-
1
-
-
58149194624
-
SMART 6: recent updates and new developments.
-
10.1093/nar/gkn808, 2686533, 18978020
-
Letunic I, Doerks T, Bork P. SMART 6: recent updates and new developments. Nucleic Acids Res 2009, 37:D229-D232. 10.1093/nar/gkn808, 2686533, 18978020.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
2
-
-
67649671966
-
SR proteins in vertical integration of gene expression from transcription to RNA processing to translation.
-
10.1016/j.molcel.2009.06.016, 2744344, 19595711
-
Zhong X-Y, Wang P, Han J, Rosenfeld MG, Fu X-D. SR proteins in vertical integration of gene expression from transcription to RNA processing to translation. Mol Cell 2009, 35:1-10. 10.1016/j.molcel.2009.06.016, 2744344, 19595711.
-
(2009)
Mol Cell
, vol.35
, pp. 1-10
-
-
Zhong, X.-Y.1
Wang, P.2
Han, J.3
Rosenfeld, M.G.4
Fu, X.-D.5
-
3
-
-
75349085408
-
The SR protein family.
-
10.1186/gb-2009-10-10-242, 2784316, 19857271
-
Shepard P, Hertel K. The SR protein family. Genome Biol 2009, 10:242. 10.1186/gb-2009-10-10-242, 2784316, 19857271.
-
(2009)
Genome Biol
, vol.10
, pp. 242
-
-
Shepard, P.1
Hertel, K.2
-
4
-
-
42449159377
-
SR proteins and related factors in alternative splicing.
-
10.1007/978-0-387-77374-2_7, 18380343
-
Lin S, Fu XD. SR proteins and related factors in alternative splicing. Adv Exp Med Biol 2007, 623:107-122. 10.1007/978-0-387-77374-2_7, 18380343.
-
(2007)
Adv Exp Med Biol
, vol.623
, pp. 107-122
-
-
Lin, S.1
Fu, X.D.2
-
5
-
-
64749099643
-
SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo.
-
10.1016/j.molcel.2009.02.031, 19394295
-
Sapra AK, Änkö M-L, Grishina I, Lorenz M, Pabis M, Poser I, Rollins J, Weiland E-M, Neugebauer KM. SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo. Mol Cell 2009, 34:179-190. 10.1016/j.molcel.2009.02.031, 19394295.
-
(2009)
Mol Cell
, vol.34
, pp. 179-190
-
-
Sapra, A.K.1
Änkö, M.-L.2
Grishina, I.3
Lorenz, M.4
Pabis, M.5
Poser, I.6
Rollins, J.7
Weiland, E.-M.8
Neugebauer, K.M.9
-
6
-
-
0031929940
-
A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm.
-
10.1101/gad.12.1.55, 316398, 9420331
-
Caceres JF, Screaton GR, Krainer AR. A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm. Genes Dev 1998, 12:55-66. 10.1101/gad.12.1.55, 316398, 9420331.
-
(1998)
Genes Dev
, vol.12
, pp. 55-66
-
-
Caceres, J.F.1
Screaton, G.R.2
Krainer, A.R.3
-
7
-
-
1242316952
-
Arginine-serine-rich domains bound at splicing enhancers contact the branchpoint to promote prespliceosome assembly.
-
10.1016/S1097-2765(04)00025-5, 14967144
-
Shen H, Kan JLC, Green MR. Arginine-serine-rich domains bound at splicing enhancers contact the branchpoint to promote prespliceosome assembly. Mol Cell 2004, 13:367-376. 10.1016/S1097-2765(04)00025-5, 14967144.
-
(2004)
Mol Cell
, vol.13
, pp. 367-376
-
-
Shen, H.1
Kan, J.L.C.2
Green, M.R.3
-
8
-
-
0033013977
-
Substrate specificities of SR proteins in constitutive splicing are determined by their RNA recognition motifs and composite pre-mRNA exonic elements.
-
83978, 10022872
-
Mayeda A, Screaton GR, Chandler SD, Fu X-D, Krainer AR. Substrate specificities of SR proteins in constitutive splicing are determined by their RNA recognition motifs and composite pre-mRNA exonic elements. Mol Cell Biol 1999, 19:1853-1863. 83978, 10022872.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1853-1863
-
-
Mayeda, A.1
Screaton, G.R.2
Chandler, S.D.3
Fu, X.-D.4
Krainer, A.R.5
-
9
-
-
0038401969
-
Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity.
-
10.1083/jcb.138.2.225, 2138183, 9230067
-
Caceres JF, Misteli T, Screaton GR, Spector DL, Krainer AR. Role of the modular domains of SR proteins in subnuclear localization and alternative splicing specificity. J Cell Biol 1997, 138:225-238. 10.1083/jcb.138.2.225, 2138183, 9230067.
-
(1997)
J Cell Biol
, vol.138
, pp. 225-238
-
-
Caceres, J.F.1
Misteli, T.2
Screaton, G.R.3
Spector, D.L.4
Krainer, A.R.5
-
10
-
-
67650484984
-
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.
-
10.1038/nbt.1550, 19561594
-
Ray D, Kazan H, Chan ET, Castillo LP, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol 2009, 27:667-670. 10.1038/nbt.1550, 19561594.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 667-670
-
-
Ray, D.1
Kazan, H.2
Chan, E.T.3
Castillo, L.P.4
Chaudhry, S.5
Talukder, S.6
Blencowe, B.J.7
Morris, Q.8
Hughes, T.R.9
-
11
-
-
33745899048
-
Alternative splicing: new insights from global analyses.
-
10.1016/j.cell.2006.06.023, 16839875
-
Blencowe BJ. Alternative splicing: new insights from global analyses. Cell 2006, 126:37-47. 10.1016/j.cell.2006.06.023, 16839875.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
12
-
-
61849139645
-
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.
-
2661799, 19116412
-
Sanford JR, Wang X, Mort M, VanDuyn N, Cooper DN, Mooney SD, Edenberg HJ, Liu Y. Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. Genome Res 2009, 19:381-394. 2661799, 19116412.
-
(2009)
Genome Res
, vol.19
, pp. 381-394
-
-
Sanford, J.R.1
Wang, X.2
Mort, M.3
VanDuyn, N.4
Cooper, D.N.5
Mooney, S.D.6
Edenberg, H.J.7
Liu, Y.8
-
13
-
-
77955416143
-
Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells.
-
10.1038/nsmb.1862, 20639886
-
Änkö M-L, Morales L, Henry I, Beyer A, Neugebauer KM. Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells. Nat Struct Mol Biol 2010, 17:962-970. 10.1038/nsmb.1862, 20639886.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 962-970
-
-
Änkö, M.-L.1
Morales, L.2
Henry, I.3
Beyer, A.4
Neugebauer, K.M.5
-
14
-
-
67649840910
-
CLIP: Construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo.
-
10.1016/j.ymeth.2009.02.021, 19272451
-
Wang Z, Tollervey J, Briese M, Turner D, Ule J. CLIP: Construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo. Methods 2009, 48:287-293. 10.1016/j.ymeth.2009.02.021, 19272451.
-
(2009)
Methods
, vol.48
, pp. 287-293
-
-
Wang, Z.1
Tollervey, J.2
Briese, M.3
Turner, D.4
Ule, J.5
-
15
-
-
77954387023
-
ICLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution.
-
10.1038/nsmb.1838, 3000544, 20601959
-
Konig J, Zarnack K, Rot G, Curk T, Kayikci M, Zupan B, Turner DJ, Luscombe NM, Ule J. iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat Struct Mol Biol 2010, 17:909-915. 10.1038/nsmb.1838, 3000544, 20601959.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 909-915
-
-
Konig, J.1
Zarnack, K.2
Rot, G.3
Curk, T.4
Kayikci, M.5
Zupan, B.6
Turner, D.J.7
Luscombe, N.M.8
Ule, J.9
-
16
-
-
59649107040
-
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells.
-
10.1038/nsmb.1545, 2735254, 19136955
-
Yeo GW, Coufal NG, Liang TY, Peng GE, Fu X-D, Gage FH. An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat Struct Mol Biol 2009, 16:130-137. 10.1038/nsmb.1545, 2735254, 19136955.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 130-137
-
-
Yeo, G.W.1
Coufal, N.G.2
Liang, T.Y.3
Peng, G.E.4
Fu, X.-D.5
Gage, F.H.6
-
17
-
-
78149393552
-
ICLIP predicts the dual splicing effects of TIA-RNA interactions.
-
10.1371/journal.pbio.1000530, 2964331, 21048981
-
Wang Z, Kayikci M, Briese M, Zarnack K, Luscombe NM, Rot G, Zupan B, Curk T, Ule J. iCLIP predicts the dual splicing effects of TIA-RNA interactions. PLoS Biol 2010, 8:e1000530. 10.1371/journal.pbio.1000530, 2964331, 21048981.
-
(2010)
PLoS Biol
, vol.8
-
-
Wang, Z.1
Kayikci, M.2
Briese, M.3
Zarnack, K.4
Luscombe, N.M.5
Rot, G.6
Zupan, B.7
Curk, T.8
Ule, J.9
-
18
-
-
0033017499
-
The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers.
-
10.1017/S1355838299981967, 1369774, 10094314
-
Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA 1999, 5:468-483. 10.1017/S1355838299981967, 1369774, 10094314.
-
(1999)
RNA
, vol.5
, pp. 468-483
-
-
Cavaloc, Y.1
Bourgeois, C.F.2
Kister, L.3
Stevenin, J.4
-
19
-
-
0033019048
-
Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences.
-
83964, 10022858
-
Schaal TD, Maniatis T. Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol 1999, 19:1705-1719. 83964, 10022858.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1705-1719
-
-
Schaal, T.D.1
Maniatis, T.2
-
20
-
-
0030774235
-
Structural, functional, and protein binding analyses of bovine papillomavirus type 1 exonic splicing enhancers.
-
230210, 9371566
-
Zheng ZM, He PJ, Baker CC. Structural, functional, and protein binding analyses of bovine papillomavirus type 1 exonic splicing enhancers. J Virol 1997, 71:9096-9107. 230210, 9371566.
-
(1997)
J Virol
, vol.71
, pp. 9096-9107
-
-
Zheng, Z.M.1
He, P.J.2
Baker, C.C.3
-
21
-
-
79953180492
-
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.
-
10.1038/nn.2778, 3108889, 21358640
-
Tollervey JR, Curk T, Rogelj B, Briese M, Cereda M, Kayikci M, König J, Hortobágyi T, Nishimura AL, Zupunski V, Patani R, Chandran S, Rot G, Zupan B, Shaw CE, Ule J. Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. Nat Neurosci 2011, 14:452-458. 10.1038/nn.2778, 3108889, 21358640.
-
(2011)
Nat Neurosci
, vol.14
, pp. 452-458
-
-
Tollervey, J.R.1
Curk, T.2
Rogelj, B.3
Briese, M.4
Cereda, M.5
Kayikci, M.6
König, J.7
Hortobágyi, T.8
Nishimura, A.L.9
Zupunski, V.10
Patani, R.11
Chandran, S.12
Rot, G.13
Zupan, B.14
Shaw, C.E.15
Ule, J.16
-
22
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
-
Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, Watt AT, Freier SM, Bennett CF, Sharma A, Bubulya PA, Blencowe BJ, Prasanth SG, Prasanth KV. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 2010, 29:925-938.
-
(2010)
Mol Cell
, vol.29
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
Freier, S.M.7
Bennett, C.F.8
Sharma, A.9
Bubulya, P.A.10
Blencowe, B.J.11
Prasanth, S.G.12
Prasanth, K.V.13
-
23
-
-
78650084265
-
Nuclear organization and dynamics of 7SK RNA in regulating gene expression.
-
10.1091/mbc.E10-02-0105, 2993747, 20881057
-
Prasanth KV, Camiolo M, Chan G, Tripathi V, Denis L, Nakamura T, Hubner MR, Spector DL. Nuclear organization and dynamics of 7SK RNA in regulating gene expression. Mol Biol Cell 2010, 21:4184-4196. 10.1091/mbc.E10-02-0105, 2993747, 20881057.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 4184-4196
-
-
Prasanth, K.V.1
Camiolo, M.2
Chan, G.3
Tripathi, V.4
Denis, L.5
Nakamura, T.6
Hubner, M.R.7
Spector, D.L.8
-
24
-
-
0035898634
-
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs.
-
10.1093/emboj/20.14.3617, 125535, 11447102
-
Kiss T. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J 2001, 20:3617-3622. 10.1093/emboj/20.14.3617, 125535, 11447102.
-
(2001)
EMBO J
, vol.20
, pp. 3617-3622
-
-
Kiss, T.1
-
25
-
-
0036429193
-
The human and mouse replication-dependent histone genes.
-
10.1006/geno.2002.6850, 12408966
-
Marzluff WF, Gongidi P, Woods KR, Jin J, Maltais LJ. The human and mouse replication-dependent histone genes. Genomics 2002, 80:487-498. 10.1006/geno.2002.6850, 12408966.
-
(2002)
Genomics
, vol.80
, pp. 487-498
-
-
Marzluff, W.F.1
Gongidi, P.2
Woods, K.R.3
Jin, J.4
Maltais, L.J.5
-
26
-
-
54149091257
-
Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail.
-
10.1038/nrg2438, 2715827, 18927579
-
Marzluff WF, Wagner EJ, Duronio RJ. Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat Rev Genet 2008, 9:843-854. 10.1038/nrg2438, 2715827, 18927579.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 843-854
-
-
Marzluff, W.F.1
Wagner, E.J.2
Duronio, R.J.3
-
27
-
-
0035025061
-
Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA.
-
10.1016/S1097-2765(01)00233-7, 11336712
-
Huang Y, Steitz JA. Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol Cell 2001, 7:899-905. 10.1016/S1097-2765(01)00233-7, 11336712.
-
(2001)
Mol Cell
, vol.7
, pp. 899-905
-
-
Huang, Y.1
Steitz, J.A.2
-
28
-
-
0344211508
-
SR splicing factors serve as adapter proteins for TAP-dependent mRNA export.
-
10.1016/S1097-2765(03)00089-3, 12667464
-
Huang Y, Gattoni R, Stévenin J, Steitz JA. SR splicing factors serve as adapter proteins for TAP-dependent mRNA export. Mol Cell 2003, 11:837-843. 10.1016/S1097-2765(03)00089-3, 12667464.
-
(2003)
Mol Cell
, vol.11
, pp. 837-843
-
-
Huang, Y.1
Gattoni, R.2
Stévenin, J.3
Steitz, J.A.4
-
29
-
-
11144335418
-
Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP.
-
10.1261/rna.7189205, 1370690, 15611298
-
Erkmann JA, Sanchez R, Treichel N, Marzluff WF, Kutay U. Nuclear export of metazoan replication-dependent histone mRNAs is dependent on RNA length and is mediated by TAP. RNA 2005, 11:45-58. 10.1261/rna.7189205, 1370690, 15611298.
-
(2005)
RNA
, vol.11
, pp. 45-58
-
-
Erkmann, J.A.1
Sanchez, R.2
Treichel, N.3
Marzluff, W.F.4
Kutay, U.5
-
30
-
-
80055120941
-
Juxtaposition of two distant, serine-arginine-rich protein-binding elements is required for optimal polyadenylation in rous sarcoma virus.
-
10.1128/JVI.00721-11, 21849435
-
Hudson SW, McNally MT. Juxtaposition of two distant, serine-arginine-rich protein-binding elements is required for optimal polyadenylation in rous sarcoma virus. J Virol 2011, 85:11351-11360. 10.1128/JVI.00721-11, 21849435.
-
(2011)
J Virol
, vol.85
, pp. 11351-11360
-
-
Hudson, S.W.1
McNally, M.T.2
-
31
-
-
0031840978
-
Regulation of alternative polyadenylation by U1 snRNPs and SRp20.
-
109082, 9710581
-
Lou H, Neugebauer KM, Gagel RF, Berget SM. Regulation of alternative polyadenylation by U1 snRNPs and SRp20. Mol Cell Biol 1998, 18:4977-4985. 109082, 9710581.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 4977-4985
-
-
Lou, H.1
Neugebauer, K.M.2
Gagel, R.F.3
Berget, S.M.4
-
32
-
-
60849102145
-
Knockdown of SLBP results in nuclear retention of histone mRNA.
-
10.1261/rna.1205409, 2657014, 19155325
-
Sullivan KD, Mullen TE, Marzluff WF, Wagner EJ. Knockdown of SLBP results in nuclear retention of histone mRNA. RNA 2009, 15:459-472. 10.1261/rna.1205409, 2657014, 19155325.
-
(2009)
RNA
, vol.15
, pp. 459-472
-
-
Sullivan, K.D.1
Mullen, T.E.2
Marzluff, W.F.3
Wagner, E.J.4
-
33
-
-
33344477914
-
U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis.
-
10.1261/rna.2270406, 1383579, 16495235
-
Godfrey AC, Kupsco JM, Burch BD, Zimmerman RM, Dominski Z, Marzluff WF, Duronio RJ. U7 snRNA mutations in Drosophila block histone pre-mRNA processing and disrupt oogenesis. RNA 2006, 12:396-409. 10.1261/rna.2270406, 1383579, 16495235.
-
(2006)
RNA
, vol.12
, pp. 396-409
-
-
Godfrey, A.C.1
Kupsco, J.M.2
Burch, B.D.3
Zimmerman, R.M.4
Dominski, Z.5
Marzluff, W.F.6
Duronio, R.J.7
-
34
-
-
36248931620
-
A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing.
-
10.1016/j.molcel.2007.10.009, 18042462
-
Wagner EJ, Burch BD, Godfrey AC, Salzler HR, Duronio RJ, Marzluff WF. A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing. Mol Cell 2007, 28:692-699. 10.1016/j.molcel.2007.10.009, 18042462.
-
(2007)
Mol Cell
, vol.28
, pp. 692-699
-
-
Wagner, E.J.1
Burch, B.D.2
Godfrey, A.C.3
Salzler, H.R.4
Duronio, R.J.5
Marzluff, W.F.6
-
35
-
-
79953014914
-
Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq.
-
10.1261/rna.2581711, 3062186, 21343387
-
Shepard PJ, Choi E-A, Lu J, Flanagan LA, Hertel KJ, Shi Y. Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq. RNA 2011, 17:761-772. 10.1261/rna.2581711, 3062186, 21343387.
-
(2011)
RNA
, vol.17
, pp. 761-772
-
-
Shepard, P.J.1
Choi, E.-A.2
Lu, J.3
Flanagan, L.A.4
Hertel, K.J.5
Shi, Y.6
-
36
-
-
79951551684
-
Genomewide characterization of non-polyadenylated RNAs.
-
10.1186/gb-2011-12-2-r16, 3188798, 21324177
-
Yang L, Duff M, Graveley B, Carmichael G, Chen L-L. Genomewide characterization of non-polyadenylated RNAs. Genome Biol 2011, 12:R16. 10.1186/gb-2011-12-2-r16, 3188798, 21324177.
-
(2011)
Genome Biol
, vol.12
-
-
Yang, L.1
Duff, M.2
Graveley, B.3
Carmichael, G.4
Chen, L.-L.5
-
37
-
-
0033552901
-
SR proteins are 'locators' of the RNA splicing machinery.
-
Graveley BR, Hertel KJ, Maniatis T. SR proteins are 'locators' of the RNA splicing machinery. Curr Biol 1999, 9:R6-R7.
-
(1999)
Curr Biol
, vol.9
-
-
Graveley, B.R.1
Hertel, K.J.2
Maniatis, T.3
-
38
-
-
33745048938
-
A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones.
-
10.1186/gb-2006-7-1-r1, 1431707, 16507133
-
Gooding C, Clark F, Wollerton M, Grellscheid S-N, Groom H, Smith C. A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones. Genome Biol 2006, 7:R1. 10.1186/gb-2006-7-1-r1, 1431707, 16507133.
-
(2006)
Genome Biol
, vol.7
-
-
Gooding, C.1
Clark, F.2
Wollerton, M.3
Grellscheid, S.-N.4
Groom, H.5
Smith, C.6
-
39
-
-
78649684957
-
Genome-wide association between branch point properties and alternative splicing.
-
10.1371/journal.pcbi.1001016, 2991248, 21124863
-
Corvelo A, Hallegger M, Smith CWJ, Eyras E. Genome-wide association between branch point properties and alternative splicing. PLoS Comput Biol 2010, 6:e1001016. 10.1371/journal.pcbi.1001016, 2991248, 21124863.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Corvelo, A.1
Hallegger, M.2
Smith, C.W.J.3
Eyras, E.4
-
40
-
-
33745609509
-
RS domains contact splicing signals and promote splicing by a commonmechanism in yeast through humans.
-
10.1101/gad.1422106, 1522072, 16766678
-
Shen H, Green MR. RS domains contact splicing signals and promote splicing by a commonmechanism in yeast through humans. Genes Dev 2006, 20:1755-1765. 10.1101/gad.1422106, 1522072, 16766678.
-
(2006)
Genes Dev
, vol.20
, pp. 1755-1765
-
-
Shen, H.1
Green, M.R.2
-
41
-
-
0030850812
-
The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation.
-
10.1093/emboj/16.16.5077, 1170142, 9305649
-
Jumaa H, Nielsen PJ. The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation. EMBO J 1997, 16:5077-5085. 10.1093/emboj/16.16.5077, 1170142, 9305649.
-
(1997)
EMBO J
, vol.16
, pp. 5077-5085
-
-
Jumaa, H.1
Nielsen, P.J.2
-
42
-
-
33947305594
-
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay.
-
10.1101/gad.1525507, 1820944, 17369403
-
Ni JZ, Grate L, Donohue JP, Preston C, Nobida N, O'Brien G, Shiue L, Clark TA, Blume JE, Ares M. Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay. Genes Dev 2007, 21:708-718. 10.1101/gad.1525507, 1820944, 17369403.
-
(2007)
Genes Dev
, vol.21
, pp. 708-718
-
-
Ni, J.Z.1
Grate, L.2
Donohue, J.P.3
Preston, C.4
Nobida, N.5
O'Brien, G.6
Shiue, L.7
Clark, T.A.8
Blume, J.E.9
Ares, M.10
-
43
-
-
34247330971
-
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements.
-
10.1038/nature05676, 17361132
-
Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature 2007, 446:926-929. 10.1038/nature05676, 17361132.
-
(2007)
Nature
, vol.446
, pp. 926-929
-
-
Lareau, L.F.1
Inada, M.2
Green, R.E.3
Wengrod, J.C.4
Brenner, S.E.5
-
44
-
-
79951715071
-
Regulation of alternative splicing by the core spliceosomal machinery.
-
10.1101/gad.2004811, 3042160, 21325135
-
Saltzman AL, Pan Q, Blencowe BJ. Regulation of alternative splicing by the core spliceosomal machinery. Genes Dev 2011, 25:373-384. 10.1101/gad.2004811, 3042160, 21325135.
-
(2011)
Genes Dev
, vol.25
, pp. 373-384
-
-
Saltzman, A.L.1
Pan, Q.2
Blencowe, B.J.3
-
45
-
-
24944433166
-
Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes.
-
10.1093/nar/gki810, 1201331, 16147989
-
Wang J, Smith PJ, Krainer AR, Zhang MQ. Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acids Res 2005, 33:5053-5062. 10.1093/nar/gki810, 1201331, 16147989.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5053-5062
-
-
Wang, J.1
Smith, P.J.2
Krainer, A.R.3
Zhang, M.Q.4
-
46
-
-
69949132008
-
Paraspeckles: nuclear bodies built on long noncoding RNA.
-
10.1083/jcb.200906113, 2742191, 19720872
-
Bond CS, Fox AH. Paraspeckles: nuclear bodies built on long noncoding RNA. J Cell Biol 2009, 186:637-644. 10.1083/jcb.200906113, 2742191, 19720872.
-
(2009)
J Cell Biol
, vol.186
, pp. 637-644
-
-
Bond, C.S.1
Fox, A.H.2
-
47
-
-
0035818553
-
Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells.
-
10.1073/pnas.231490998, 60799, 11606788
-
Hirose T, Steitz JA. Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells. Proc Natl Acad Sci USA 2001, 98:12914-12919. 10.1073/pnas.231490998, 60799, 11606788.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 12914-12919
-
-
Hirose, T.1
Steitz, J.A.2
-
48
-
-
77957315563
-
Regulation of alternative splicing by short non-coding nuclear RNAs.
-
Khanna A, Stamm S. Regulation of alternative splicing by short non-coding nuclear RNAs. RNA Biol 2011, 7:480-485.
-
(2011)
RNA Biol
, vol.7
, pp. 480-485
-
-
Khanna, A.1
Stamm, S.2
-
49
-
-
0034161419
-
Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases.
-
10.1016/S0968-0004(00)01549-8, 10694877
-
Blencowe BJ. Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases. Trends Biochem Sci 2000, 25:106-110. 10.1016/S0968-0004(00)01549-8, 10694877.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 106-110
-
-
Blencowe, B.J.1
-
50
-
-
0031840978
-
Regulation of alternative polyadenylation by U1 snRNPs and SRp20.
-
109082, 9710581
-
Lou H, Neugebauer KM, Gagel RF, Berget SM. Regulation of alternative polyadenylation by U1 snRNPs and SRp20. Mol Cell Biol 1998, 18:4977-4985. 109082, 9710581.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 4977-4985
-
-
Lou, H.1
Neugebauer, K.M.2
Gagel, R.F.3
Berget, S.M.4
-
51
-
-
0032980192
-
Serine-arginine (SR)-rich splicing factors have an exon-independent function in pre-mRNA splicing.
-
10.1073/pnas.96.6.2651, 15823, 10077565
-
Hertel KJ, Maniatis T. Serine-arginine (SR)-rich splicing factors have an exon-independent function in pre-mRNA splicing. Proc Natl Acad Sci USA 1999, 96:2651-2655. 10.1073/pnas.96.6.2651, 15823, 10077565.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 2651-2655
-
-
Hertel, K.J.1
Maniatis, T.2
-
52
-
-
77949270281
-
SF2/ASF autoregulation involves multiple layers of post-transcriptional and translational control.
-
10.1038/nsmb.1750, 2921916, 20139984
-
Sun S, Zhang Z, Sinha R, Karni R, Krainer AR. SF2/ASF autoregulation involves multiple layers of post-transcriptional and translational control. Nat Struct Mol Biol 2010, 17:306-312. 10.1038/nsmb.1750, 2921916, 20139984.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 306-312
-
-
Sun, S.1
Zhang, Z.2
Sinha, R.3
Karni, R.4
Krainer, A.R.5
-
53
-
-
2142738304
-
WebLogo: a sequence logo generator.
-
10.1101/gr.849004, 419797, 15173120
-
Crooks GE, Hon G, Chandonia J-M, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004, 14:1188-1190. 10.1101/gr.849004, 419797, 15173120.
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
54
-
-
84899802115
-
Array Express.
-
Array Express. , http://www.ebi.ac.uk/arrayexpress/
-
-
-
|