메뉴 건너뛰기




Volumn 161, Issue 3, 2008, Pages 276-286

Classification of cryo-electron sub-tomograms using constrained correlation

Author keywords

Classification; Correlation; Electron tomography; k Means; Multivariate statistical analysis

Indexed keywords

CHAPERONE;

EID: 40649128324     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2007.07.006     Document Type: Article
Times cited : (145)

References (38)
  • 1
    • 84975624414 scopus 로고
    • Classification of image data in conjugate representation spaces
    • Borland L., and van Heel M. Classification of image data in conjugate representation spaces. J. Opt. Soc. Am. A 7 (1990) 601-610
    • (1990) J. Opt. Soc. Am. A , vol.7 , pp. 601-610
    • Borland, L.1    van Heel, M.2
  • 2
    • 0032478545 scopus 로고    scopus 로고
    • Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
    • Ditzel L., Lowe J., Stock D., Stetter K.O., Huber H., Huber R., and Steinbacher S. Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell 93 (1998) 125-138
    • (1998) Cell , vol.93 , pp. 125-138
    • Ditzel, L.1    Lowe, J.2    Stock, D.3    Stetter, K.O.4    Huber, H.5    Huber, R.6    Steinbacher, S.7
  • 3
    • 40649125916 scopus 로고    scopus 로고
    • Structure determination in situ by averaging of tomograms
    • McIntosh J.R. (Ed), Elsevier
    • Förster F., and Hegerl R. Structure determination in situ by averaging of tomograms. In: McIntosh J.R. (Ed). Cellular Electron Microscopy (2006), Elsevier
    • (2006) Cellular Electron Microscopy
    • Förster, F.1    Hegerl, R.2
  • 4
    • 16344390563 scopus 로고    scopus 로고
    • Retrovirus envelope protein complex structure in situ determined by cryo-electron tomography
    • Förster F., Medalia O., Zauberman N., Baumeister W., and Fass D. Retrovirus envelope protein complex structure in situ determined by cryo-electron tomography. Proc. Natl. Acad. Sci. USA 102 (2005) 4729-4734
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4729-4734
    • Förster, F.1    Medalia, O.2    Zauberman, N.3    Baumeister, W.4    Fass, D.5
  • 5
    • 77957285896 scopus 로고    scopus 로고
    • Motif search in electron tomography
    • Frank J. (Ed), Springer Verlag, New York
    • Frangakis A.S., and Rath B.K. Motif search in electron tomography. In: Frank J. (Ed). Electron Tomography (2006), Springer Verlag, New York
    • (2006) Electron Tomography
    • Frangakis, A.S.1    Rath, B.K.2
  • 8
    • 0036089703 scopus 로고    scopus 로고
    • Single-particle imaging of macromolecules by cryo-electron microscopy
    • Frank J. Single-particle imaging of macromolecules by cryo-electron microscopy. Annu. Rev. Biophys. Biomol. Struct. 31 (2002) 303-319
    • (2002) Annu. Rev. Biophys. Biomol. Struct. , vol.31 , pp. 303-319
    • Frank, J.1
  • 10
    • 0020484108 scopus 로고
    • Correspondence analysis of aligned images of biological particles
    • Frank J., and van Heel M. Correspondence analysis of aligned images of biological particles. J. Mol. Biol. 161 (1982) 134-137
    • (1982) J. Mol. Biol. , vol.161 , pp. 134-137
    • Frank, J.1    van Heel, M.2
  • 12
    • 0029879294 scopus 로고    scopus 로고
    • The EM program package: A platform for image processing in biological electron microscopy
    • Hegerl R. The EM program package: A platform for image processing in biological electron microscopy. J. Struct. Biol. 116 (1996) 30-34
    • (1996) J. Struct. Biol. , vol.116 , pp. 30-34
    • Hegerl, R.1
  • 13
    • 0014563924 scopus 로고
    • Das Endlichkeitspostulat und das Interpolationstheorem der dreidimensionalen elektronenmikroskopischen Analyse aperiodischer Strukturen
    • Hoppe W. Das Endlichkeitspostulat und das Interpolationstheorem der dreidimensionalen elektronenmikroskopischen Analyse aperiodischer Strukturen. Optik 29 (1969) 617-621
    • (1969) Optik , vol.29 , pp. 617-621
    • Hoppe, W.1
  • 14
    • 0014129195 scopus 로고
    • Hierarchical clustering schemes
    • Johnson S.C. Hierarchical clustering schemes. Psychometrika 2 (1967) 241-254
    • (1967) Psychometrika , vol.2 , pp. 241-254
    • Johnson, S.C.1
  • 15
    • 14844330221 scopus 로고    scopus 로고
    • Structural Studies by Electron Tomography: From Cells to Molecules
    • Lucic V., Förster F., and Baumeister W. Structural Studies by Electron Tomography: From Cells to Molecules. Annu. Rev. Biochem. 74 (2005) 833-865
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 833-865
    • Lucic, V.1    Förster, F.2    Baumeister, W.3
  • 16
    • 0001457509 scopus 로고
    • Some methods for classification and analysis of multivariate observations
    • University of California Press, Berkeley, CA
    • MacQueen J. Some methods for classification and analysis of multivariate observations. Proceedings of 5-th Berkeley Symposium on Mathematical Statistics and Probability (1967), University of California Press, Berkeley, CA 281-297
    • (1967) Proceedings of 5-th Berkeley Symposium on Mathematical Statistics and Probability , pp. 281-297
    • MacQueen, J.1
  • 17
    • 11844305068 scopus 로고    scopus 로고
    • New views of cells in 3D: an introduction to electron tomography
    • McIntosh R., Nicastro D., and Mastronarde D. New views of cells in 3D: an introduction to electron tomography. Trends Cell Biol. 15 (2005) 43-51
    • (2005) Trends Cell Biol. , vol.15 , pp. 43-51
    • McIntosh, R.1    Nicastro, D.2    Mastronarde, D.3
  • 18
    • 0037044862 scopus 로고    scopus 로고
    • Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography
    • Medalia O., Weber I., Frangakis A.S., Nicastro D., Gerisch G., and Baumeister W. Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Science 298 (2002) 1209-1213
    • (2002) Science , vol.298 , pp. 1209-1213
    • Medalia, O.1    Weber, I.2    Frangakis, A.S.3    Nicastro, D.4    Gerisch, G.5    Baumeister, W.6
  • 19
    • 33748295677 scopus 로고    scopus 로고
    • In situ structure of the complete Treponema primitia flagellar motor
    • (Epub 2006 August 2)
    • Murphy G.E., Leadbetter J.R., and Jensen G.J. In situ structure of the complete Treponema primitia flagellar motor. Nature 442 (2006) 1062-1064 (Epub 2006 August 2)
    • (2006) Nature , vol.442 , pp. 1062-1064
    • Murphy, G.E.1    Leadbetter, J.R.2    Jensen, G.J.3
  • 23
    • 0142059303 scopus 로고    scopus 로고
    • Topology representing network enables highly accurate classification of protein images taken by cryo electron-microscope without masking
    • Ogura T., Iwasaki K., and Sato C. Topology representing network enables highly accurate classification of protein images taken by cryo electron-microscope without masking. J. Struct. Biol. 143 (2003) 185-200
    • (2003) J. Struct. Biol. , vol.143 , pp. 185-200
    • Ogura, T.1    Iwasaki, K.2    Sato, C.3
  • 24
    • 33750527990 scopus 로고    scopus 로고
    • Mapping 70S ribosomes in intact cells by cryo-electron tomography and pattern recognition
    • Ortiz J., Förster F., Kurner J., Linaroudis A., and Baumeister W. Mapping 70S ribosomes in intact cells by cryo-electron tomography and pattern recognition. J. Struct. Biol. 156 (2006) 334-341
    • (2006) J. Struct. Biol. , vol.156 , pp. 334-341
    • Ortiz, J.1    Förster, F.2    Kurner, J.3    Linaroudis, A.4    Baumeister, W.5
  • 26
    • 0002580515 scopus 로고
    • Weighted back-projection methods
    • Frank J. (Ed), Plenum Press, New York
    • Radermacher M. Weighted back-projection methods. In: Frank J. (Ed). Electron Tomography (1992), Plenum Press, New York 91-115
    • (1992) Electron Tomography , pp. 91-115
    • Radermacher, M.1
  • 27
    • 0344120722 scopus 로고    scopus 로고
    • Fast 3D motif search of EM density maps using a locally normalized cross-correlation function
    • Rath B.K., Hegerl R., Leith A., Shaikh T.R., Wagenknecht T., and Frank J. Fast 3D motif search of EM density maps using a locally normalized cross-correlation function. J. Struct. Biol. 144 (2003) 95-103
    • (2003) J. Struct. Biol. , vol.144 , pp. 95-103
    • Rath, B.K.1    Hegerl, R.2    Leith, A.3    Shaikh, T.R.4    Wagenknecht, T.5    Frank, J.6
  • 28
    • 33845939047 scopus 로고    scopus 로고
    • Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
    • (Epub 2006 December 10)
    • Scheres S.H., Gao H., Valle M., Herman G.T., Eggermont P.P., Frank J., and Carazo J.M. Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization. Nat. Methods 4 (2007) 27-29 (Epub 2006 December 10)
    • (2007) Nat. Methods , vol.4 , pp. 27-29
    • Scheres, S.H.1    Gao, H.2    Valle, M.3    Herman, G.T.4    Eggermont, P.P.5    Frank, J.6    Carazo, J.M.7
  • 30
    • 0023102907 scopus 로고
    • Angular reconstitution: a posteriori assignment of projection directions for 3D reconstructions
    • van Heel M. Angular reconstitution: a posteriori assignment of projection directions for 3D reconstructions. Ultramicroscopy 21 (1987) 111-124
    • (1987) Ultramicroscopy , vol.21 , pp. 111-124
    • van Heel, M.1
  • 31
    • 0019728717 scopus 로고
    • Use of multivariate statistics in analysing the images of biological macromolecules
    • van Heel M., and Frank J. Use of multivariate statistics in analysing the images of biological macromolecules. Ultramicroscopy 6 (1981) 187-194
    • (1981) Ultramicroscopy , vol.6 , pp. 187-194
    • van Heel, M.1    Frank, J.2
  • 33
    • 0031423486 scopus 로고    scopus 로고
    • Electron tomography of single ice-embedded macromolecules: three-dimensional alignment and classification
    • Walz J., Typke D., Nitsch M., Koster A.J., Hegerl R., and Baumeister W. Electron tomography of single ice-embedded macromolecules: three-dimensional alignment and classification. J. Struct. Biol. 120 (1997) 387-395
    • (1997) J. Struct. Biol. , vol.120 , pp. 387-395
    • Walz, J.1    Typke, D.2    Nitsch, M.3    Koster, A.J.4    Hegerl, R.5    Baumeister, W.6
  • 34
    • 33845310367 scopus 로고    scopus 로고
    • 3D reconstruction and processing of volumetric data in cryo-electron tomography
    • (Epub 2006 August 11)
    • Winkler H. 3D reconstruction and processing of volumetric data in cryo-electron tomography. J. Struct. Biol. 157 (2007) 126-137 (Epub 2006 August 11)
    • (2007) J. Struct. Biol. , vol.157 , pp. 126-137
    • Winkler, H.1
  • 35
    • 0030870719 scopus 로고    scopus 로고
    • The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex
    • Xu Z., Horwich A.L., and Sigler P.B. The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex. Nature 388 (1997) 741-750
    • (1997) Nature , vol.388 , pp. 741-750
    • Xu, Z.1    Horwich, A.L.2    Sigler, P.B.3
  • 36
    • 33748038359 scopus 로고    scopus 로고
    • Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ
    • Zanetti G., Briggs J.A., Grunewald K., Sattentau Q.J., and Fuller S.D. Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ. PLoS Pathog. 2 (2006) e83
    • (2006) PLoS Pathog. , vol.2
    • Zanetti, G.1    Briggs, J.A.2    Grunewald, K.3    Sattentau, Q.J.4    Fuller, S.D.5
  • 37
    • 2942608087 scopus 로고    scopus 로고
    • An improved strategy for automated electron microscopic tomography
    • Zheng Q.S., Braunfeld M.B., Sedat J.W., and Agard D.A. An improved strategy for automated electron microscopic tomography. J. Struct. Biol. 147 (2004) 91-101
    • (2004) J. Struct. Biol. , vol.147 , pp. 91-101
    • Zheng, Q.S.1    Braunfeld, M.B.2    Sedat, J.W.3    Agard, D.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.