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Volumn 29, Issue 1, 2012, Pages 7-11

The 1.688 repetitive DNA of drosophila: Concerted evolution at different genomic scales and association with genes

Author keywords

Concerted evolution; Drosophila melanogaster; Molecular drive; Recombination; Repetitive DNA; Satellite DNA

Indexed keywords

REPETITIVE DNA; SATELLITE DNA;

EID: 84859916328     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr173     Document Type: Article
Times cited : (86)

References (32)
  • 1
    • 0033746717 scopus 로고    scopus 로고
    • Pericentromeric regions containing 1.688 satellite DNA sequences show anti-kinetochore antibody staining in prometaphase chromosomes of Drosophila melanogaster
    • Abad JP, Agudo M, Molina I, Losada A, Ripoll P, Villasante A. 2000. Pericentromeric regions containing 1.688 satellite DNA sequences show anti-kinetochore antibody staining in prometaphase chromosomes of Drosophila melanogaster. Mol Gen Genet. 264:371-377.
    • (2000) Mol Gen Genet. , vol.264 , pp. 371-377
    • Abad, J.P.1    Agudo, M.2    Molina, I.3    Losada, A.4    Ripoll, P.5    Villasante, A.6
  • 2
    • 0019248018 scopus 로고
    • Molecular arrangement and evolution of heterochromatic DNA
    • Brutlag D. 1980. Molecular arrangement and evolution of heterochromatic DNA. Annu Rev Genet. 14:121-144.
    • (1980) Annu Rev Genet. , vol.14 , pp. 121-144
    • Brutlag, D.1
  • 3
    • 0022571508 scopus 로고
    • The evolution of restricted recombination and the accumulation of repeated DNA sequences
    • Charlesworth B, Langley CH, Stephan W. 1986. The evolution of restricted recombination and the accumulation of repeated DNA sequences. Genetics 112:947-962. (Pubitemid 16111287)
    • (1986) Genetics , vol.112 , Issue.4 , pp. 947-962
    • Charlesworth, B.1    Langley, C.H.2    Stephan, W.3
  • 4
    • 0026549151 scopus 로고
    • A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin
    • DiBartolomeis SM, Tartof KD, Jackson FR. 1992. A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin. Nucleic Acids Res. 20:1113-1116.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1113-1116
    • DiBartolomeis, S.M.1    Tartof, K.D.2    Jackson, F.R.3
  • 5
    • 45849088092 scopus 로고    scopus 로고
    • The effects of recombination rate on the distribution and abundance of transposable elements
    • Dolgin ES, Charlesworth B. 2008. The effects of recombination rate on the distribution and abundance of transposable elements. Genetics 178:2169-2177.
    • (2008) Genetics , vol.178 , pp. 2169-2177
    • Dolgin, E.S.1    Charlesworth, B.2
  • 6
    • 0020478245 scopus 로고
    • Molecular drive: A cohesive mode of species evolution
    • Dover GA. 1982. Molecular drive: A cohesive mode of species evolution. Nature 199:111-117.
    • (1982) Nature , vol.199 , pp. 111-117
    • Dover, G.A.1
  • 7
    • 0027056678 scopus 로고
    • Functional elements in Drosophila melanogaster heterochromatin
    • Gatti M, Pimpinelli S. 1992. Functional elements in Drosophila melanogaster heterochromatin. Annu Rev Genet. 26:239-275. (Pubitemid 23022610)
    • (1992) Annual Review of Genetics , vol.26 , pp. 239-275
    • Gatti, M.1    Pimpinelli, S.2
  • 8
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 9
    • 0018641970 scopus 로고
    • 3 satellite DNA of Drosophila melanogaster
    • DOI 10.1016/0022-2836(79)90447-9
    • Hsieh T, Brutlag D. 1979. Sequence and sequence variation within the 1.688 g/cm3 satellite DNA of Drosophila melanogaster. J Mol Biol. 135:465-481. (Pubitemid 10173572)
    • (1979) Journal of Molecular Biology , vol.135 , Issue.2 , pp. 465-481
    • Hsieh, T.1    Brutlag, D.2
  • 10
    • 0030888889 scopus 로고    scopus 로고
    • Evolutionary tuning knobs
    • DOI 10.1016/S0160-9327(97)01005-3
    • King DG, Soller M, Kashi Y. 1997. Evolutionary tuning knobs. Endeavour. 21:36-40. (Pubitemid 27191080)
    • (1997) Endeavour , vol.21 , Issue.1 , pp. 36-40
    • King, D.G.1    Soller, M.2    Kashi, Y.3
  • 11
    • 0032928403 scopus 로고    scopus 로고
    • Dynamic organization of the β-heterochromatin in the drosophila melanogaster polytene X chromosome
    • DOI 10.1007/s004380050923
    • Koryakov DE, Alekseyenko AA, Zhimulev IF. 1999. Dynamic organization of the beta-heterochromatin in the Drosophila melanogaster polytene X chromosome. Mol Gen Genet. 260:503-509. (Pubitemid 29046155)
    • (1999) Molecular and General Genetics , vol.260 , Issue.6 , pp. 503-509
    • Koryakov, D.E.1    Alekseyenko, A.A.2    Zhimulev, I.F.3
  • 12
    • 78049450865 scopus 로고    scopus 로고
    • The nonregular orbit: Three satellite DNAs in Drosophila martensis (buzzatii complex, repleta group) followed three different evolutionary pathways
    • Kuhn GCS, Schwarzacher T, Heslop-Harrison JS. 2010. The nonregular orbit: Three satellite DNAs in Drosophila martensis (buzzatii complex, repleta group) followed three different evolutionary pathways. Mol Gen Genomics. 284:251-262.
    • (2010) Mol Gen Genomics. , vol.284 , pp. 251-262
    • Kuhn, G.C.S.1    Schwarzacher, T.2    Heslop-Harrison, J.S.3
  • 13
    • 40349110967 scopus 로고    scopus 로고
    • Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster
    • Kuhn GCS, Sene FM, Moreira-Filho O, Schwarzacher T, Heslop-Harrison JS. 2008. Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster. Chromosome Res. 16:307-324.
    • (2008) Chromosome Res. , vol.16 , pp. 307-324
    • Kuhn, G.C.S.1    Sene, F.M.2    Moreira-Filho, O.3    Schwarzacher, T.4    Heslop-Harrison, J.S.5
  • 14
    • 0027261149 scopus 로고
    • Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster
    • Lohe AR, Hilliker AJ, Roberts PA. 1993. Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster. Genetics 134:1149-1174. (Pubitemid 23220037)
    • (1993) Genetics , vol.134 , Issue.4 , pp. 1149-1174
    • Lohe, A.R.1    Hilliker, A.J.2    Roberts, P.A.3
  • 15
    • 0003147874 scopus 로고
    • Evolution of satellite DNA sequences in Drosophila
    • Verma RS, editor. Cambridge: Cambridge University Press.
    • Lohe AR, Roberts PA. 1988. Evolution of satellite DNA sequences in Drosophila. In: Verma RS, editor. Heterochromatin: Molecular and structural aspects. Cambridge: Cambridge University Press. p. 148-186.
    • (1988) Heterochromatin: Molecular and Structural Aspects , pp. 148-186
    • Lohe, A.R.1    Roberts, P.A.2
  • 16
    • 0029761501 scopus 로고    scopus 로고
    • Autosomal location of a new subtype of 1.688 satellite DNA of Drosophila melanogaster
    • Losada A, Villasante A. 1996. Autosomal location of a new subtype of 1.688 satellite DNA of Drosophila melanogaster. Chromosome Res. 4:372-483.
    • (1996) Chromosome Res. , vol.4 , pp. 372-483
    • Losada, A.1    Villasante, A.2
  • 17
    • 0030935938 scopus 로고    scopus 로고
    • Satellite DNA from the brine shrimp Artemia affects the expression of a flanking gene in yeast
    • DOI 10.1016/S0378-1119(96)00787-1, PII S0378111996007871
    • Maiorano D, Cece R, Badaracco G. 1997. Satellite DNA from the brine shrimp Artemia affects the expression of a flanking gene in yeast. Gene 189:13-18. (Pubitemid 27183166)
    • (1997) Gene , vol.189 , Issue.1 , pp. 13-18
    • Maiorano, D.1    Cece, R.2    Badaracco, G.3
  • 18
    • 0020470241 scopus 로고
    • Intrachromosomal gene conversion and the maintenance of sequence homogeneity among repeated genes
    • Nagylaki T, Petes TD. 1982. Intrachromosomal gene conversion and the maintenance of sequence homogeneity among repeated genes. Genetics 10:315-377.
    • (1982) Genetics , vol.10 , pp. 315-377
    • Nagylaki, T.1    Petes, T.D.2
  • 20
    • 38349081152 scopus 로고    scopus 로고
    • Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin
    • Plohl M, Luchetti A, Mestrović N, Mantovani B. 2008. Satellite DNAs between selfishness and functionality: Structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin. Gene 409:72-82.
    • (2008) Gene , vol.409 , pp. 72-82
    • Plohl, M.1    Luchetti, A.2    Mestrović, N.3    Mantovani, B.4
  • 21
    • 45849154165 scopus 로고    scopus 로고
    • J ModelTest: Phylogenetic model averaging
    • Posada D. 2008. jModelTest: Phylogenetic model averaging. Mol Biol Evol. 25:1253-1256.
    • (2008) Mol Biol Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 22
    • 0036855185 scopus 로고    scopus 로고
    • Abundant raw material for cis-regulatory evolution in humans
    • Rockman MV, Wray GA. 2002. Abundant raw material for cisregulatory evolution in humans. Mol Biol Evol. 19:1991-2004. (Pubitemid 35388122)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.11 , pp. 1991-2004
    • Rockman, M.V.1    Wray, G.A.2
  • 23
    • 30044449656 scopus 로고    scopus 로고
    • The evolutionary dynamics of alpha-satellite
    • Rudd MK, Wray GA, Willard HF. 2006. The evolutionary dynamics of alpha-satellite. Genome Res. 16:88-96.
    • (2006) Genome Res. , vol.16 , pp. 88-96
    • Rudd, M.K.1    Wray, G.A.2    Willard, H.F.3
  • 25
    • 0017294484 scopus 로고
    • Evolution of repeated DNA sequences by unequal crossover
    • Smith GP. 1976. Evolution of repeated DNA sequences by unequal crossover. Science 191:528-535.
    • (1976) Science , vol.191 , pp. 528-535
    • Smith, G.P.1
  • 26
    • 0000439225 scopus 로고
    • Transition stages of molecular drive in multiple-copy DNA families in Drosophila
    • Strachan T, Webb D, Dover G. 1985. Transition stages of molecular drive in multiple-copy DNA families in Drosophila. EMBO J. 4:1701-1708.
    • (1985) EMBO J. , vol.4 , pp. 1701-1708
    • Strachan, T.1    Webb, D.2    Dover, G.3
  • 27
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 28
    • 41649088383 scopus 로고    scopus 로고
    • Regulation of mammalian gene expression by retroelements and non-coding tandem repeats
    • DOI 10.1002/bies.20741
    • Tomilin NV. 2008. Regulation of mammalian gene expression by retroelements and non-coding tandem repeats. BioEssays 30: 338-348. (Pubitemid 351482331)
    • (2008) BioEssays , vol.30 , Issue.4 , pp. 338-348
    • Tomilin, N.V.1
  • 29
    • 34250736965 scopus 로고    scopus 로고
    • Transcription of the 1.688 satellite DNA family is under the control of RNA interference machinery in Drosophila melanogaster ovaries
    • DOI 10.1534/genetics.107.071720
    • Usakin L, Abad J, Vagin VV, de Pablos B, Villasante A, Gvozdev VA. 2007. Transcription of the 1.688 satellite DNA family is under the control of RNA interference machinery in Drosophila melanogaster ovaries. Genetics 176:1343-1349. (Pubitemid 46961126)
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1343-1349
    • Usakin, L.1    Abad, J.2    Vagin, V.V.3    De Pablos, B.4    Villasante, A.5    Gvozdev, V.A.6
  • 30
    • 66349113764 scopus 로고    scopus 로고
    • Unstable tandem repeats in promoters confer transcriptional evolvability
    • Vinces MD, Legendre M, Caldara M, Hagihara M, Verstrepen KJ. 2009. Unstable tandem repeats in promoters confer transcriptional evolvability. Science 324:1213-1216.
    • (2009) Science , vol.324 , pp. 1213-1216
    • Vinces, M.D.1    Legendre, M.2    Caldara, M.3    Hagihara, M.4    Verstrepen, K.J.5


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