Transcription of the 1.688 satellite DNA family is under the control of RNA interference machinery in Drosophila melanogaster ovaries

Genetics

Volumn 176, Issue 2, 2007, Pages 1343-1349

  Usakin, Lev ^a,b   Abad, José ^c   Vagin, Vasily V ^a,d   De Pablos, Beatriz ^c   Villasante, Alfredo ^c   Gvozdev, Vladimir A ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

^c UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^d UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE ALPHA; SATELLITE DNA;

ANIMAL EXPERIMENT; ARTICLE; CENTROMERE; CHROMATIN; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; GENE MUTATION; GENETIC TRANSCRIPTION; GERMINAL VESICLE; MULTIGENE FAMILY; NONHUMAN; OOCYTE; OVARY; PRIORITY JOURNAL; RNA INTERFERENCE; RNA TRANSCRIPTION; X CHROMOSOME LINKAGE;

ANIMALS; CHROMATIN; CLONING, MOLECULAR; DNA PRIMERS; DNA, SATELLITE; DROSOPHILA MELANOGASTER; FEMALE; MUTATION; OOCYTES; OVARY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA INTERFERENCE; TRANSCRIPTION, GENETIC;

DROSOPHILA MELANOGASTER;

EID: 34250736965     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.071720     Document Type: Article

References (36)

1. ABAD, J. P., M. CARMENA, S. BAARS, R. D. SAUNDERS, D. M. GLOVER et al., 1992 Dodeca satellite: a conserved G+C-rich satellite from the centromeric heterochromatin of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 89: 4663-4667.
2. ABAD, J. P., M. AGUDO, I. MOLINA, A. LOSADA, P. RIPOLL et al., 2000 Pericentromeric regions containing 1.688 satellite DNA sequences show anti-kinetochore antibody staining in prometaphase chromosomes of Drosophila melanogaster. Mol. Gen. Genet. 264: 371-377.
3. AGUDO, M., A. LOSADA, J. P. ABAD, S. PIMPINELLI, P. RIPOLL et al., 1999 Centromeres from telomeres? The centromeric region of the Y chromosome of Drosophila melanogaster contains a tandem array of telomeric HeT-A- and TART-related sequences. Nucleic Acids Res. 27: 3318-3324.
4. ARAVIN, A. A., N.M. NAUMOVA, A. V. TULIN, V. V. VAGIN, Y. M. ROZOVSKY et al., 2001 Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr. Biol. 11: 1017-1027.
5. ARAVIN, A. A., M. LAGOS-QUINTANA, A. YALCIN, M. ZAVOLAN, D. MARKS et al., 2003 The small RNA profile during Drosophila melanogaster development. Dev. Cell 5: 337-350.
6. BIRCHLER, J. A., H. H. KAVI and H. R. FERNANDEZ, 2004 Heterochromatin: RNA points the way. Curr. Biol. 14: R759-R761.
7. BUHLER, M., A. VERDEL and D. MOAZED, 2006 Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin- dependent gene silencing. Cell 125: 873-886.
8. CHANAS, G., S. LAVROV, F. IRAL, G. CAVALLI and F. MASCHAT, 2004 Engrailed and polyhomeotic maintain posterior cell identity through cubitus-interruptus regulation. Dev. Biol. 272: 522-535.
9. DIBARTOLOMEIS, S. M., K. D. TARTOF and F. R. JACKSON, 1992 A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin. Nucleic Acids Res. 20: 1113-1116.
10. DITCHFIELD, C., V. L. JOHNSON, A. TIGHE, R. ELLSTON, C. HAWORTH et al., 2003 Aurora B couples chromosome alignment with anaphase by targeting BubR1, Mad2, and Cenp-E to kinetochores. J. Cell Biol. 161: 267-280.
11. GATTI, M., S. BONACCORSI and S. PIMPINELLI, 1994 Looking at Drosophila mitotic chromosomes. Methods Cell Biol. 44: 371-391.
12. GILLESPIE, D. E., and C. A. BERG, 1995 Homeless is required for RNA localization in Drosophila oogenesis and encodes a new member of the DE-H family of RNA-dependent ATPases. Genes Dev. 9: 2495-2508.
13. HSIEH, T., and D. BRUTLAG, 1979 Sequence and sequence variation within the 1.688 g/cm3 satellite DNA of Drosophila melanogaster. J. Mol. Biol. 135: 465-481.
14. JENUWEIN, T., and C. D. ALLIS, 2001 Translating the histone code. Science 293: 1074-1080.
15. KAVI, H. H., H. R. FERNANDEZ, W. XIE and J. A. BIRCHLER, 2005 RNA silencing in Drosophila. FEBS Lett. 579: 5940-5949.
16. KENNERDELL, J. R., S. YAMAGUCHI and R. W. CARTHEW, 2002 RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E. Genes Dev. 16: 1884-1889.
17. LACHNER, M., D. O'CARROLL, S. REA, K. MECHTLER and T. JENUWEIN, 2001 Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410: 116-120.
18. LAMB, J. C., and J. A. BIRCHLER, 2003 The role of DNA sequence in centromere formation. Genome Biol. 4: 214.
19. LEE, H. R., P. NEUMANN, J. MACAS and J. JIANG, 2006 Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice. Mol. Biol. Evol. 23: 2505-2520.
20. LIPPMAN, Z., A. V. GENDREL, M. BLACK, M. W. VAUGHN, N. DEDHIA et al., 2004 Role of transposable elements in heterochromatin and epigenetic control. Nature 430: 471-476.
21. LOHE, A. R., A. J. HILLIKER and P. A. ROBERTS, 1993 Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster. Genetics 134: 1149-1174.
22. LOSADA, A., and A. VILLASANTE, 1996 Autosomal location of a new subtype of 1.688 satellite DNA of Drosophila melanogaster. Chromosome Res. 4: 372-383.
23. MARTENS, J. H., R. J. O'SULLIVAN, U. BRAUNSCHWEIG, S. OPRAVIL, M. RADOLF et al., 2005 The profile of repeat-associated histone lysine methylation states in themouse epigenome. EMBO J. 24: 800-812.
24. MAY, B. P., Z. B. LIPPMAN, Y. FANG, D. L. SPECTOR and R. A. MARTIENSSEN, 2005 Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats. PLoS Genet. 1: e79.
25. NAKAYAMA, J., J. C. RICE, B. D. STRAHL, C. D. ALLIS and S. I. GREWAL, 2001 Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly. Science 292: 110-113.
26. PAL-BHADRA, M., B. A. LEIBOVITCH, S. G. GANDHI, M. RAO, U. BHADRA et al., 2004 Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science 303: 669-672.
27. PARTRIDGE, J. F., K. S. SCOTT, A. J. BANNISTER, T. KOUZARIDES and R. C. ALLSHIRE, 2002 cis-acting DNA from fission yeast centromeres mediates histone H3 methylation and recruitment of silencing factors and cohesin to an ectopic site. Curr. Biol. 12: 1652-1660.
28. SAVITSKY, M., D. KWON, P. GEORGIEV, A. KALMYKOVA and V. GVOZDEV, 2006 Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline. Genes Dev. 20: 345-354.
29. SUGIYAMA, T., H. P. CAM, R. SUGIYAMA, K. NOMA, M. ZOFALL et al., 2007 SHREC, an effector complex for heterochromatic transcriptional silencing. Cell 128: 491-504.
30. SUN, X., J. WAHLSTROM and G. KARPEN, 1997 Molecular structure of a functional Drosophila centromere. Cell 91: 1007-1019.
31. TURNER, B. M., 2000 Histone acetylation and an epigenetic code. BioEssays 22: 836-845.
32. VAGIN, V. V., A. SIGOVA, C. LI, H. SEITZ, V. GVOZDEV et al., 2006 A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324.
33. VERDEL, A., S. JIA, S. GERBER, T. SUGIYAMA, S. GYGI et al., 2004 RNAi-mediated targeting of heterochromatin by the RITS complex. Science 303: 672-676.
34. VOLPE, T. A., C. KIDNER, I. M. HALL, G. TENG, S. I. GREWAL et al., 2002 Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833-1837.
35. WARING, G. L., and J. C. POLLACK, 1987 Cloning and characterization of a dispersed, multicopy, X chromosome sequence in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 84: 2843-2847.
36. WASSARMAN, D. A., N. AOYAGI, L. A. PILE and E. M. SCHLAG, 2000 TAF250 is required for multiple developmental events in Drosophila. Proc. Natl. Acad. Sci. USA 97: 1154-1159.