-
1
-
-
51949107835
-
Progress in metabolic engineering of Saccharomyces cerevisiae
-
Nevoigt E. Progress in metabolic engineering of Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 2008, 72:379-412.
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 379-412
-
-
Nevoigt, E.1
-
2
-
-
59049091116
-
Yeast cell factories for fine chemical and api production
-
Pscheidt B., Glieder A. Yeast cell factories for fine chemical and api production. Microb. Cell Fact. 2008, 7:25.
-
(2008)
Microb. Cell Fact.
, vol.7
, pp. 25
-
-
Pscheidt, B.1
Glieder, A.2
-
3
-
-
0038699591
-
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting
-
Allen J., Davey H.M., Broadhurst D., Heald J.K., Rowland J.J., Oliver S.G., Kell D.B. High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. Nat. Biotechnol. 2003, 21:692-696.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 692-696
-
-
Allen, J.1
Davey, H.M.2
Broadhurst, D.3
Heald, J.K.4
Rowland, J.J.5
Oliver, S.G.6
Kell, D.B.7
-
4
-
-
85047689281
-
Metabolomics-based systematic prediction of yeast lifespan and its application for semi-rational screening of ageing-related mutants
-
Yoshida R., Tamura T., Takaoka C., Harada K., Kobayashi A., Mukai Y., Fukusaki E. Metabolomics-based systematic prediction of yeast lifespan and its application for semi-rational screening of ageing-related mutants. Aging Cell 2010, 9:616-625.
-
(2010)
Aging Cell
, vol.9
, pp. 616-625
-
-
Yoshida, R.1
Tamura, T.2
Takaoka, C.3
Harada, K.4
Kobayashi, A.5
Mukai, Y.6
Fukusaki, E.7
-
5
-
-
43049121687
-
Development of bottom-fermenting Saccharomyces strains that produce high SO2 levels, using integrated metabolome and transcriptome analysis
-
Yoshida S., Imoto J., Minato T., Oouchi R., Sugihara M., Imai T., Ishiguro T., Mizutani S., Tomita M., Soga T., Yoshimoto H. Development of bottom-fermenting Saccharomyces strains that produce high SO2 levels, using integrated metabolome and transcriptome analysis. Appl. Environ. Microbiol. 2008, 74:2787-2796.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 2787-2796
-
-
Yoshida, S.1
Imoto, J.2
Minato, T.3
Oouchi, R.4
Sugihara, M.5
Imai, T.6
Ishiguro, T.7
Mizutani, S.8
Tomita, M.9
Soga, T.10
Yoshimoto, H.11
-
6
-
-
78650995732
-
Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae
-
Hasunuma T., Sanda T., Yamada R., Yoshimura K., Ishii J., Kondo A. Metabolic pathway engineering based on metabolomics confers acetic and formic acid tolerance to a recombinant xylose-fermenting strain of Saccharomyces cerevisiae. Microb. Cell Fact. 2011, 10:2.
-
(2011)
Microb. Cell Fact.
, vol.10
, pp. 2
-
-
Hasunuma, T.1
Sanda, T.2
Yamada, R.3
Yoshimura, K.4
Ishii, J.5
Kondo, A.6
-
7
-
-
80052600481
-
Engineering strategy of yeast metabolism for higher alcohol production
-
Matsuda F., Furusawa C., Kondo T., Ishii J., Shimizu H., Kondo A. Engineering strategy of yeast metabolism for higher alcohol production. Microb. Cell Fact. 2011, 10:70.
-
(2011)
Microb. Cell Fact.
, vol.10
, pp. 70
-
-
Matsuda, F.1
Furusawa, C.2
Kondo, T.3
Ishii, J.4
Shimizu, H.5
Kondo, A.6
-
8
-
-
38049001166
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
-
Atsumi S., Hanai T., Liao J.C. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature 2008, 451:86-89.
-
(2008)
Nature
, vol.451
, pp. 86-89
-
-
Atsumi, S.1
Hanai, T.2
Liao, J.C.3
-
9
-
-
58249098522
-
Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol
-
Steen E.J., Chan R., Prasad N., Myers S., Petzold C.J., Redding A., Ouellet M., Keasling J.D. Metabolic engineering of Saccharomyces cerevisiae for the production of n-butanol. Microb. Cell Fact. 2008, 7:36.
-
(2008)
Microb. Cell Fact.
, vol.7
, pp. 36
-
-
Steen, E.J.1
Chan, R.2
Prasad, N.3
Myers, S.4
Petzold, C.J.5
Redding, A.6
Ouellet, M.7
Keasling, J.D.8
-
10
-
-
16444380495
-
Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae
-
Wittmann C., Hans M., Van Winden W.A., Ras C., Heijnen J.J. Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae. Biotechnol. Bioeng. 2005, 89:839-847.
-
(2005)
Biotechnol. Bioeng.
, vol.89
, pp. 839-847
-
-
Wittmann, C.1
Hans, M.2
Van Winden, W.A.3
Ras, C.4
Heijnen, J.J.5
-
11
-
-
58449134032
-
Widely targeted metabolomics based on large-scale ms/ms data for elucidating metabolite accumulation patterns in plants
-
Sawada Y., Akiyama K., Sakata A., Kuwahara A., Otsuki H., Sakurai T., Saito K., Hirai M.Y. Widely targeted metabolomics based on large-scale ms/ms data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol. 2009, 50:37-47.
-
(2009)
Plant Cell Physiol.
, vol.50
, pp. 37-47
-
-
Sawada, Y.1
Akiyama, K.2
Sakata, A.3
Kuwahara, A.4
Otsuki, H.5
Sakurai, T.6
Saito, K.7
Hirai, M.Y.8
-
12
-
-
33947503169
-
Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry
-
Luo B., Groenke K., Takors R., Wandrey C., Oldiges M. Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry. J. Chromatogr. A 2007, 1147:153-164.
-
(2007)
J. Chromatogr. A
, vol.1147
, pp. 153-164
-
-
Luo, B.1
Groenke, K.2
Takors, R.3
Wandrey, C.4
Oldiges, M.5
-
13
-
-
77952985821
-
Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites
-
Buescher J.M., Moco S., Sauer U., Zamboni N. Ultrahigh performance liquid chromatography-tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites. Anal. Chem. 2010, 82:4403-4412.
-
(2010)
Anal. Chem.
, vol.82
, pp. 4403-4412
-
-
Buescher, J.M.1
Moco, S.2
Sauer, U.3
Zamboni, N.4
-
14
-
-
0024669291
-
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
-
Sikorski R.S., Hieter P. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 1989, 122:19-27.
-
(1989)
Genetics
, vol.122
, pp. 19-27
-
-
Sikorski, R.S.1
Hieter, P.2
-
15
-
-
0032579440
-
Designer deletion strains derived from Saccharomyces cerevisiae s288c: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications
-
Brachmann C.B., Davies A., Cost G.J., Caputo E., Li J., Hieter P., Boeke J.D. Designer deletion strains derived from Saccharomyces cerevisiae s288c: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 1998, 14:115-132.
-
(1998)
Yeast
, vol.14
, pp. 115-132
-
-
Brachmann, C.B.1
Davies, A.2
Cost, G.J.3
Caputo, E.4
Li, J.5
Hieter, P.6
Boeke, J.D.7
-
16
-
-
44449171842
-
Improvement of ethanol productivity during xylose and glucose co-fermentation by xylose-assimilating S. cerevisiae via expression of glucose transporter sut1
-
Katahira S., Ito M., Takema H., Fujita Y., Tanino T., Tanaka T., Fukuda H., Kondo A. Improvement of ethanol productivity during xylose and glucose co-fermentation by xylose-assimilating S. cerevisiae via expression of glucose transporter sut1. Enzyme Microb. Technol. 2008, 43:115-119.
-
(2008)
Enzyme Microb. Technol.
, vol.43
, pp. 115-119
-
-
Katahira, S.1
Ito, M.2
Takema, H.3
Fujita, Y.4
Tanino, T.5
Tanaka, T.6
Fukuda, H.7
Kondo, A.8
-
17
-
-
69949084139
-
A method for enzyme quenching in microbial metabolome analysis successfully applied to gram-positive and gram-negative bacteria and yeast
-
Spura J., Reimer L.C., Wieloch P., Schreiber K., Buchinger S., Schomburg D. A method for enzyme quenching in microbial metabolome analysis successfully applied to gram-positive and gram-negative bacteria and yeast. Anal. Biochem. 2009, 394:192-201.
-
(2009)
Anal. Biochem.
, vol.394
, pp. 192-201
-
-
Spura, J.1
Reimer, L.C.2
Wieloch, P.3
Schreiber, K.4
Buchinger, S.5
Schomburg, D.6
-
18
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
Fiehn O., Kopka J., Dormann P., Altmann T., Trethewey R.N., Willmitzer L. Metabolite profiling for plant functional genomics. Nat. Biotechnol. 2000, 18:1157-1161.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dormann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
19
-
-
77954439868
-
Massbank: a public repository for sharing mass spectral data for life sciences
-
and other 25 authors
-
Horai H., Arita M., Kanaya S., Nihei Y., Ikeda T., Suwa K., Ojima Y., Tanaka K., Tanaka S., Aoshima K. Massbank: a public repository for sharing mass spectral data for life sciences. J. Mass Spectrom. 2010, 45:703-714. and other 25 authors.
-
(2010)
J. Mass Spectrom.
, vol.45
, pp. 703-714
-
-
Horai, H.1
Arita, M.2
Kanaya, S.3
Nihei, Y.4
Ikeda, T.5
Suwa, K.6
Ojima, Y.7
Tanaka, K.8
Tanaka, S.9
Aoshima, K.10
-
20
-
-
34248580879
-
Gas chromatography mass spectrometry-based metabolite profiling in plants
-
Lisec J., Schauer N., Kopka J., Willmitzer L., Fernie A.R. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat. Protoc. 2006, 1:387-396.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 387-396
-
-
Lisec, J.1
Schauer, N.2
Kopka, J.3
Willmitzer, L.4
Fernie, A.R.5
-
21
-
-
80052263466
-
Practical non-targeted gas chromatography/mass spectrometry-based metabolomics platform for metabolic phenotype analysis
-
Tsugawa H., Bamba T., Shinohara M., Nishiumi S., Yoshida M., Fukusaki E. Practical non-targeted gas chromatography/mass spectrometry-based metabolomics platform for metabolic phenotype analysis. J. Biosci. Bioeng. 2011, 112:292-298.
-
(2011)
J. Biosci. Bioeng.
, vol.112
, pp. 292-298
-
-
Tsugawa, H.1
Bamba, T.2
Shinohara, M.3
Nishiumi, S.4
Yoshida, M.5
Fukusaki, E.6
-
22
-
-
79955501451
-
GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA)
-
Tsugawa H., Tsujimoto Y., Arita M., Bamba T., Fukusaki E. GC/MS based metabolomics: development of a data mining system for metabolite identification by using soft independent modeling of class analogy (SIMCA). BMC Bioinformatics 2011, 12:131.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 131
-
-
Tsugawa, H.1
Tsujimoto, Y.2
Arita, M.3
Bamba, T.4
Fukusaki, E.5
-
23
-
-
68049109441
-
Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry
-
Soga T., Igarashi K., Ito C., Mizobuchi K., Zimmermann H.P., Tomita M. Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry. Anal. Chem. 2009, 81:6165-6174.
-
(2009)
Anal. Chem.
, vol.81
, pp. 6165-6174
-
-
Soga, T.1
Igarashi, K.2
Ito, C.3
Mizobuchi, K.4
Zimmermann, H.P.5
Tomita, M.6
-
24
-
-
33746606019
-
Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry
-
Bajad S.U., Lu W., Kimball E.H., Yuan J., Peterson C., Rabinowitz J.D. Separation and quantitation of water soluble cellular metabolites by hydrophilic interaction chromatography-tandem mass spectrometry. J. Chromatogr. A 2006, 1125:76-88.
-
(2006)
J. Chromatogr. A
, vol.1125
, pp. 76-88
-
-
Bajad, S.U.1
Lu, W.2
Kimball, E.H.3
Yuan, J.4
Peterson, C.5
Rabinowitz, J.D.6
-
25
-
-
79956090481
-
An LC-MS-based chemical and analytical method for targeted metabolite quantification in the model Cyanobacterium synechococcus sp. PCC 7002
-
Bennette N.B., Eng J.F., Dismukes G.C. An LC-MS-based chemical and analytical method for targeted metabolite quantification in the model Cyanobacterium synechococcus sp. PCC 7002. Anal. Chem. 2011, 83:3808-3816.
-
(2011)
Anal. Chem.
, vol.83
, pp. 3808-3816
-
-
Bennette, N.B.1
Eng, J.F.2
Dismukes, G.C.3
-
26
-
-
34249088019
-
Sampling for metabolome analysis of microorganisms
-
Bolten C.J., Kiefer P., Letisse F., Portais J.C., Wittmann C. Sampling for metabolome analysis of microorganisms. Anal. Chem. 2007, 79:3843-3849.
-
(2007)
Anal. Chem.
, vol.79
, pp. 3843-3849
-
-
Bolten, C.J.1
Kiefer, P.2
Letisse, F.3
Portais, J.C.4
Wittmann, C.5
-
27
-
-
69749110125
-
Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics
-
Canelas A.B., Ten Pierick A., Ras C., Seifar R.M., Van Dam J.C., Van Gulik W.M., Heijnen J.J. Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics. Anal. Chem. 2009, 81:7379-7389.
-
(2009)
Anal. Chem.
, vol.81
, pp. 7379-7389
-
-
Canelas, A.B.1
Ten Pierick, A.2
Ras, C.3
Seifar, R.M.4
Van Dam, J.C.5
Van Gulik, W.M.6
Heijnen, J.J.7
-
28
-
-
77950629593
-
Fast sampling for quantitative microbial metabolomics
-
Van Gulik W.M. Fast sampling for quantitative microbial metabolomics. Curr. Opin. Biotechnol. 2010, 21:27-34.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 27-34
-
-
Van Gulik, W.M.1
-
29
-
-
0037093109
-
Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry
-
Soga T., Ueno Y., Naraoka H., Ohashi Y., Tomita M., Nishioka T. Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry. Anal. Chem. 2002, 74:2233-2239.
-
(2002)
Anal. Chem.
, vol.74
, pp. 2233-2239
-
-
Soga, T.1
Ueno, Y.2
Naraoka, H.3
Ohashi, Y.4
Tomita, M.5
Nishioka, T.6
-
30
-
-
69249150110
-
Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli
-
Yuan J., Doucette C.D., Fowler W.U., Feng X.J., Piazza M., Rabitz H.A., Wingreen N.S., Rabinowitz J.D. Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli. Mol. Syst. Biol 2009, 5:302.
-
(2009)
Mol. Syst. Biol
, vol.5
, pp. 302
-
-
Yuan, J.1
Doucette, C.D.2
Fowler, W.U.3
Feng, X.J.4
Piazza, M.5
Rabitz, H.A.6
Wingreen, N.S.7
Rabinowitz, J.D.8
-
31
-
-
68349130318
-
Metabolic quenching of Corynebacterium glutamicum: efficiency of methods and impact of cold shock
-
Wellerdiek M., Winterhoff D., Reule W., Brandner J., Oldiges M. Metabolic quenching of Corynebacterium glutamicum: efficiency of methods and impact of cold shock. Bioprocess Biosyst. Eng. 2009, 32:581-592.
-
(2009)
Bioprocess Biosyst. Eng.
, vol.32
, pp. 581-592
-
-
Wellerdiek, M.1
Winterhoff, D.2
Reule, W.3
Brandner, J.4
Oldiges, M.5
-
32
-
-
67651165085
-
A simple and immediate method for simultaneously evaluating expression level and plasmid maintenance in yeast
-
Ishii J., Izawa K., Matsumura S., Wakamura K., Tanino T., Tanaka T., Ogino C., Fukuda H., Kondo A. A simple and immediate method for simultaneously evaluating expression level and plasmid maintenance in yeast. J. Biochem. 2009, 145:701-708.
-
(2009)
J. Biochem.
, vol.145
, pp. 701-708
-
-
Ishii, J.1
Izawa, K.2
Matsumura, S.3
Wakamura, K.4
Tanino, T.5
Tanaka, T.6
Ogino, C.7
Fukuda, H.8
Kondo, A.9
-
33
-
-
34447281116
-
Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis
-
Hirasawa T., Yoshikawa K., Nakakura Y., Nagahisa K., Furusawa C., Katakura Y., Shimizu H., Shioya S. Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis. J. Biotechnol. 2007, 131:34-44.
-
(2007)
J. Biotechnol.
, vol.131
, pp. 34-44
-
-
Hirasawa, T.1
Yoshikawa, K.2
Nakakura, Y.3
Nagahisa, K.4
Furusawa, C.5
Katakura, Y.6
Shimizu, H.7
Shioya, S.8
-
34
-
-
58149337066
-
Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae
-
Yoshikawa K., Tanaka T., Furusawa C., Nagahisa K., Hirasawa T., Shimizu H. Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae. FEMS Yeast Res. 2009, 9:32-44.
-
(2009)
FEMS Yeast Res.
, vol.9
, pp. 32-44
-
-
Yoshikawa, K.1
Tanaka, T.2
Furusawa, C.3
Nagahisa, K.4
Hirasawa, T.5
Shimizu, H.6
-
35
-
-
70350555437
-
Trehalose promotes the survival of Saccharomyces cerevisiae during lethal ethanol stress, but does not influence growth under sublethal ethanol stress
-
Bandara A., Fraser S., Chambers P.J., Stanley G.A. Trehalose promotes the survival of Saccharomyces cerevisiae during lethal ethanol stress, but does not influence growth under sublethal ethanol stress. FEMS Yeast Res. 2009, 9:1208-1216.
-
(2009)
FEMS Yeast Res.
, vol.9
, pp. 1208-1216
-
-
Bandara, A.1
Fraser, S.2
Chambers, P.J.3
Stanley, G.A.4
|