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Volumn 174, Issue 3, 2011, Pages 494-504

Classification of electron sub-tomograms with neural networks and its application to template-matching

Author keywords

Cryo electron tomography; Image processing; Sub tomogram classification

Indexed keywords

ARTICLE; ARTIFICIAL NEURAL NETWORK; CLASSIFICATION ALGORITHM; ELECTRON TOMOGRAPHY; IMAGE PROCESSING; IMAGE RECONSTRUCTION; INTERMETHOD COMPARISON; KERNEL DENSITY ESTIMATOR SELF ORGANIZING MAP; MYCOPLASMA PNEUMONIA; NONHUMAN; PRIORITY JOURNAL; SPIROPLASMA; VALIDATION PROCESS;

EID: 79955673732     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2011.02.009     Document Type: Article
Times cited : (25)

References (29)
  • 1
    • 36849060240 scopus 로고    scopus 로고
    • The molecular architecture of cadherins in native epidermal desmosomes
    • Al-Amoudi A., Diez D.C., Betts M.J., Frangakis A.S. The molecular architecture of cadherins in native epidermal desmosomes. Nature 2007, 450:832-837.
    • (2007) Nature , vol.450 , pp. 832-837
    • Al-Amoudi, A.1    Diez, D.C.2    Betts, M.J.3    Frangakis, A.S.4
  • 2
    • 44449179947 scopus 로고    scopus 로고
    • Classification and 3D averaging with missing wedge correction in biological electron tomography
    • Bartesaghi A., Sprechmann P., Liu J., Randall G., Sapiro G., Subramaniam S. Classification and 3D averaging with missing wedge correction in biological electron tomography. J. Struct. Biol. 2008, 162:436-450.
    • (2008) J. Struct. Biol. , vol.162 , pp. 436-450
    • Bartesaghi, A.1    Sprechmann, P.2    Liu, J.3    Randall, G.4    Sapiro, G.5    Subramaniam, S.6
  • 6
    • 0032478545 scopus 로고    scopus 로고
    • Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
    • Ditzel L., Lowe J., Stock D., Stetter K.O., Huber H., Huber R., Steinbacher S. Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell 1998, 93:125-138.
    • (1998) Cell , vol.93 , pp. 125-138
    • Ditzel, L.1    Lowe, J.2    Stock, D.3    Stetter, K.O.4    Huber, H.5    Huber, R.6    Steinbacher, S.7
  • 7
    • 40649128324 scopus 로고    scopus 로고
    • Classification of cryo-electron sub-tomograms using constrained correlation
    • Foerster F., Pruggnaller S., Seybert A., Frangakis A.S. Classification of cryo-electron sub-tomograms using constrained correlation. J. Struct. Biol. 2008, 161:276-286.
    • (2008) J. Struct. Biol. , vol.161 , pp. 276-286
    • Foerster, F.1    Pruggnaller, S.2    Seybert, A.3    Frangakis, A.S.4
  • 9
    • 33645306591 scopus 로고    scopus 로고
    • Three-dimensional structure of Mycoplasma pneumoniae's attachment organelle and a model for its role in gliding motility
    • Henderson G.P., Jensen G.J. Three-dimensional structure of Mycoplasma pneumoniae's attachment organelle and a model for its role in gliding motility. Mol. Microbiol. 2006, 60:376-385.
    • (2006) Mol. Microbiol. , vol.60 , pp. 376-385
    • Henderson, G.P.1    Jensen, G.J.2
  • 10
    • 12344274281 scopus 로고    scopus 로고
    • Cryo-Electron Tomography Reveals the Cytoskeletal Structure of Spiroplasma melliferum
    • Kuerner J., Frangakis A.S., Baumeister W. Cryo-Electron Tomography Reveals the Cytoskeletal Structure of Spiroplasma melliferum. Science 2005, 307:436-438.
    • (2005) Science , vol.307 , pp. 436-438
    • Kuerner, J.1    Frangakis, A.S.2    Baumeister, W.3
  • 12
    • 66349121016 scopus 로고    scopus 로고
    • Electron cryotomography: a new view into microbial ultrastructure
    • Li Z., Jensen G.J. Electron cryotomography: a new view into microbial ultrastructure. Curr. Opin. Microbiol. 2009, 12:333-340.
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 333-340
    • Li, Z.1    Jensen, G.J.2
  • 13
    • 0028363358 scopus 로고
    • Pattern recognition and classification of images of biological macromolecules using artificial neural networks
    • Marabini R., Carazo J.M. Pattern recognition and classification of images of biological macromolecules using artificial neural networks. Biophys. J. 1994, 66:1804-1814.
    • (1994) Biophys. J. , vol.66 , pp. 1804-1814
    • Marabini, R.1    Carazo, J.M.2
  • 14
    • 69249213558 scopus 로고    scopus 로고
    • Cryo-electron tomography of bacteria: progress, challenges and future prospects
    • Milne J.L., Subramaniam S. Cryo-electron tomography of bacteria: progress, challenges and future prospects. Nat. Rev. Microbiol. 2009, 7:666-675.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 666-675
    • Milne, J.L.1    Subramaniam, S.2
  • 20
    • 51549110953 scopus 로고    scopus 로고
    • A visualization and segmentation toolbox for electron microscopy
    • Pruggnaller S., Mayr M., Frangakis A.S. A visualization and segmentation toolbox for electron microscopy. J. Struct. Biol. 2008, 164:161-165.
    • (2008) J. Struct. Biol. , vol.164 , pp. 161-165
    • Pruggnaller, S.1    Mayr, M.2    Frangakis, A.S.3
  • 21
    • 71049139404 scopus 로고    scopus 로고
    • Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization
    • Scheres S.H., Melero R., Valle M., Carazo J.M. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure 2009, 17:1563-1572.
    • (2009) Structure , vol.17 , pp. 1563-1572
    • Scheres, S.H.1    Melero, R.2    Valle, M.3    Carazo, J.M.4
  • 22
    • 63649084795 scopus 로고    scopus 로고
    • Maximum likelihood refinement of electron microscopy data with normalization errors
    • Scheres S.H., Valle M., Grob P., Nogales E., Carazo J.M. Maximum likelihood refinement of electron microscopy data with normalization errors. J. Struct. Biol. 2009, 166:234-240.
    • (2009) J. Struct. Biol. , vol.166 , pp. 234-240
    • Scheres, S.H.1    Valle, M.2    Grob, P.3    Nogales, E.4    Carazo, J.M.5
  • 23
    • 33750512775 scopus 로고    scopus 로고
    • Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography
    • Seybert A., Herrmann R., Frangakis A.S. Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography. J. Struct. Biol. 2006, 156:42-54.
    • (2006) J. Struct. Biol. , vol.156 , pp. 42-54
    • Seybert, A.1    Herrmann, R.2    Frangakis, A.S.3
  • 24
    • 0037404096 scopus 로고    scopus 로고
    • An approach to examining model dependence in EM reconstructions using cross-validation
    • Shaikh T.R., Hegerl R., Frank J. An approach to examining model dependence in EM reconstructions using cross-validation. J. Struct. Biol. 2003, 142:301-310.
    • (2003) J. Struct. Biol. , vol.142 , pp. 301-310
    • Shaikh, T.R.1    Hegerl, R.2    Frank, J.3
  • 25
    • 0031704540 scopus 로고    scopus 로고
    • A maximum-likelihood approach to single-particle image refinement
    • Sigworth F.J. A maximum-likelihood approach to single-particle image refinement. J. Struct. Biol. 1998, 122:328-339.
    • (1998) J. Struct. Biol. , vol.122 , pp. 328-339
    • Sigworth, F.J.1
  • 28
    • 58349085125 scopus 로고    scopus 로고
    • Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes
    • Winkler H., Zhu P., Liu J., Ye F., Roux K.H., Taylor K.A. Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes. J. Struct. Biol. 2009, 165:64-77.
    • (2009) J. Struct. Biol. , vol.165 , pp. 64-77
    • Winkler, H.1    Zhu, P.2    Liu, J.3    Ye, F.4    Roux, K.H.5    Taylor, K.A.6
  • 29
    • 2942608087 scopus 로고    scopus 로고
    • An improved strategy for automated electron microscopic tomography
    • Zheng Q.S., Braunfeld M.B., Sedat J.W., Agard D.A. An improved strategy for automated electron microscopic tomography. J. Struct. Biol. 2004, 147:91-101.
    • (2004) J. Struct. Biol. , vol.147 , pp. 91-101
    • Zheng, Q.S.1    Braunfeld, M.B.2    Sedat, J.W.3    Agard, D.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.