Low dependency of retrotransposition on the ORF1 protein of the zebrafish LINE, ZfL2-1

Gene

Volumn 499, Issue 1, 2012, Pages 41-47

  Kajikawa, Masaki ^a   Sugano, Tomohiro ^a   Sakurai, Ryosuke ^a   Okada, Norihiro ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

Non LTR retrotransposon; Transposable element

Indexed keywords

ENDONUCLEASE; MEMBRANE PROTEIN; PLASMID DNA; PROTEIN ORF 1; PROTEIN ORF 2; PROTEIN ZFL2 1; RNA DIRECTED DNA POLYMERASE; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; ARTICLE; CLADISTICS; CODON; CONTROLLED STUDY; FEMALE; FRAMESHIFT MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; HELA CELL; HUMAN; HUMAN CELL; MUTATIONAL ANALYSIS; NONHUMAN; OPEN READING FRAME; POLYMERIZATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN MOTIF; RETROPOSON; SEQUENCE ANALYSIS; ZEBRA FISH;

3' UNTRANSLATED REGIONS; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; HELA CELLS; HUMANS; LONG INTERSPERSED NUCLEOTIDE ELEMENTS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; OPEN READING FRAMES; RECOMBINATION, GENETIC; RETROELEMENTS; ZEBRAFISH; ZEBRAFISH PROTEINS;

DANIO RERIO;

EID: 84859749445     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.02.048     Document Type: Article

References (34)

1. Alisch R.S., Garcia-Perez J.L., Muotri A.R., Gage F.H., Moran J.V. Unconventional translation of mammalian LINE-1 retrotransposons. Genes Dev. 2006, 20:210-224.
2. Cost G.J., Feng Q., Jacquier A., Boeke J.D. Human L1 element target-primed reverse transcription in vitro. EMBO J. 2002, 21:5899-5910.
3. Dawson A., Hartswood E., Paterson T., Finnegan D.J. A LINE-like transposable element in Drosophila, the I factor, encodes a protein with properties similar to those of retroviral nucleocapsids. EMBO J. 1997, 16:4448-4455.
4. Doucet A.J., et al. Characterization of LINE-1 ribonucleoprotein particles. PLoS Genet. 2010, 6:e1001150.
5. Feng Q., Moran J.V., Kazazian H.H., Boeke J.D. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 1996, 87:905-916.
6. Firth A.E., Wills N.M., Gesteland R.F., Atkins J.F. Stimulation of stop codon readthrough: frequent presence of an extended 3' RNA structural element. Nucleic Acids Res. 2011, 39:6679-6691.
7. Gasior S.L., Wakeman T.P., Xu B., Deininger P.L. The human LINE-1 retrotransposon creates DNA double-strand breaks. J. Mol. Biol. 2006, 357:1383-1393.
8. Goodier J.L., Kazazian H.H. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 2008, 135:23-35.
9. Hohjoh H., Singer M.F. Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. EMBO J. 1996, 15:630-639.
10. Januszyk K., et al. Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1. J. Biol. Chem. 2007, 282:24893-24904.
11. Kajikawa M., Ichiyanagi K., Tanaka N., Okada N. Isolation and characterization of active LINE and SINEs from the eel. Mol. Biol. Evol. 2005, 22:673-682.
12. Kapitonov V.V., Jurka J. The esterase and PHD domains in CR1-like non-LTR retrotransposons. Mol. Biol. Evol. 2003, 20:38-46.
13. Kapitonov V.V., Tempel S., Jurka J. Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences. Gene 2009, 448:207-213.
14. Kazazian H.H. Mobile elements: drivers of genome evolution. Science 2004, 303:1626-1632.
15. Khazina E., Weichenrieder O. Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:731-736.
16. Kojima K.K., Matsumoto T., Fujiwara H. Eukaryotic translational coupling in UAAUG stop-start codons for the bicistronic RNA translation of the non-long terminal repeat retrotransposon SART1. Mol. Cell. Biol. 2005, 25:7675-7686.
17. Kulpa D.A., Moran J.V. Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition. Hum. Mol. Genet. 2005, 14:3237-3248.
18. Li P.W., Li J., Timmerman S.L., Krushel L.A., Martin S.L. The dicistronic RNA from the mouse LINE-1 retrotransposon contains an internal ribosome entry site upstream of each ORF: implications for retrotransposition. Nucleic Acids Res. 2006, 34:853-864.
19. Luan D.D., Korman M.H., Jakubczak J.L., Eickbush T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 1993, 72:595-605.
20. Malik H.S., Burke W.D., Eickbush T.H. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 1999, 16:793-805.
21. Martin S.L. Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells. Mol. Cell. Biol. 1991, 11:4804-4807.
22. Martin S.L. Nucleic acid chaperone properties of ORF1p from the non-LTR retrotransposon, LINE-1. RNA Biol. 2010, 7:706-711.
23. Martin S.L., Bushman F.D. Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol. 2001, 21:467-475.
24. Martin S.L., Li J., Weisz J.A. Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1. J. Mol. Biol. 2000, 304:11-20.
25. Martin S.L., Branciforte D., Keller D., Bain D.L. Trimeric structure for an essential protein in L1 retrotransposition. Proc. Natl. Acad. Sci. U. S. A. 2003, 100:13815-13820.
26. Martin S.L., et al. LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein. J. Mol. Biol. 2005, 348:549-561.
27. Matsumoto T., Hamada M., Osanai M., Fujiwara H. Essential domains for ribonucleoprotein complex formation required for retrotransposition of telomere-specific non-long terminal repeat retrotransposon SART1. Mol. Cell. Biol. 2006, 26:5168-5179.
28. Moran J.V., Holmes S.E., Naas T.P., DeBerardinis R.J., Boeke J.D., Kazazian H.H. High frequency retrotransposition in cultured mammalian cells. Cell 1996, 87:917-927.
29. Nakamura M., Okada N., Kajikawa M. Self-interaction, nucleic acid binding, and nucleic acid chaperone activities are unexpectedly retained in the unique ORF1p of zebrafish LINE. Mol. Cell. Biol. 2012, 32:458-469.
30. Pestova T.V., et al. Molecular mechanisms of translation initiation in eukaryotes. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:7029-7036.
31. Seleme M.C., Busseau I., Malinsky S., Bucheton A., Teninges D. High-frequency retrotransposition of a marked I factor in Drosophila melanogaster correlates with a dynamic expression pattern of the ORF1 protein in the cytoplasm of oocytes. Genetics 1999, 151:761-771.
32. Sugano T., Kajikawa M., Okada N. Isolation and characterization of retrotransposition-competent LINEs from zebrafish. Gene 2006, 365:74-82.
33. Suzuki J., et al. Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition. PLoS Genet. 2009, 5:e1000461.
34. Takahashi H., Fujiwara H. Transplantation of target site specificity by swapping the endonuclease domains of two LINEs. EMBO J. 2002, 21:408-417.