8197
    • Loney, C.1    Mottet-Osman, G.2    Roux, L.3    Bhella, D.4
  • 22
    • 0013371834 scopus 로고
    • Some methods for classification and analysis of multivariate observations, Proceedings of the Berkeley Symposium on Mathematical Statistics and Probability
    • University of California Press, Berkeley
    • MacQueen, J., 1967. Some methods for classification and analysis of multivariate observations, Proceedings of the Berkeley Symposium on Mathematical Statistics and Probability. University of California Press, Berkeley (pp. 281-297).
    • (1967) , pp. 281-297
    • MacQueen, J.1
  • 23
    • 33748295677 scopus 로고    scopus 로고
    • In situ structure of the complete Treponema primitia flagellar motor
    • Murphy G.E., Leadbetter J.R., Jensen G.J. In situ structure of the complete Treponema primitia flagellar motor. Nature 2006, 442:1062-1064.
    • (2006) Nature , vol.442 , pp. 1062-1064
    • Murphy, G.E.1    Leadbetter, J.R.2    Jensen, G.J.3
  • 25
    • 0033520347 scopus 로고    scopus 로고
    • Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography
    • Ringler P., Borgnia M.J., Stahlberg H., Maloney P.C., Agre P., Engel A. Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography. J. Mol. Biol. 1999, 291:1181-1190.
    • (1999) J. Mol. Biol. , vol.291 , pp. 1181-1190
    • Ringler, P.1    Borgnia, M.J.2    Stahlberg, H.3    Maloney, P.C.4    Agre, P.5    Engel, A.6
  • 27
    • 0031423486 scopus 로고    scopus 로고
    • Electron tomography of single ice-embedded macromolecules: three-dimensional alignment and classification
    • Walz J., Typke D., Nitsch M., Koster A.J., Hegerl R., Baumeister W. Electron tomography of single ice-embedded macromolecules: three-dimensional alignment and classification. J. Struct. Biol. 1997, 120:387-395.
    • (1997) J. Struct. Biol. , vol.120 , pp. 387-395
    • Walz, J.1    Typke, D.2    Nitsch, M.3    Koster, A.J.4    Hegerl, R.5    Baumeister, W.6
  • 29
    • 81255213876 scopus 로고    scopus 로고
    • Three-dimensional structures of soluble CD4-bound states of trimeric simian immunodeficiency virus envelope glycoproteins determined by using cryo-electron tomography
    • White T.A., Bartesaghi A., Borgnia M.J., de la Cruz M.J.V., Nandwani R., Hoxie J.A., Bess J.W., Lifson J.D., Milne J.L., Subramaniam S. Three-dimensional structures of soluble CD4-bound states of trimeric simian immunodeficiency virus envelope glycoproteins determined by using cryo-electron tomography. J Virol. 2011, 85:12114-12123.
    • (2011) J Virol. , vol.85 , pp. 12114-12123
    • White, T.A.1    Bartesaghi, A.2    Borgnia, M.J.3    de la Cruz, M.J.V.4    Nandwani, R.5    Hoxie, J.A.6    Bess, J.W.7    Lifson, J.D.8    Milne, J.L.9    Subramaniam, S.10
  • 30
    • 0033166855 scopus 로고    scopus 로고
    • Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle
    • Winkler H., Taylor K.A. Multivariate statistical analysis of three-dimensional cross-bridge motifs in insect flight muscle. Ultramicroscopy 1999, 77:141-152.
    • (1999) Ultramicroscopy , vol.77 , pp. 141-152
    • Winkler, H.1    Taylor, K.A.2
  • 31
    • 0042238051 scopus 로고    scopus 로고
    • Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
    • Yonekura K., Maki-Yonekura S., Namba K. Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy. Nature 2003, 424:643-650.
    • (2003) Nature , vol.424 , pp. 643-650
    • Yonekura, K.1    Maki-Yonekura, S.2    Namba, K.3
  • 32
    • 79955673732 scopus 로고    scopus 로고
    • Classification of electron sub-tomograms with neural networks and its application to template-matching
    • Yu Z., Frangakis A.S. Classification of electron sub-tomograms with neural networks and its application to template-matching. J. Struct. Biol. 2011, 174:494-504.
    • (2011) J. Struct. Biol. , vol.174 , pp. 494-504
    • Yu, Z.1    Frangakis, A.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.