-
1
-
-
33745160404
-
Large-scale identification of protein-protein interaction of escherichia coli K-12
-
M. Arifuzzaman, M. Maeda, A. Itoh, K. Nishikata, C. Takita, R. Saito, T. Ara, K. Nakahigashi, H.-C. Huang, A. Hirai, K. Tsuzuki, S. Nakamura, M. Altaf-Ul-Amin, T. Oshima, T. Baba, N. Yamamoto, T. Kawamura, T. Ioka-Nakamichi, M. Kitagawa, M. Tomita, S. Kanaya, C. Wada, and H. Mori. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res., 16:686-691, 2006.
-
(2006)
Genome Res.
, vol.16
, pp. 686-691
-
-
Arifuzzaman, M.1
Maeda, M.2
Itoh, A.3
Nishikata, K.4
Takita, C.5
Saito, R.6
Ara, T.7
Nakahigashi, K.8
Huang, H.-C.9
Hirai, A.10
Tsuzuki, K.11
Nakamura, S.12
Altaf-Ul-Amin, M.13
Oshima, T.14
Baba, T.15
Yamamoto, N.16
Kawamura, T.17
Ioka-Nakamichi, T.18
Kitagawa, M.19
Tomita, M.20
Kanaya, S.21
Wada, C.22
Mori, H.23
more..
-
2
-
-
0001270261
-
Design by directed evolution
-
F. H. Arnold. Design by directed evolution. Accounts of Chemical Research, 31:125-131, 1998. (Pubitemid 128473641)
-
(1998)
Accounts of Chemical Research
, vol.31
, Issue.3
, pp. 125-131
-
-
Arnold, F.H.1
-
3
-
-
30644470156
-
Two computational primitives for algorithmic self-assembly: Copying and counting
-
DOI 10.1021/nl052038l
-
R. D. Barish, P. W. K. Rothemund, and E. Winfree. Two computational primitives for algorithmic self-assembly: Copying and counting. Nano Lett., 5:2586-2592, 2005. (Pubitemid 43088917)
-
(2005)
Nano Letters
, vol.5
, Issue.12
, pp. 2586-2592
-
-
Barish, R.D.1
Rothemund, P.W.K.2
Winfree, E.3
-
4
-
-
65549116876
-
An information-bearing seed for nucleating algorithmic self-assembly
-
R. D. Barish, R. Schulman, P. W. K. Rothemund, and E. Winfree. An information-bearing seed for nucleating algorithmic self-assembly. P. Natl. Acad. Sci., 106(15):6054-6059, 2009.
-
(2009)
P. Natl. Acad. Sci.
, vol.106
, Issue.15
, pp. 6054-6059
-
-
Barish, R.D.1
Schulman, R.2
Rothemund, P.W.K.3
Winfree, E.4
-
5
-
-
34249983213
-
DNA nanomachines
-
DOI 10.1038/nnano.2007.104, PII NNANO2007104
-
J. Bath and A. J. Turberfield. DNA nanomachines. Nat. Nanotechnol., 2:275-284, 2007. (Pubitemid 46882966)
-
(2007)
Nature Nanotechnology
, vol.2
, Issue.5
, pp. 275-284
-
-
Bath, J.1
Turberfield, A.J.2
-
6
-
-
0003359740
-
The undecidability of the domino problem
-
R. Berger. The undecidability of the domino problem. Memoirs of the AMS, 66:1-72, 1966.
-
(1966)
Memoirs of the AMS
, vol.66
, pp. 1-72
-
-
Berger, R.1
-
7
-
-
0019873325
-
Kinetic analysis of template-instructed and de novo RNA synthesis by Qβ replicase
-
C. K. Biebricher, M. Eigen, and R. Luce. Kinetic analysis of template-instructed and de novo RNA synthesis by Qβ replicase. J. Mol. Biol., 148:391-410, 1981.
-
(1981)
J. Mol. Biol.
, vol.148
, pp. 391-410
-
-
Biebricher, C.K.1
Eigen, M.2
Luce, R.3
-
8
-
-
0003803285
-
-
University Science Books, Mill Valley, Cal.
-
V. A. Bloomfield, D. M. Crothers, and I. Tinoco. Nucleic acids: structures, properties, and functions. University Science Books, Mill Valley, Cal., 2000.
-
(2000)
Nucleic Acids: Structures, Properties, and Functions
-
-
Bloomfield, V.A.1
Crothers, D.M.2
Tinoco, I.3
-
9
-
-
0013858596
-
The origin of life and the nature of the primitive gene
-
A. G. Cairns-Smith. The origin of life and the nature of the primitive gene. J. Theor. Biol., 10:53-88, 1966.
-
(1966)
J. Theor. Biol.
, vol.10
, pp. 53-88
-
-
Cairns-Smith, A.G.1
-
10
-
-
0004607863
-
The chemistry of materials for artificial darwinian systems
-
A. G. Cairns-Smith. The chemistry of materials for artificial Darwinian systems. Int. Rev. Phys. Chem., 7:209-250, 1988.
-
(1988)
Int. Rev. Phys. Chem.
, vol.7
, pp. 209-250
-
-
Cairns-Smith, A.G.1
-
11
-
-
1842434547
-
Invadable self-assembly: Combining robustness with efficiency
-
H.-L. Chen, Q. Cheng, A. Goel, M.-D. Huang, and P. M. de Espanés. Invadable self-assembly: Combining robustness with efficiency. In Proceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms, pages 883-892, 2005.
-
(2005)
Proceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms
, pp. 883-892
-
-
Chen, H.-L.1
Cheng, Q.2
Goel, A.3
Huang, M.-D.4
De Espanés, P.M.5
-
12
-
-
24144466882
-
Error free self-assembly using error prone tiles
-
DNA Computing - 10th International Workshop on DNA Computing, DNA 10
-
H.-L. Chen and A. Goel. Error free self-assembly using error prone tiles. In C. Ferretti, G. Mauri, and C. Zandron, editors, DNA Computing 10, volume LNCS 3384, pages 62-75, Berlin Heidelberg, 2005. Springer-Verlag. (Pubitemid 41231386)
-
(2005)
Lecture Notes in Computer Science
, vol.3384
, pp. 62-75
-
-
Chen, H.-L.1
Goel, A.2
-
13
-
-
35048830893
-
Self-assembled circuit patterns
-
J. Chen and J. Reif, editors volume LNCS 2943 Berlin Heidelberg Springer-Verlag
-
M. Cook, P. W. K. Rothemund, and E. Winfree. Self-assembled circuit patterns. In J. Chen and J. Reif, editors, DNA Computing 9, volume LNCS 2943, pages 91-107, Berlin Heidelberg, 2004. Springer-Verlag.
-
(2004)
DNA Computing
, vol.9
, pp. 91-107
-
-
Cook, M.1
Rothemund, P.W.K.2
Winfree, E.3
-
16
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
A. D. Ellington and J. W. Szostak. In vitro selection of RNA molecules that bind specific ligands. Nature, 346:817-821, 1990.
-
(1990)
Nature
, vol.346
, pp. 817-821
-
-
Ellington, A.D.1
Szostak, J.W.2
-
17
-
-
0027255843
-
DNA double-crossover molecules
-
T.-J. Fu and N. C. Seeman. DNA double-crossover molecules. Biochemistry, 32:3211-3220, 1993. (Pubitemid 23126886)
-
(1993)
Biochemistry
, vol.32
, Issue.13
, pp. 3211-3220
-
-
Fu, T.-J.1
Seeman, N.C.2
-
18
-
-
61849154162
-
Toward reliable algorithmic self-assembly of DNA tiles: A fixed-width cellular automaton pattern
-
K. Fujibayashi, R. Hariadi, S. H. Park, E. Winfree, and S. Murata. Toward reliable algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. Nano Letters, 8:3554-3560, 2008.
-
(2008)
Nano Letters
, vol.8
, pp. 3554-3560
-
-
Fujibayashi, K.1
Hariadi, R.2
Park, S.H.3
Winfree, E.4
Murata, S.5
-
19
-
-
19344373204
-
DNA display II. Genetic manipulation of combinatorial chemistry libraries for small-molecule evolution
-
D. R. Halpin and P. B. Harbury. DNA display II. genetic manipulation of combinatorial chemistry libraries for small-molecule evolution. PLOS Biol., 2:e174, 2004.
-
(2004)
PLOS Biol.
, vol.2
-
-
Halpin, D.R.1
Harbury, P.B.2
-
20
-
-
78149410682
-
Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker
-
Y. He and D. R. Liu. Autonomous multistep organic synthesis in a single isothermal solution mediated by a DNA walker. Nat. Nanotechnol., 5:778-782, 2010.
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 778-782
-
-
He, Y.1
Liu, D.R.2
-
22
-
-
0024443885
-
Amplification, mutation and selection of catalytic RNA
-
DOI 10.1016/0378-1119(89)90033-4
-
G. F. Joyce. Amplification, mutation and selection of catalytic RNA. Gene, 82:83-87, 1989. (Pubitemid 19248661)
-
(1989)
Gene
, vol.82
, Issue.1
, pp. 83-87
-
-
Joyce, G.F.1
-
23
-
-
0037461639
-
The optical properties of metal nanoparticles: The influence of size, shape, and dielectric environment
-
K. L. Kelly, E. Coronado, L. L. Zhao, and G. C. Schatz. The optical properties of metal nanoparticles: The influence of size, shape, and dielectric environment. J. Phys. Chem. B, 107:668-677, 2003.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 668-677
-
-
Kelly, K.L.1
Coronado, E.2
Zhao, L.L.3
Schatz, G.C.4
-
24
-
-
67449126244
-
Towards self-replicating materials of DNA-functionalized colloids
-
M. E. Leunissen, R. Dreyfus, R. Sha, T. Wang, N. C. Seeman, D. J. Pine, and P. M. Chaikin. Towards self-replicating materials of DNA-functionalized colloids. Soft Matter, 5:2422-2430, 2009.
-
(2009)
Soft Matter
, vol.5
, pp. 2422-2430
-
-
Leunissen, M.E.1
Dreyfus, R.2
Sha, R.3
Wang, T.4
Seeman, N.C.5
Pine, D.J.6
Chaikin, P.M.7
-
25
-
-
84951576105
-
Representational issues in genetic optimization
-
G. E. Liepinsa and M. D. Vose. Representational issues in genetic optimization. J. Exp. Theor. Artif. In., 2:101-115, 1990.
-
(1990)
J. Exp. Theor. Artif. In.
, vol.2
, pp. 101-115
-
-
Liepinsa, G.E.1
Vose, M.D.2
-
27
-
-
0031912473
-
Atomic structure and electronic properties of single-walled carbon nanotubes
-
DOI 10.1038/34145
-
T. W. Odom, J.-L. Huang, P. Kim, and C. M. Lieber. Atomic structure and electronic properties of single-walled carbon nanotubes. Nature, 391:62-64, 1998. (Pubitemid 28079213)
-
(1998)
Nature
, vol.391
, Issue.6662
, pp. 62-64
-
-
Odom, T.W.1
Huang, J.-L.2
Kim, P.3
Lieber, C.M.4
-
28
-
-
24144490824
-
Compact error-resilient computational DNA tiling assemblies
-
DNA Computing - 10th International Workshop on DNA Computing, DNA 10
-
J. H. Reif, S. Sahu, and P. Yin. Compact error-resilient computational DNA tiling assemblies. In C. Ferretti, G. Mauri, and C. Zandron, editors, DNA Computing 10, volume LNCS 3384, pages 293-307, Berlin Heidelberg, 2005. Springer-Verlag. (Pubitemid 41231405)
-
(2005)
Lecture Notes in Computer Science
, vol.3384
, pp. 293-307
-
-
Reif, J.H.1
Sahu, S.2
Yin, P.3
-
29
-
-
33645028600
-
Folding DNA to create nanoscale shapes and patterns
-
P. W. K. Rothemund. Folding DNA to create nanoscale shapes and patterns. Nature, 440:297-302, 2006.
-
(2006)
Nature
, vol.440
, pp. 297-302
-
-
Rothemund, P.W.K.1
-
30
-
-
14044251445
-
Algorithmic self-assembly of DNA sierpinski triangles
-
P. W. K. Rothemund, N. Papadakis, and E. Winfree. Algorithmic self-assembly of DNA Sierpinski triangles. PLOS Biology, 2:424-436, 2004.
-
(2004)
PLOS Biology
, vol.2
, pp. 424-436
-
-
Rothemund, P.W.K.1
Papadakis, N.2
Winfree, E.3
-
34
-
-
44249115578
-
How crystals that sense and respond to their environments could evolve
-
DOI 10.1007/s11047-007-9046-8, DNA Computing 2006, Selected papers
-
R. Schulman and E. Winfree. How crystals that sense and respond to their environments could evolve. Natur. Comp., 7:219-237, 2008. (Pubitemid 351722422)
-
(2008)
Natural Computing
, vol.7
, Issue.2
, pp. 219-237
-
-
Schulman, R.1
Winfree, E.2
-
35
-
-
79251564906
-
Simple evolution of complex crystal species
-
Berlin Heidelberg Springer-Verlag
-
R. Schulman and E. Winfree. Simple evolution of complex crystal species. In DNA Computing 16, volume 6518, Berlin Heidelberg, 2010. Springer-Verlag.
-
(2010)
DNA Computing 16
, vol.6518
-
-
Schulman, R.1
Winfree, E.2
-
36
-
-
33845411737
-
Enzyme-free nucleic acid logic circuits
-
DOI 10.1126/science.1132493
-
G. Seelig, D. Soloveichik, D. Y. Zhang, and E. Winfree. Enzyme-free nucleic acid logic circuits. Science, 314:1585-1588, 2006. (Pubitemid 44907149)
-
(2006)
Science
, vol.314
, Issue.5805
, pp. 1585-1588
-
-
Seelig, G.1
Soloveichik, D.2
Zhang, D.Y.3
Winfree, E.4
-
37
-
-
0020373595
-
Nucleic-acid junctions and lattices
-
N. C. Seeman. Nucleic-acid junctions and lattices. J. Theor. Biol., 99(2):237-247, 1982.
-
(1982)
J. Theor. Biol.
, vol.99
, Issue.2
, pp. 237-247
-
-
Seeman, N.C.1
-
38
-
-
44249087065
-
Complexity of compact proofreading for self-assembled patterns
-
Berlin Heidelberg Springer-Verlag
-
D. Soloveichik and E. Winfree. Complexity of compact proofreading for self-assembled patterns. In DNA Computing 11, Berlin Heidelberg, 2005. Springer-Verlag.
-
(2005)
DNA Computing
, vol.11
-
-
Soloveichik, D.1
Winfree, E.2
-
39
-
-
84944488797
-
Proving theorems by pattern recognition. II
-
H. Wang. Proving theorems by pattern recognition. II. Bell Syst. Tech J., 40:1-42, 1961.
-
(1961)
Bell Syst. Tech J.
, vol.40
, pp. 1-42
-
-
Wang, H.1
-
42
-
-
0001130354
-
On the computational power of DNA annealing and ligation
-
E. Winfree. On the computational power of DNA annealing and ligation. In DNA Based Computers, pages 199-221, 1995.
-
(1995)
DNA Based Computers
, pp. 199-221
-
-
Winfree, E.1
-
43
-
-
12744255600
-
Simulations of computing by self-assembly
-
Caltech
-
E. Winfree. Simulations of computing by self-assembly. Technical Report CS-TR:1998.22, Caltech, 1998.
-
(1998)
Technical Report CS-TR:1998.22
-
-
Winfree, E.1
-
44
-
-
35048869195
-
Proofreading tile sets: Error-correction for algorithmic self-assembly
-
J. Chen and J. Reif, editors volume LNCS 2943 Berlin Heidelberg Springer-Verlag
-
E. Winfree and R. Bekbolatov. Proofreading tile sets: Error-correction for algorithmic self-assembly. In J. Chen and J. Reif, editors, DNA Computing 9, volume LNCS 2943, pages 126-144, Berlin Heidelberg, 2004. Springer-Verlag.
-
(2004)
DNA Computing
, vol.9
, pp. 126-144
-
-
Winfree, E.1
Bekbolatov, R.2
-
45
-
-
0032490948
-
Design and self-assembly of two-dimensional DNA crystals
-
DOI 10.1038/28998
-
E. Winfree, F. Liu, L. A. Wenzler, and N. C. Seeman. Design and self-assembly of two-dimensional DNA crystals. Nature, 394:539-544, 1998. (Pubitemid 28366820)
-
(1998)
Nature
, vol.394
, Issue.6693
, pp. 539-544
-
-
Winfree, E.1
Liu, F.2
Wenzler, L.A.3
Seeman, N.C.4
-
46
-
-
0034632783
-
A DNA-fuelled molecular machine made of DNA
-
DOI 10.1038/35020524
-
B. Yurke, A. J. Turberfield, A. P. Mills, Jr., F. C. Simmel, and J. L. Nuemann. A DNA-fuelled molecular machine made of DNA. Nature, 406:605-608, 2000. (Pubitemid 30641042)
-
(2000)
Nature
, vol.406
, Issue.6796
, pp. 605-608
-
-
Yurke, B.1
Turberfield, A.J.2
Mills Jr., A.P.3
Simmel, F.C.4
Neumann, J.L.5
-
47
-
-
33745131836
-
A DNA superstructure-based replicator without product inhibition
-
DOI 10.1007/s11047-005-4465-x
-
D. Y. Zhang and B. Yurke. A DNA superstructure-based replicator without product inhibition. Natur. Comp., 5:183-202, 2006. (Pubitemid 43899159)
-
(2006)
Natural Computing
, vol.5
, Issue.2
, pp. 183-202
-
-
Zhang, D.Y.1
Yurke, B.2
-
48
-
-
0034070995
-
Calculating nucleic acid secondary structure
-
DOI 10.1016/S0959-440X(00)00088-9
-
M. Zuker. Calculating nucleic acid secondary structure. Curr. Opin. Chem. Biol., 10:303-310, 2000. (Pubitemid 30333099)
-
(2000)
Current Opinion in Structural Biology
, vol.10
, Issue.3
, pp. 303-310
-
-
Zuker, M.1
|