메뉴 건너뛰기




Volumn 7, Issue 4, 2012, Pages

Methylcap-seq reveals novel DNA methylation markers for the diagnosis and recurrence prediction of bladder cancer in a chinese population

Author keywords

[No Author keywords available]

Indexed keywords

TUMOR MARKER;

EID: 84859829499     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0035175     Document Type: Article
Times cited : (61)

References (46)
  • 2
    • 47249118777 scopus 로고    scopus 로고
    • Cancer incidence trends in urban Shanghai, China (1972-1999)
    • Liu E, Xiang Y, Jin F, Zhou S, Sun L, et al. (2004) Cancer incidence trends in urban Shanghai, China (1972-1999). Tumor 24 (1): 11-13.
    • (2004) Tumor , vol.24 , Issue.1 , pp. 11-13
    • Liu, E.1    Xiang, Y.2    Jin, F.3    Zhou, S.4    Sun, L.5
  • 4
    • 59249093638 scopus 로고    scopus 로고
    • Molecular pathogenesis and diagnostics of bladder cancer
    • Mitra A, Cote R, (2009) Molecular pathogenesis and diagnostics of bladder cancer. Annu Rev Pathol 4: 251-285.
    • (2009) Annu Rev Pathol , vol.4 , pp. 251-285
    • Mitra, A.1    Cote, R.2
  • 5
    • 0002881192 scopus 로고    scopus 로고
    • In Principles and Practice of Genitourinary Oncology
    • Lippincott Williams & Wilkins
    • Herr H, Lamm D, Denis L, (1997) In Principles and Practice of Genitourinary Oncology. Lippincott Williams & Wilkins pp. 273-280.
    • (1997) , pp. 273-280
    • Herr, H.1    Lamm, D.2    Denis, L.3
  • 6
    • 0346100499 scopus 로고    scopus 로고
    • The health economics of bladder cancer: a comprehensive review of the published literature
    • Botteman M, Pashos C, Redaelli A, Laskin B, Hauser R, (2003) The health economics of bladder cancer: a comprehensive review of the published literature. Pharmacoeconomics 21: 1315-1330.
    • (2003) Pharmacoeconomics , vol.21 , pp. 1315-1330
    • Botteman, M.1    Pashos, C.2    Redaelli, A.3    Laskin, B.4    Hauser, R.5
  • 7
    • 34249299791 scopus 로고    scopus 로고
    • The complex language of chromatin regulation during transcription
    • Berger S, (2007) The complex language of chromatin regulation during transcription. Nature 447: 407-412.
    • (2007) Nature , vol.447 , pp. 407-412
    • Berger, S.1
  • 8
    • 34249279527 scopus 로고    scopus 로고
    • Stability and flexibility of epigenetic gene regulation in mammalian development
    • Reik W, (2007) Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 447: 425-432.
    • (2007) Nature , vol.447 , pp. 425-432
    • Reik, W.1
  • 9
    • 34249275353 scopus 로고    scopus 로고
    • Phenotypic plasticity and the epigenetics of human disease
    • Feinberg A, (2007) Phenotypic plasticity and the epigenetics of human disease. Nature 447: 433-440.
    • (2007) Nature , vol.447 , pp. 433-440
    • Feinberg, A.1
  • 10
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • Bird A, (1986) CpG-rich islands and the function of DNA methylation. Nature 321: 209-213.
    • (1986) Nature , vol.321 , pp. 209-213
    • Bird, A.1
  • 12
    • 0242584454 scopus 로고    scopus 로고
    • Chromosomal instability and tumors promoted by DNA hypomethylation
    • Eden A, Gaudet F, Waghmare A, Jaenisch R, (2003) Chromosomal instability and tumors promoted by DNA hypomethylation. Science 300: 455.
    • (2003) Science , vol.300 , pp. 455
    • Eden, A.1    Gaudet, F.2    Waghmare, A.3    Jaenisch, R.4
  • 13
    • 18844404733 scopus 로고    scopus 로고
    • DNA CpG hypomethylation induces heterochromatin reorganization involving the histone variant macroH2A
    • Ma Y, Jacobs S, Jackson-Grusby L, Mastrangelo M, Torres-Betancourt J, et al. (2005) DNA CpG hypomethylation induces heterochromatin reorganization involving the histone variant macroH2A. J Cell Sci 118: 1607-1616.
    • (2005) J Cell Sci , vol.118 , pp. 1607-1616
    • Ma, Y.1    Jacobs, S.2    Jackson-Grusby, L.3    Mastrangelo, M.4    Torres-Betancourt, J.5
  • 14
    • 31344466008 scopus 로고    scopus 로고
    • DNA methylation and gene silencing in cancer
    • Baylin S, (2005) DNA methylation and gene silencing in cancer. Nat Clin Pract Oncol 2 (Suppl 1): S4-11.
    • (2005) Nat Clin Pract Oncol , vol.2 , Issue.SUPPL. 1 , pp. 4-11
    • Baylin, S.1
  • 15
    • 33644846509 scopus 로고    scopus 로고
    • Epigenetic gene silencing in cancer - a mechanism for early oncogenic pathway addiction?
    • Baylin S, Ohm J, (2006) Epigenetic gene silencing in cancer - a mechanism for early oncogenic pathway addiction? Nat Rev Cancer 6: 107-116.
    • (2006) Nat Rev Cancer , vol.6 , pp. 107-116
    • Baylin, S.1    Ohm, J.2
  • 16
    • 79960949694 scopus 로고    scopus 로고
    • Genetic and epigenetic biomarkers for early detection, therapeutic effectiveness and relapse monitoring in bladder cancer
    • Dumache R, David D, Kaycsa A, Minciu R, Negru S, et al. (2011) Genetic and epigenetic biomarkers for early detection, therapeutic effectiveness and relapse monitoring in bladder cancer. Rev Med Chir Soc Med Nat Iasi 115: 163-167.
    • (2011) Rev Med Chir Soc Med Nat Iasi , vol.115 , pp. 163-167
    • Dumache, R.1    David, D.2    Kaycsa, A.3    Minciu, R.4    Negru, S.5
  • 17
    • 37549047612 scopus 로고    scopus 로고
    • A novel set of DNA methylation markers in urine sediments for sensitive/specific detection of bladder cancer
    • Yu J, Zhu T, Wang Z, Zhang H, Qian Z, et al. (2007) A novel set of DNA methylation markers in urine sediments for sensitive/specific detection of bladder cancer. Clin Cancer Res 13: 7296-7304.
    • (2007) Clin Cancer Res , vol.13 , pp. 7296-7304
    • Yu, J.1    Zhu, T.2    Wang, Z.3    Zhang, H.4    Qian, Z.5
  • 18
    • 78149277443 scopus 로고    scopus 로고
    • DNA methylation profiles delineate etiologic heterogeneity and clinically important subgroups of bladder cancer
    • Wilhelm-Benartzi C, Koestler D, Houseman E, Christensen B, Wiencke J, et al. (2010) DNA methylation profiles delineate etiologic heterogeneity and clinically important subgroups of bladder cancer. Carcinogenesis 31: 1972-1976.
    • (2010) Carcinogenesis , vol.31 , pp. 1972-1976
    • Wilhelm-Benartzi, C.1    Koestler, D.2    Houseman, E.3    Christensen, B.4    Wiencke, J.5
  • 19
    • 80052470636 scopus 로고    scopus 로고
    • Comprehensive genome methylation analysis in bladder cancer; identification and validation of novel methylated genes and application of these as urinary tumor markers
    • Epub ahead of print
    • Reinert T, Mansilla Castano F, Lamy P, Wojdacz T, et al. (2011) Comprehensive genome methylation analysis in bladder cancer; identification and validation of novel methylated genes and application of these as urinary tumor markers. Clin Cancer Res Epub ahead of print.
    • (2011) Clin Cancer Res
    • Reinert, T.1    Mansilla, C.F.2    Lamy, P.3    Wojdacz, T.4
  • 20
    • 77957951913 scopus 로고    scopus 로고
    • Whole-genome DNA methylation profiling using MethylCap-seq
    • Brinkman A, Simmer F, Ma K, Kaan A, Zhu J, et al. (2010) Whole-genome DNA methylation profiling using MethylCap-seq. Methods 52: 232-236.
    • (2010) Methods , vol.52 , pp. 232-236
    • Brinkman, A.1    Simmer, F.2    Ma, K.3    Kaan, A.4    Zhu, J.5
  • 21
    • 33644635113 scopus 로고    scopus 로고
    • Early bladder cancer: concept, diagnosis, and management
    • Kitamura H, Tsukamoto T, (2006) Early bladder cancer: concept, diagnosis, and management. Int J Clin Oncol 11: 28-37.
    • (2006) Int J Clin Oncol , vol.11 , pp. 28-37
    • Kitamura, H.1    Tsukamoto, T.2
  • 22
    • 1542322897 scopus 로고    scopus 로고
    • Methylation profiling of twenty four genes and the concordant methylation behaviours of nineteen genes that may contribute to hepatocellular carcinogenesis
    • Yu J, Zhang H, Ma Z, Lu W, Wang Y, et al. (2003) Methylation profiling of twenty four genes and the concordant methylation behaviours of nineteen genes that may contribute to hepatocellular carcinogenesis. Cell Res 13: 319-333.
    • (2003) Cell Res , vol.13 , pp. 319-333
    • Yu, J.1    Zhang, H.2    Ma, Z.3    Lu, W.4    Wang, Y.5
  • 23
    • 77955433253 scopus 로고    scopus 로고
    • Whole genome DNA methylation analysis based on high throughput sequencing technology
    • Li N, Ye M, Li Y, Yan Z, Butcher L, et al. (2010) Whole genome DNA methylation analysis based on high throughput sequencing technology. Methods 52: 203-212.
    • (2010) Methods , vol.52 , pp. 203-212
    • Li, N.1    Ye, M.2    Li, Y.3    Yan, Z.4    Butcher, L.5
  • 24
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 26
    • 79960101746 scopus 로고    scopus 로고
    • Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments
    • Chung W, Bondaruk J, Jelinek J, Lotan Y, Liang S, et al. (2011) Detection of bladder cancer using novel DNA methylation biomarkers in urine sediments. Cancer Epidemiol Biomarkers Prev 20: 1483-1491.
    • (2011) Cancer Epidemiol Biomarkers Prev , vol.20 , pp. 1483-1491
    • Chung, W.1    Bondaruk, J.2    Jelinek, J.3    Lotan, Y.4    Liang, S.5
  • 27
    • 49749113191 scopus 로고    scopus 로고
    • Epigenetics in bladder cancer
    • Enokida H, Nakagawa M, (2008) Epigenetics in bladder cancer. Int J Clin Oncol 13: 298-307.
    • (2008) Int J Clin Oncol , vol.13 , pp. 298-307
    • Enokida, H.1    Nakagawa, M.2
  • 28
    • 79952384705 scopus 로고    scopus 로고
    • Cancer epigenetics reaches mainstream oncology
    • Rodriguez-Paredes M, Esteller M, (2011) Cancer epigenetics reaches mainstream oncology. Nat Med 17: 330-339.
    • (2011) Nat Med , vol.17 , pp. 330-339
    • Rodriguez-Paredes, M.1    Esteller, M.2
  • 29
    • 74949089956 scopus 로고    scopus 로고
    • Three DNA methylation epigenotypes in human colorectal cancer
    • Yagi K, Akagi K, Hayashi H, Nagae G, Tsuji S, et al. (2010) Three DNA methylation epigenotypes in human colorectal cancer. Clin Cancer Res 16: 21-33.
    • (2010) Clin Cancer Res , vol.16 , pp. 21-33
    • Yagi, K.1    Akagi, K.2    Hayashi, H.3    Nagae, G.4    Tsuji, S.5
  • 30
    • 38549123030 scopus 로고    scopus 로고
    • Identification of DNA hypermethylation of SOX9 in association with bladder cancer progression using CpG microarrays
    • Aleman A, Adrien L, Lopez-Serra L, Cordon-Cardo C, Esteller M, et al. (2008) Identification of DNA hypermethylation of SOX9 in association with bladder cancer progression using CpG microarrays. Br J Cancer 98: 466-473.
    • (2008) Br J Cancer , vol.98 , pp. 466-473
    • Aleman, A.1    Adrien, L.2    Lopez-Serra, L.3    Cordon-Cardo, C.4    Esteller, M.5
  • 31
    • 78650354147 scopus 로고    scopus 로고
    • Three epigenetic biomarkers, GDF15, TMEFF2, and VIM, accurately predict bladder cancer from DNA-based analyses of urine samples
    • Costa V, Henrique R, Danielsen S, Duarte-Pereira S, Eknaes M, et al. (2010) Three epigenetic biomarkers, GDF15, TMEFF2, and VIM, accurately predict bladder cancer from DNA-based analyses of urine samples. Clin Cancer Res 16: 5842-5851.
    • (2010) Clin Cancer Res , vol.16 , pp. 5842-5851
    • Costa, V.1    Henrique, R.2    Danielsen, S.3    Duarte-Pereira, S.4    Eknaes, M.5
  • 32
    • 78049282338 scopus 로고    scopus 로고
    • Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue
    • Wolff EM, Chihara Y, Pan F, Weisenberger DJ, Siegmund KD, et al. (2010) Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue. Cancer Res 70: 8169-8178.
    • (2010) Cancer Res , vol.70 , pp. 8169-8178
    • Wolff, E.M.1    Chihara, Y.2    Pan, F.3    Weisenberger, D.J.4    Siegmund, K.D.5
  • 33
    • 33646247418 scopus 로고    scopus 로고
    • Combination analysis of hypermethylated Wnt-antagonist family genes as a novel epigenetic biomarker panel for bladder cancer detection
    • Urakami S, Shiina H, Enokida H, Kawakami T, Kawamoto K, et al. (2006) Combination analysis of hypermethylated Wnt-antagonist family genes as a novel epigenetic biomarker panel for bladder cancer detection. Clin Cancer Res 12: 2109-2116.
    • (2006) Clin Cancer Res , vol.12 , pp. 2109-2116
    • Urakami, S.1    Shiina, H.2    Enokida, H.3    Kawakami, T.4    Kawamoto, K.5
  • 34
    • 9344235475 scopus 로고    scopus 로고
    • Detection of methylated apoptosis-associated genes in urine sediments of bladder cancer patients
    • Friedrich M, Weisenberger D, Cheng J, Chandrasoma S, Siegmund K, et al. (2004) Detection of methylated apoptosis-associated genes in urine sediments of bladder cancer patients. Clin Cancer Res 10: 7457-7465.
    • (2004) Clin Cancer Res , vol.10 , pp. 7457-7465
    • Friedrich, M.1    Weisenberger, D.2    Cheng, J.3    Chandrasoma, S.4    Siegmund, K.5
  • 35
    • 0346059548 scopus 로고    scopus 로고
    • Promoter hypermethylation of tumor suppressor genes in urine from kidney cancer patients
    • Battagli C, Uzzo R, Dulaimi E, Ibanez de Caceres I, Krassenstein R, et al. (2003) Promoter hypermethylation of tumor suppressor genes in urine from kidney cancer patients. Cancer Res 63: 8695-8699.
    • (2003) Cancer Res , vol.63 , pp. 8695-8699
    • Battagli, C.1    Uzzo, R.2    Dulaimi, E.3    Ibanez de Caceres, I.4    Krassenstein, R.5
  • 36
    • 0036184754 scopus 로고    scopus 로고
    • Hypermethylation of multiple genes in tumor tissues and voided urine in urinary bladder cancer patients
    • Chan M, Chan L, Tang N, Tong J, Lo K, et al. (2002) Hypermethylation of multiple genes in tumor tissues and voided urine in urinary bladder cancer patients. Clin Cancer Res 8: 464-470.
    • (2002) Clin Cancer Res , vol.8 , pp. 464-470
    • Chan, M.1    Chan, L.2    Tang, N.3    Tong, J.4    Lo, K.5
  • 37
    • 0034351878 scopus 로고    scopus 로고
    • MDR1 gene overexpression and altered degree of methylation at the promoter region in bladder cancer during chemotherapeutic treatment
    • Tada Y, Wada M, Kuroiwa K, Kinugawa N, Harada T, et al. (2000) MDR1 gene overexpression and altered degree of methylation at the promoter region in bladder cancer during chemotherapeutic treatment. Clin Cancer Res 6: 4618-4627.
    • (2000) Clin Cancer Res , vol.6 , pp. 4618-4627
    • Tada, Y.1    Wada, M.2    Kuroiwa, K.3    Kinugawa, N.4    Harada, T.5
  • 38
    • 51249105294 scopus 로고    scopus 로고
    • DNA methylation patterns in bladder cancer and washing cell sediments: a perspective for tumor recurrence detection
    • Negraes P, Favaro F, Camargo J, Oliveira M, Goldberg J, et al. (2008) DNA methylation patterns in bladder cancer and washing cell sediments: a perspective for tumor recurrence detection. BMC Cancer 8: 238.
    • (2008) BMC Cancer , vol.8 , pp. 238
    • Negraes, P.1    Favaro, F.2    Camargo, J.3    Oliveira, M.4    Goldberg, J.5
  • 39
    • 34250891865 scopus 로고    scopus 로고
    • Epigenetic silencing of the candidate tumor suppressor gene PROX1 in sporadic breast cancer
    • Versmold B, Felsberg J, Mikeska T, Ehrentraut D, Kohler J, et al. (2007) Epigenetic silencing of the candidate tumor suppressor gene PROX1 in sporadic breast cancer. Int J Cancer 121 (3): 547-54.
    • (2007) Int J Cancer , vol.121 , Issue.3 , pp. 547-554
    • Versmold, B.1    Felsberg, J.2    Mikeska, T.3    Ehrentraut, D.4    Kohler, J.5
  • 40
    • 79952077268 scopus 로고    scopus 로고
    • Hypermethylation-mediated reduction of LMX1A expression in gastric cancer
    • Dong W, Feng L, Xie Y, Zhang H, Wu Y, (2011) Hypermethylation-mediated reduction of LMX1A expression in gastric cancer. Cancer Sci 102 (2): 361-6.
    • (2011) Cancer Sci , vol.102 , Issue.2 , pp. 361-366
    • Dong, W.1    Feng, L.2    Xie, Y.3    Zhang, H.4    Wu, Y.5
  • 41
    • 80054032532 scopus 로고    scopus 로고
    • TAL1/SCL is downregulated upon histone deacetylase inhibition in T-cell acute lymphoblastic leukemia cells
    • Cardoso B, de Almeida S, Laranjeira A, Carmo-Fonseca M, Yunes J, et al. (2011) TAL1/SCL is downregulated upon histone deacetylase inhibition in T-cell acute lymphoblastic leukemia cells. Leukemia 25 (10): 1578-86.
    • (2011) Leukemia , vol.25 , Issue.10 , pp. 1578-1586
    • Cardoso, B.1    de Almeida, S.2    Laranjeira, A.3    Carmo-Fonseca, M.4    Yunes, J.5
  • 42
    • 34848873175 scopus 로고    scopus 로고
    • DNA methylation profile of 28 potential marker loci in malignant mesothelioma
    • Tsou J, Galler J, Wali A, Ye W, Siegmund K, et al. (2007) DNA methylation profile of 28 potential marker loci in malignant mesothelioma. Lung Cancer 58: 220-230.
    • (2007) Lung Cancer , vol.58 , pp. 220-230
    • Tsou, J.1    Galler, J.2    Wali, A.3    Ye, W.4    Siegmund, K.5
  • 43
    • 79951541348 scopus 로고    scopus 로고
    • Lack of the ventral anterior homeodomain transcription factor VAX1 leads to induction of a second pituitary Development
    • Bharti K, Gasper M, Bertuzzi S, Arnheiter H, (2011) Lack of the ventral anterior homeodomain transcription factor VAX1 leads to induction of a second pituitary Development. 138 (5): 873-8.
    • (2011) , vol.138 , Issue.5 , pp. 873-878
    • Bharti, K.1    Gasper, M.2    Bertuzzi, S.3    Arnheiter, H.4
  • 44
    • 0346158516 scopus 로고    scopus 로고
    • Structural characterization and promoter analysis of human potassium channel Kv8.1 (KCNV1) Gene
    • Ebihara M, Ohba H, Kikuchi M, Yoshikawa T, (2004) Structural characterization and promoter analysis of human potassium channel Kv8.1 (KCNV1) Gene 325: 89-96.
    • (2004) , vol.325 , pp. 89-96
    • Ebihara, M.1    Ohba, H.2    Kikuchi, M.3    Yoshikawa, T.4
  • 45
    • 3042701030 scopus 로고    scopus 로고
    • Endothelin-converting enzyme-like 1 (ECEL1) is present both in the plasma membrane and in the endoplasmic reticulum
    • Benoit A, Vargas M, Desgroseillers L, Boileau G, (2004) Endothelin-converting enzyme-like 1 (ECEL1) is present both in the plasma membrane and in the endoplasmic reticulum. Biochem J 380(Pt 3): 881-8.
    • (2004) Biochem J , vol.380 Pt. 3 , pp. 881-888
    • Benoit, A.1    Vargas, M.2    Desgroseillers, L.3    Boileau, G.4
  • 46
    • 80053295911 scopus 로고    scopus 로고
    • Tmem26 is dynamically expressed during palate and limb development but is not required for embryonic survival
    • Town L, McGlinn E, Davidson T, Browne C, Chawengsaksophak K, et al. (2011) Tmem26 is dynamically expressed during palate and limb development but is not required for embryonic survival. PLoS One. 2011; 6 (9): e25228.
    • (2011) PLoS One 2011 , vol.6 , Issue.9
    • Town, L.1    McGlinn, E.2    Davidson, T.3    Browne, C.4    Chawengsaksophak, K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.