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Volumn , Issue , 2011, Pages 7-14

Beyond biology: Designing a new mechanism for self-replication and evolution at the nanoscale

Author keywords

Nanoscale systems; Self replicating molecular machines

Indexed keywords

CHEMICAL INFORMATION; CHEMICAL SEQUENCES; DNA NANOTECHNOLOGY; MOLECULAR MACHINES; NANO SCALE; NANO-SCALE SYSTEM; NEW FORMS; NEW MECHANISMS; REPLICATION MACHINERY; SELF-REPLICATIONS;

EID: 84860408502     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/2001576.2001578     Document Type: Conference Paper
Times cited : (1)

References (48)
  • 2
    • 0001270261 scopus 로고    scopus 로고
    • Design by directed evolution
    • F. H. Arnold. Design by directed evolution. Accounts of Chemical Research, 31:125-131, 1998. (Pubitemid 128473641)
    • (1998) Accounts of Chemical Research , vol.31 , Issue.3 , pp. 125-131
    • Arnold, F.H.1
  • 3
    • 30644470156 scopus 로고    scopus 로고
    • Two computational primitives for algorithmic self-assembly: Copying and counting
    • DOI 10.1021/nl052038l
    • R. D. Barish, P. W. K. Rothemund, and E. Winfree. Two computational primitives for algorithmic self-assembly: Copying and counting. Nano Lett., 5:2586-2592, 2005. (Pubitemid 43088917)
    • (2005) Nano Letters , vol.5 , Issue.12 , pp. 2586-2592
    • Barish, R.D.1    Rothemund, P.W.K.2    Winfree, E.3
  • 4
    • 65549116876 scopus 로고    scopus 로고
    • An information-bearing seed for nucleating algorithmic self-assembly
    • R. D. Barish, R. Schulman, P. W. K. Rothemund, and E. Winfree. An information-bearing seed for nucleating algorithmic self-assembly. P. Natl. Acad. Sci., 106(15):6054-6059, 2009.
    • (2009) P. Natl. Acad. Sci. , vol.106 , Issue.15 , pp. 6054-6059
    • Barish, R.D.1    Schulman, R.2    Rothemund, P.W.K.3    Winfree, E.4
  • 5
    • 34249983213 scopus 로고    scopus 로고
    • DNA nanomachines
    • DOI 10.1038/nnano.2007.104, PII NNANO2007104
    • J. Bath and A. J. Turberfield. DNA nanomachines. Nat. Nanotechnol., 2:275-284, 2007. (Pubitemid 46882966)
    • (2007) Nature Nanotechnology , vol.2 , Issue.5 , pp. 275-284
    • Bath, J.1    Turberfield, A.J.2
  • 6
    • 0003359740 scopus 로고
    • The undecidability of the domino problem
    • R. Berger. The undecidability of the domino problem. Memoirs of the AMS, 66:1-72, 1966.
    • (1966) Memoirs of the AMS , vol.66 , pp. 1-72
    • Berger, R.1
  • 7
    • 0019873325 scopus 로고
    • Kinetic analysis of template-instructed and de novo RNA synthesis by Qβ replicase
    • C. K. Biebricher, M. Eigen, and R. Luce. Kinetic analysis of template-instructed and de novo RNA synthesis by Qβ replicase. J. Mol. Biol., 148:391-410, 1981.
    • (1981) J. Mol. Biol. , vol.148 , pp. 391-410
    • Biebricher, C.K.1    Eigen, M.2    Luce, R.3
  • 9
    • 0013858596 scopus 로고
    • The origin of life and the nature of the primitive gene
    • A. G. Cairns-Smith. The origin of life and the nature of the primitive gene. J. Theor. Biol., 10:53-88, 1966.
    • (1966) J. Theor. Biol. , vol.10 , pp. 53-88
    • Cairns-Smith, A.G.1
  • 10
    • 0004607863 scopus 로고
    • The chemistry of materials for artificial darwinian systems
    • A. G. Cairns-Smith. The chemistry of materials for artificial Darwinian systems. Int. Rev. Phys. Chem., 7:209-250, 1988.
    • (1988) Int. Rev. Phys. Chem. , vol.7 , pp. 209-250
    • Cairns-Smith, A.G.1
  • 12
    • 24144466882 scopus 로고    scopus 로고
    • Error free self-assembly using error prone tiles
    • DNA Computing - 10th International Workshop on DNA Computing, DNA 10
    • H.-L. Chen and A. Goel. Error free self-assembly using error prone tiles. In C. Ferretti, G. Mauri, and C. Zandron, editors, DNA Computing 10, volume LNCS 3384, pages 62-75, Berlin Heidelberg, 2005. Springer-Verlag. (Pubitemid 41231386)
    • (2005) Lecture Notes in Computer Science , vol.3384 , pp. 62-75
    • Chen, H.-L.1    Goel, A.2
  • 13
    • 35048830893 scopus 로고    scopus 로고
    • Self-assembled circuit patterns
    • J. Chen and J. Reif, editors volume LNCS 2943 Berlin Heidelberg Springer-Verlag
    • M. Cook, P. W. K. Rothemund, and E. Winfree. Self-assembled circuit patterns. In J. Chen and J. Reif, editors, DNA Computing 9, volume LNCS 2943, pages 91-107, Berlin Heidelberg, 2004. Springer-Verlag.
    • (2004) DNA Computing , vol.9 , pp. 91-107
    • Cook, M.1    Rothemund, P.W.K.2    Winfree, E.3
  • 16
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • A. D. Ellington and J. W. Szostak. In vitro selection of RNA molecules that bind specific ligands. Nature, 346:817-821, 1990.
    • (1990) Nature , vol.346 , pp. 817-821
    • Ellington, A.D.1    Szostak, J.W.2
  • 17
    • 0027255843 scopus 로고
    • DNA double-crossover molecules
    • T.-J. Fu and N. C. Seeman. DNA double-crossover molecules. Biochemistry, 32:3211-3220, 1993. (Pubitemid 23126886)
    • (1993) Biochemistry , vol.32 , Issue.13 , pp. 3211-3220
    • Fu, T.-J.1    Seeman, N.C.2
  • 18
    • 61849154162 scopus 로고    scopus 로고
    • Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern
    • K. Fujibayashi, R. Hariadi, S. H. Park, E. Winfree, and S. Murata. Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. Nano Letters, 8:3554-3560, 2008.
    • (2008) Nano Letters , vol.8 , pp. 3554-3560
    • Fujibayashi, K.1    Hariadi, R.2    Park, S.H.3    Winfree, E.4    Murata, S.5
  • 19
    • 19344373204 scopus 로고    scopus 로고
    • DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolution
    • D. R. Halpin and P. B. Harbury. DNA display II. genetic manipulation of combinatorial chemistry libraries for small-molecule evolution. PLOS Biol., 2:e174, 2004.
    • (2004) PLOS Biol. , vol.2
    • Halpin, D.R.1    Harbury, P.B.2
  • 20
    • 78149410682 scopus 로고    scopus 로고
    • Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker
    • Y. He and D. R. Liu. Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker. Nat. Nanotechnol., 5:778-782, 2010.
    • (2010) Nat. Nanotechnol. , vol.5 , pp. 778-782
    • He, Y.1    Liu, D.R.2
  • 21
    • 48249098990 scopus 로고    scopus 로고
    • Protein design by directed evolution
    • C. J ackel, P. Kast, and D. Hilvert. Protein design by directed evolution. Annu. Rev. Biophys., 37:153-173, 2008.
    • (2008) Annu. Rev. Biophys. , vol.37 , pp. 153-173
    • Jackel, C.1    Kast, P.2    Hilvert, D.3
  • 22
    • 0024443885 scopus 로고
    • Amplification, mutation and selection of catalytic RNA
    • DOI 10.1016/0378-1119(89)90033-4
    • G. F. Joyce. Amplification, mutation and selection of catalytic RNA. Gene, 82:83-87, 1989. (Pubitemid 19248661)
    • (1989) Gene , vol.82 , Issue.1 , pp. 83-87
    • Joyce, G.F.1
  • 23
    • 0037461639 scopus 로고    scopus 로고
    • The optical properties of metal nanoparticles: The influence of size, shape, and dielectric environment
    • K. L. Kelly, E. Coronado, L. L. Zhao, and G. C. Schatz. The optical properties of metal nanoparticles: The influence of size, shape, and dielectric environment. J. Phys. Chem. B, 107:668-677, 2003.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 668-677
    • Kelly, K.L.1    Coronado, E.2    Zhao, L.L.3    Schatz, G.C.4
  • 25
    • 84951576105 scopus 로고
    • Representational issues in genetic optimization
    • G. E. Liepinsa and M. D. Vose. Representational issues in genetic optimization. J. Exp. Theor. Artif. In., 2:101-115, 1990.
    • (1990) J. Exp. Theor. Artif. In. , vol.2 , pp. 101-115
    • Liepinsa, G.E.1    Vose, M.D.2
  • 27
    • 0031912473 scopus 로고    scopus 로고
    • Atomic structure and electronic properties of single-walled carbon nanotubes
    • DOI 10.1038/34145
    • T. W. Odom, J.-L. Huang, P. Kim, and C. M. Lieber. Atomic structure and electronic properties of single-walled carbon nanotubes. Nature, 391:62-64, 1998. (Pubitemid 28079213)
    • (1998) Nature , vol.391 , Issue.6662 , pp. 62-64
    • Odom, T.W.1    Huang, J.-L.2    Kim, P.3    Lieber, C.M.4
  • 28
    • 24144490824 scopus 로고    scopus 로고
    • Compact error-resilient computational DNA tiling assemblies
    • DNA Computing - 10th International Workshop on DNA Computing, DNA 10
    • J. H. Reif, S. Sahu, and P. Yin. Compact error-resilient computational DNA tiling assemblies. In C. Ferretti, G. Mauri, and C. Zandron, editors, DNA Computing 10, volume LNCS 3384, pages 293-307, Berlin Heidelberg, 2005. Springer-Verlag. (Pubitemid 41231405)
    • (2005) Lecture Notes in Computer Science , vol.3384 , pp. 293-307
    • Reif, J.H.1    Sahu, S.2    Yin, P.3
  • 29
    • 33645028600 scopus 로고    scopus 로고
    • Folding DNA to create nanoscale shapes and patterns
    • P. W. K. Rothemund. Folding DNA to create nanoscale shapes and patterns. Nature, 440:297-302, 2006.
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.K.1
  • 30
    • 14044251445 scopus 로고    scopus 로고
    • Algorithmic self-assembly of DNA sierpinski triangles
    • P. W. K. Rothemund, N. Papadakis, and E. Winfree. Algorithmic self-assembly of DNA Sierpinski triangles. PLOS Biology, 2:424-436, 2004.
    • (2004) PLOS Biology , vol.2 , pp. 424-436
    • Rothemund, P.W.K.1    Papadakis, N.2    Winfree, E.3
  • 34
    • 44249115578 scopus 로고    scopus 로고
    • How crystals that sense and respond to their environments could evolve
    • DOI 10.1007/s11047-007-9046-8, DNA Computing 2006, Selected papers
    • R. Schulman and E. Winfree. How crystals that sense and respond to their environments could evolve. Natur. Comp., 7:219-237, 2008. (Pubitemid 351722422)
    • (2008) Natural Computing , vol.7 , Issue.2 , pp. 219-237
    • Schulman, R.1    Winfree, E.2
  • 35
    • 79251564906 scopus 로고    scopus 로고
    • Simple evolution of complex crystal species
    • Berlin Heidelberg Springer-Verlag
    • R. Schulman and E. Winfree. Simple evolution of complex crystal species. In DNA Computing 16, volume 6518, Berlin Heidelberg, 2010. Springer-Verlag.
    • (2010) DNA Computing 16 , vol.6518
    • Schulman, R.1    Winfree, E.2
  • 36
    • 33845411737 scopus 로고    scopus 로고
    • Enzyme-free nucleic acid logic circuits
    • DOI 10.1126/science.1132493
    • G. Seelig, D. Soloveichik, D. Y. Zhang, and E. Winfree. Enzyme-free nucleic acid logic circuits. Science, 314:1585-1588, 2006. (Pubitemid 44907149)
    • (2006) Science , vol.314 , Issue.5805 , pp. 1585-1588
    • Seelig, G.1    Soloveichik, D.2    Zhang, D.Y.3    Winfree, E.4
  • 37
    • 0020373595 scopus 로고
    • Nucleic-acid junctions and lattices
    • N. C. Seeman. Nucleic-acid junctions and lattices. J. Theor. Biol., 99(2):237-247, 1982.
    • (1982) J. Theor. Biol. , vol.99 , Issue.2 , pp. 237-247
    • Seeman, N.C.1
  • 38
    • 44249087065 scopus 로고    scopus 로고
    • Complexity of compact proofreading for self-assembled patterns
    • Berlin Heidelberg Springer-Verlag
    • D. Soloveichik and E. Winfree. Complexity of compact proofreading for self-assembled patterns. In DNA Computing 11, Berlin Heidelberg, 2005. Springer-Verlag.
    • (2005) DNA Computing , vol.11
    • Soloveichik, D.1    Winfree, E.2
  • 39
    • 84944488797 scopus 로고
    • Proving theorems by pattern recognition. II
    • H. Wang. Proving theorems by pattern recognition. II. Bell Syst. Tech J., 40:1-42, 1961.
    • (1961) Bell Syst. Tech J. , vol.40 , pp. 1-42
    • Wang, H.1
  • 42
    • 0001130354 scopus 로고
    • On the computational power of DNA annealing and ligation
    • E. Winfree. On the computational power of DNA annealing and ligation. In DNA Based Computers, pages 199-221, 1995.
    • (1995) DNA Based Computers , pp. 199-221
    • Winfree, E.1
  • 43
    • 12744255600 scopus 로고    scopus 로고
    • Simulations of computing by self-assembly
    • Caltech
    • E. Winfree. Simulations of computing by self-assembly. Technical Report CS-TR:1998.22, Caltech, 1998.
    • (1998) Technical Report CS-TR:1998.22
    • Winfree, E.1
  • 44
    • 35048869195 scopus 로고    scopus 로고
    • Proofreading tile sets: Error-correction for algorithmic self-assembly
    • J. Chen and J. Reif, editors volume LNCS 2943 Berlin Heidelberg Springer-Verlag
    • E. Winfree and R. Bekbolatov. Proofreading tile sets: Error-correction for algorithmic self-assembly. In J. Chen and J. Reif, editors, DNA Computing 9, volume LNCS 2943, pages 126-144, Berlin Heidelberg, 2004. Springer-Verlag.
    • (2004) DNA Computing , vol.9 , pp. 126-144
    • Winfree, E.1    Bekbolatov, R.2
  • 45
    • 0032490948 scopus 로고    scopus 로고
    • Design and self-assembly of two-dimensional DNA crystals
    • DOI 10.1038/28998
    • E. Winfree, F. Liu, L. A. Wenzler, and N. C. Seeman. Design and self-assembly of two-dimensional DNA crystals. Nature, 394:539-544, 1998. (Pubitemid 28366820)
    • (1998) Nature , vol.394 , Issue.6693 , pp. 539-544
    • Winfree, E.1    Liu, F.2    Wenzler, L.A.3    Seeman, N.C.4
  • 46
    • 0034632783 scopus 로고    scopus 로고
    • A DNA-fuelled molecular machine made of DNA
    • DOI 10.1038/35020524
    • B. Yurke, A. J. Turberfield, A. P. Mills, Jr., F. C. Simmel, and J. L. Nuemann. A DNA-fuelled molecular machine made of DNA. Nature, 406:605-608, 2000. (Pubitemid 30641042)
    • (2000) Nature , vol.406 , Issue.6796 , pp. 605-608
    • Yurke, B.1    Turberfield, A.J.2    Mills Jr., A.P.3    Simmel, F.C.4    Neumann, J.L.5
  • 47
    • 33745131836 scopus 로고    scopus 로고
    • A DNA superstructure-based replicator without product inhibition
    • DOI 10.1007/s11047-005-4465-x
    • D. Y. Zhang and B. Yurke. A DNA superstructure-based replicator without product inhibition. Natur. Comp., 5:183-202, 2006. (Pubitemid 43899159)
    • (2006) Natural Computing , vol.5 , Issue.2 , pp. 183-202
    • Zhang, D.Y.1    Yurke, B.2
  • 48
    • 0034070995 scopus 로고    scopus 로고
    • Calculating nucleic acid secondary structure
    • DOI 10.1016/S0959-440X(00)00088-9
    • M. Zuker. Calculating nucleic acid secondary structure. Curr. Opin. Chem. Biol., 10:303-310, 2000. (Pubitemid 30333099)
    • (2000) Current Opinion in Structural Biology , vol.10 , Issue.3 , pp. 303-310
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.