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Volumn 9, Issue 1, 2009, Pages 32-44

Comprehensive phenotypic analysis for identification of genes affecting growth under ethanol stress in Saccharomyces cerevisiae

Author keywords

Ethanol stress; Osmotic stress; Yeast; Yeast deletion collection

Indexed keywords

ADAPTATION, PHYSIOLOGICAL; ANTIFUNGAL AGENTS; ETHANOL; GENE DELETION; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; OSMOTIC PRESSURE; SACCHAROMYCES CEREVISIAE;

EID: 58149337066     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/j.1567-1364.2008.00456.x     Document Type: Article
Times cited : (195)

References (48)
  • 1
    • 0022387355 scopus 로고
    • Role of mitochondria in ethanol tolerance of Saccharomyces cerevisiae
    • Aguilera A Benítez T (1985) Role of mitochondria in ethanol tolerance of Saccharomyces cerevisiae. Arch Microbiol 142 : 389 392.
    • (1985) Arch Microbiol , vol.142 , pp. 389-392
    • Aguilera, A.1    Benítez, T.2
  • 2
    • 0035037510 scopus 로고    scopus 로고
    • Pex12p of Saccharomyces cerevisiae is a component of a multi-protein complex essential for peroxisomal matrix protein import
    • Albertini M, Girzalsky W, Veenhuis M Kunau WH (2001) Pex12p of Saccharomyces cerevisiae is a component of a multi-protein complex essential for peroxisomal matrix protein import. Eur J Cell Biol 80 : 257 270.
    • (2001) Eur J Cell Biol , vol.80 , pp. 257-270
    • Albertini, M.1    Girzalsky, W.2    Veenhuis, M.3    Kunau, W.H.4
  • 4
    • 0031454272 scopus 로고    scopus 로고
    • Stress tolerance: The key to effective strains of industrial baker's yeast
    • Attfield PV (1997) Stress tolerance: the key to effective strains of industrial baker's yeast. Nat Biotechnol 15 : 1351 1357.
    • (1997) Nat Biotechnol , vol.15 , pp. 1351-1357
    • Attfield, P.V.1
  • 5
    • 0022896188 scopus 로고
    • Molecular cloning and characterization of ARO7-OSM2, a single yeast gene necessary for chorismate mutase activity and growth in hypertonic medium
    • Ball SG, Wickner RB, Cottarel G, Schaus M Tirtiaux C (1986) Molecular cloning and characterization of ARO7-OSM2, a single yeast gene necessary for chorismate mutase activity and growth in hypertonic medium. Mol Gen Genet 205 : 326 330.
    • (1986) Mol Gen Genet , vol.205 , pp. 326-330
    • Ball, S.G.1    Wickner, R.B.2    Cottarel, G.3    Schaus, M.4    Tirtiaux, C.5
  • 6
    • 0035114070 scopus 로고    scopus 로고
    • Osmotic stress causes a G1 cell cycle delay and downregulation of Cln3/Cdc28 activity in Saccharomyces cerevisiae
    • Bellí G, Garí E, Aldea M Herrero E (2001) Osmotic stress causes a G1 cell cycle delay and downregulation of Cln3/Cdc28 activity in Saccharomyces cerevisiae. Mol Microbiol 39 : 1022 1035.
    • (2001) Mol Microbiol , vol.39 , pp. 1022-1035
    • Bellí, G.1    Garí, E.2    Aldea, M.3    Herrero, E.4
  • 7
    • 11444254468 scopus 로고    scopus 로고
    • Structural and functional analysis of the interaction of the AAA-peroxins Pex1p and Pex6p
    • Birschmann I, Rosenkranz K, Erdmann R Kunau WH (2005) Structural and functional analysis of the interaction of the AAA-peroxins Pex1p and Pex6p. FEBS J 272 : 47 58.
    • (2005) FEBS J , vol.272 , pp. 47-58
    • Birschmann, I.1    Rosenkranz, K.2    Erdmann, R.3    Kunau, W.H.4
  • 8
    • 20544447129 scopus 로고    scopus 로고
    • Protein transport from the late Golgi to the vacuole in the yeast Saccharomyces cerevisiae
    • Bowers K Stevens TH (2005) Protein transport from the late Golgi to the vacuole in the yeast Saccharomyces cerevisiae. Biochim Biophys Acta 1744 : 438 454.
    • (2005) Biochim Biophys Acta , vol.1744 , pp. 438-454
    • Bowers, K.1    Stevens, T.H.2
  • 9
    • 0037657596 scopus 로고    scopus 로고
    • Loss of compartmentalization causes misregulation of lysine biosynthesis in peroxisome-deficient yeast cells
    • Breitling R, Sharif O, Hartman ML Krisans SK (2002) Loss of compartmentalization causes misregulation of lysine biosynthesis in peroxisome-deficient yeast cells. Eukaryot Cell 1 : 978 986.
    • (2002) Eukaryot Cell , vol.1 , pp. 978-986
    • Breitling, R.1    Sharif, O.2    Hartman, M.L.3    Krisans, S.K.4
  • 10
    • 0030767309 scopus 로고    scopus 로고
    • Pex14p is a member of the protein linkage map of Pex5p
    • Brocard C, Lametschwandtner G, Koudelka R Hartig A (1997) Pex14p is a member of the protein linkage map of Pex5p. EMBO J 16 : 5491 5500.
    • (1997) EMBO J , vol.16 , pp. 5491-5500
    • Brocard, C.1    Lametschwandtner, G.2    Koudelka, R.3    Hartig, A.4
  • 11
    • 1842853027 scopus 로고    scopus 로고
    • Peroxisome biogenesis and the role of protein import
    • Brown LA Baker A (2003) Peroxisome biogenesis and the role of protein import. J Cell Mol Med 7 : 388 400.
    • (2003) J Cell Mol Med , vol.7 , pp. 388-400
    • Brown, L.A.1    Baker, A.2
  • 12
    • 2542542843 scopus 로고    scopus 로고
    • Identification of Ald6p as the target of a class of small-molecule suppressors of FK506 and their use in network dissection
    • Butcher RA Schreiber SL (2004) Identification of Ald6p as the target of a class of small-molecule suppressors of FK506 and their use in network dissection. Proc Natl Acad Sci USA 101 : 7868 7873.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7868-7873
    • Butcher, R.A.1    Schreiber, S.L.2
  • 13
    • 33745737918 scopus 로고    scopus 로고
    • Phosphorylation of Hsl1 by Hog1 leads to a G2 arrest essential for cell survival at high osmolarity
    • Clotet J, Escoté X, Adrover MA, Yaakov G, Garí E, Aldea M, de Nadal E Posas F (2006) Phosphorylation of Hsl1 by Hog1 leads to a G2 arrest essential for cell survival at high osmolarity. EMBO J 25 : 2338 2346.
    • (2006) EMBO J , vol.25 , pp. 2338-2346
    • Clotet, J.1    Escoté, X.2    Adrover, M.A.3    Yaakov, G.4    Garí, E.5    Aldea, M.6    De Nadal, E.7    Posas, F.8
  • 14
    • 23944515281 scopus 로고    scopus 로고
    • A genome-wide screen for Saccharomyces cerevisiae nonessential genes involved in mannosyl phosphate transfer to mannoprotein-linked oligosaccharides
    • Corbacho I, Olivero I Hernández LM (2005) A genome-wide screen for Saccharomyces cerevisiae nonessential genes involved in mannosyl phosphate transfer to mannoprotein-linked oligosaccharides. Fungal Genet Biol 42 : 773 790.
    • (2005) Fungal Genet Biol , vol.42 , pp. 773-790
    • Corbacho, I.1    Olivero, I.2    Hernández, L.M.3
  • 15
    • 0026742831 scopus 로고
    • Lipid content of Saccharomyces cerevisiae strains with different degrees of ethanol tolerance
    • del Castillo Agudo L (1992) Lipid content of Saccharomyces cerevisiae strains with different degrees of ethanol tolerance. Appl Microbiol Biotechnol 37 : 647 651.
    • (1992) Appl Microbiol Biotechnol , vol.37 , pp. 647-651
    • Del Castillo Agudo, L.1
  • 16
    • 1842291916 scopus 로고
    • Isolation of peroxisome-deficient mutants of Saccharomyces cerevisiae
    • Erdmann R, Veenhuis M, Mertens D Kunau WH (1989) Isolation of peroxisome-deficient mutants of Saccharomyces cerevisiae. P Natl Acad Sci USA 86 : 5419 5423.
    • (1989) P Natl Acad Sci USA , vol.86 , pp. 5419-5423
    • Erdmann, R.1    Veenhuis, M.2    Mertens, D.3    Kunau, W.H.4
  • 17
    • 5444253797 scopus 로고    scopus 로고
    • Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1
    • Escoté X, Zapater M, Clotet J Posas F (2004) Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1. Nat Cell Biol 6 : 997 1002.
    • (2004) Nat Cell Biol , vol.6 , pp. 997-1002
    • Escoté, X.1    Zapater, M.2    Clotet, J.3    Posas, F.4
  • 19
    • 0037144118 scopus 로고    scopus 로고
    • The yeast SR protein kinase Sky1p modulates salt tolerance, membrane potential and the Trk1,2 potassium transporter
    • Forment J, Mulet JM, Vicente O Serrano R (2002) The yeast SR protein kinase Sky1p modulates salt tolerance, membrane potential and the Trk1,2 potassium transporter. Biochim Biophys Acta 1565 : 36 40.
    • (2002) Biochim Biophys Acta , vol.1565 , pp. 36-40
    • Forment, J.1    Mulet, J.M.2    Vicente, O.3    Serrano, R.4
  • 20
    • 33745886222 scopus 로고    scopus 로고
    • The genome-wide screening of yeast deletion mutants to identify the genes required for tolerance to ethanol and other alcohols
    • Fujita K, Matsuyama A, Kobayashi Y Iwahashi H (2006) The genome-wide screening of yeast deletion mutants to identify the genes required for tolerance to ethanol and other alcohols. FEMS Yeast Res 6 : 744 750.
    • (2006) FEMS Yeast Res , vol.6 , pp. 744-750
    • Fujita, K.1    Matsuyama, A.2    Kobayashi, Y.3    Iwahashi, H.4
  • 21
    • 18944396525 scopus 로고    scopus 로고
    • ERS1 encodes a functional homologue of the human lysosomal cystine transporter
    • Gao XD, Wang J, Keppler-Ross S Dean N (2005) ERS1 encodes a functional homologue of the human lysosomal cystine transporter. FEBS J 272 : 2497 2511.
    • (2005) FEBS J , vol.272 , pp. 2497-2511
    • Gao, X.D.1    Wang, J.2    Keppler-Ross, S.3    Dean, N.4
  • 23
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method
    • Gietz RD Woods RA (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 350 : 87 96.
    • (2002) Methods Enzymol , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2
  • 24
    • 38349086957 scopus 로고    scopus 로고
    • Use of the TRP1 auxotrophic marker for gene disruption and phenotypic analysis in yeast: A note of warning
    • González A, Larroy C, Biosca JA Ariño J (2007) Use of the TRP1 auxotrophic marker for gene disruption and phenotypic analysis in yeast: a note of warning. FEMS Yeast Res 8 : 2 5.
    • (2007) FEMS Yeast Res , vol.8 , pp. 2-5
    • González, A.1    Larroy, C.2    Biosca, J.A.3    Ariño, J.4
  • 25
    • 0034677197 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae pex3p and pex19p are required for proper localization and stability of peroxisomal membrane proteins
    • Hettema EH, Girzalsky W, van Den Berg M, Erdmann R Distel B (2000) Saccharomyces cerevisiae pex3p and pex19p are required for proper localization and stability of peroxisomal membrane proteins. EMBO J 19 : 223 233.
    • (2000) EMBO J , vol.19 , pp. 223-233
    • Hettema, E.H.1    Girzalsky, W.2    Van Den Berg, M.3    Erdmann, R.4    Distel, B.5
  • 26
    • 34447281116 scopus 로고    scopus 로고
    • Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis
    • Hirasawa T, Yoshikawa K, Nakakura Y, Nagahisa K, Furusawa C, Katakura Y, Shimizu H Shioya S (2007) Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis. J Biotechnol 131 : 34 44.
    • (2007) J Biotechnol , vol.131 , pp. 34-44
    • Hirasawa, T.1    Yoshikawa, K.2    Nakakura, Y.3    Nagahisa, K.4    Furusawa, C.5    Katakura, Y.6    Shimizu, H.7    Shioya, S.8
  • 27
    • 0036282743 scopus 로고    scopus 로고
    • Osmotic stress signaling and osmoadaptation in yeasts
    • Hohmann S (2002) Osmotic stress signaling and osmoadaptation in yeasts. Microbiol Mol Biol Rev 66 : 300 372.
    • (2002) Microbiol Mol Biol Rev , vol.66 , pp. 300-372
    • Hohmann, S.1
  • 28
    • 0031953256 scopus 로고    scopus 로고
    • Pex17p of Saccharomyces cerevisiae is a novel peroxin and component of the peroxisomal protein translocation machinery
    • Huhse B, Rehling P, Albertini M, Blank L, Meller K Kunau WH (1998) Pex17p of Saccharomyces cerevisiae is a novel peroxin and component of the peroxisomal protein translocation machinery. J Cell Biol 140 : 49 60.
    • (1998) J Cell Biol , vol.140 , pp. 49-60
    • Huhse, B.1    Rehling, P.2    Albertini, M.3    Blank, L.4    Meller, K.5    Kunau, W.H.6
  • 29
    • 36448960911 scopus 로고    scopus 로고
    • Formation of cytoplasmic P-bodies in sake yeast during Japanese sake brewing and wine making
    • Izawa S, Kita T, Ikeda K, Miki T Inoue Y (2007) Formation of cytoplasmic P-bodies in sake yeast during Japanese sake brewing and wine making. Biosci Biotechnol Biochem 71 : 2800 2807.
    • (2007) Biosci Biotechnol Biochem , vol.71 , pp. 2800-2807
    • Izawa, S.1    Kita, T.2    Ikeda, K.3    Miki, T.4    Inoue, Y.5
  • 30
    • 0023898722 scopus 로고
    • Yeast cell viability under conditions of high temperature and ethanol concentrations depends on the mitochondrial genome
    • Jiménez J Benítez T (1988) Yeast cell viability under conditions of high temperature and ethanol concentrations depends on the mitochondrial genome. Curr Genet 13 : 461 469.
    • (1988) Curr Genet , vol.13 , pp. 461-469
    • Jiménez, J.1    Benítez, T.2
  • 31
    • 0033549487 scopus 로고    scopus 로고
    • Pex22p of Pichia pastoris, essential for peroxisomal matrix protein import, anchors the ubiquitin-conjugating enzyme, Pex4p, on the peroxisomal membrane
    • Koller A, Snyder WB, Faber KN, Wenzel TJ, Rangell L, Keller GA Subramani S (1999) Pex22p of Pichia pastoris, essential for peroxisomal matrix protein import, anchors the ubiquitin-conjugating enzyme, Pex4p, on the peroxisomal membrane. J Cell Biol 146 : 99 112.
    • (1999) J Cell Biol , vol.146 , pp. 99-112
    • Koller, A.1    Snyder, W.B.2    Faber, K.N.3    Wenzel, T.J.4    Rangell, L.5    Keller, G.A.6    Subramani, S.7
  • 33
    • 0032750635 scopus 로고    scopus 로고
    • Biodiversity of the P450 catalytic cycle: Yeast cytochrome b5/NADH cytochrome b5 reductase complex efficiently drives the entire sterol 14-demethylation (CYP51) reaction
    • Lamb DC, Kelly DE, Manning NJ, Kaderbhai MA Kelly SL (1999) Biodiversity of the P450 catalytic cycle: yeast cytochrome b5/NADH cytochrome b5 reductase complex efficiently drives the entire sterol 14-demethylation (CYP51) reaction. FEBS Lett 462 : 283 288.
    • (1999) FEBS Lett , vol.462 , pp. 283-288
    • Lamb, D.C.1    Kelly, D.E.2    Manning, N.J.3    Kaderbhai, M.A.4    Kelly, S.L.5
  • 34
    • 0018088393 scopus 로고
    • Effect of mutation in the aromatic amino acid pathway on sporulation of Saccharomyces cerevisiae
    • Lucchini G, Biraghi A, Carbone ML, de Scrilli A Magni GE (1978) Effect of mutation in the aromatic amino acid pathway on sporulation of Saccharomyces cerevisiae. J Bacteriol 136 : 55 62.
    • (1978) J Bacteriol , vol.136 , pp. 55-62
    • Lucchini, G.1    Biraghi, A.2    Carbone, M.L.3    De Scrilli, A.4    Magni, G.E.5
  • 35
    • 0033779748 scopus 로고    scopus 로고
    • Internal trehalose protects endocytosis from inhibition by ethanol in Saccharomyces cerevisiae
    • Lucero P, Peñalver E, Moreno E Lagunas R (2000) Internal trehalose protects endocytosis from inhibition by ethanol in Saccharomyces cerevisiae. Appl Environ Microbiol 66 : 4456 4461.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4456-4461
    • Lucero, P.1    Peñalver, E.2    Moreno, E.3    Lagunas, R.4
  • 36
    • 0028867333 scopus 로고
    • The heat shock and ethanol stress responses of yeast exhibit extensive similarity and functional overlap
    • Piper PW (1995) The heat shock and ethanol stress responses of yeast exhibit extensive similarity and functional overlap. FEMS Microbiol Lett 134 : 121 127.
    • (1995) FEMS Microbiol Lett , vol.134 , pp. 121-127
    • Piper, P.W.1
  • 38
    • 0032506120 scopus 로고    scopus 로고
    • The three yeast a kinases have specific signaling functions in pseudohyphal growth
    • Robertson LS Fink GR (1998) The three yeast A kinases have specific signaling functions in pseudohyphal growth. P Natl Acad Sci USA 95 : 13783 13787.
    • (1998) P Natl Acad Sci USA , vol.95 , pp. 13783-13787
    • Robertson, L.S.1    Fink, G.R.2
  • 39
    • 0342592251 scopus 로고    scopus 로고
    • Intracellular acidification does not account for inhibition of Saccharomyces cerevisiae growth in the presence of ethanol
    • Rosa MF Sá-Correia I (1996) Intracellular acidification does not account for inhibition of Saccharomyces cerevisiae growth in the presence of ethanol. FEMS Microbiol Lett 135 : 271 274.
    • (1996) FEMS Microbiol Lett , vol.135 , pp. 271-274
    • Rosa, M.F.1    Sá-Correia, I.2
  • 40
    • 9144257282 scopus 로고    scopus 로고
    • The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
    • Ruepp A, Zollner A, Maier D et al 2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 32 : 5539 5545.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5539-5545
    • Ruepp, A.1    Zollner, A.2    Maier, D.3    Al, E.4
  • 41
    • 4344592252 scopus 로고    scopus 로고
    • The uses of genome-wide yeast mutant collections
    • Scherens B Goffeau A (2004) The uses of genome-wide yeast mutant collections. Genome Biol 5 : 229.
    • (2004) Genome Biol , vol.5 , pp. 229
    • Scherens, B.1    Goffeau, A.2
  • 42
    • 34250855702 scopus 로고    scopus 로고
    • Desensitization of feedback inhibition of the Saccharomyces cerevisiae gamma-glutamyl kinase enhances proline accumulation and freezing tolerance
    • Sekine T, Kawaguchi A, Hamano Y Takagi H (2007) Desensitization of feedback inhibition of the Saccharomyces cerevisiae gamma-glutamyl kinase enhances proline accumulation and freezing tolerance. Appl Environ Microbiol 73 : 4011 4019.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4011-4019
    • Sekine, T.1    Kawaguchi, A.2    Hamano, Y.3    Takagi, H.4
  • 43
    • 29144482938 scopus 로고    scopus 로고
    • Effect of l-proline on sake brewing and ethanol stress in Saccharomyces cerevisiae
    • Takagi H, Takaoka M, Kawaguchi A Kubo Y (2005) Effect of l-proline on sake brewing and ethanol stress in Saccharomyces cerevisiae. Appl Environ Microbiol 71 : 8656 8662.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8656-8662
    • Takagi, H.1    Takaoka, M.2    Kawaguchi, A.3    Kubo, Y.4
  • 44
    • 4944234419 scopus 로고    scopus 로고
    • Stress response in yeast mRNA export factor: Reversible changes in Rat8p localization are caused by ethanol stress but not heat shock
    • Takemura R, Inoue Y Izawa S (2004) Stress response in yeast mRNA export factor: reversible changes in Rat8p localization are caused by ethanol stress but not heat shock. J Cell Sci 117 : 4189 4197.
    • (2004) J Cell Sci , vol.117 , pp. 4189-4197
    • Takemura, R.1    Inoue, Y.2    Izawa, S.3
  • 45
    • 33646336879 scopus 로고    scopus 로고
    • Genome-wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress
    • van Voorst F, Houghton-Larsen J, Jonson L, Kielland-Brandt MC Brandt A (2006) Genome-wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress. Yeast 23 : 351 359.
    • (2006) Yeast , vol.23 , pp. 351-359
    • Van Voorst, F.1    Houghton-Larsen, J.2    Jonson, L.3    Kielland-Brandt, M.C.4    Brandt, A.5
  • 46
    • 0347994900 scopus 로고    scopus 로고
    • High-resolution yeast phenomics resolves different physiological features in the saline response
    • Warringer J, Ericson E, Fernandez L, Nerman O Blomberg A (2003) High-resolution yeast phenomics resolves different physiological features in the saline response. Proc Natl Acad Sci USA 100 : 15724 15729.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15724-15729
    • Warringer, J.1    Ericson, E.2    Fernandez, L.3    Nerman, O.4    Blomberg, A.5
  • 47
    • 0033529707 scopus 로고    scopus 로고
    • Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
    • Winzeler EA, Shoemaker DD, Astromoff A et al 1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285 : 901 906.
    • (1999) Science , vol.285 , pp. 901-906
    • Winzeler, E.A.1    Shoemaker, D.D.2    Astromoff, A.3    Al, E.4
  • 48
    • 0037337660 scopus 로고    scopus 로고
    • Ethanol tolerance in the yeast Saccharomyces cerevisiae is dependent on cellular oleic acid content
    • You KM, Rosenfield CL Knipple DC (2003) Ethanol tolerance in the yeast Saccharomyces cerevisiae is dependent on cellular oleic acid content. Appl Environ Microbiol 69 : 1499 1503.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1499-1503
    • You, K.M.1    Rosenfield, C.L.2    Knipple, D.C.3


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