메뉴 건너뛰기




Volumn 32, Issue 2, 2012, Pages 458-469

Self-interaction, nucleic acid binding, and nucleic acid chaperone activities are unexpectedly retained in the unique ORF1p of zebrafish LINE

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; DOUBLE STRANDED DNA; RNA BINDING PROTEIN; SINGLE STRANDED DNA; UNCLASSIFIED DRUG; ZFL2 1 PROTEIN;

EID: 84856805287     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.06162-11     Document Type: Article
Times cited : (12)

References (33)
  • 1
    • 0036847319 scopus 로고    scopus 로고
    • Human L1 element target-primed reverse transcription in vitro
    • Cost GJ, Feng Q, Jacquier A, Boeke JD. 2002. Human L1 element target-primed reverse transcription in vitro. EMBO J. 21:5899-5910.
    • (2002) EMBO J , vol.21 , pp. 5899-5910
    • Cost, G.J.1    Feng, Q.2    Jacquier, A.3    Boeke, J.D.4
  • 2
    • 0030746164 scopus 로고    scopus 로고
    • A LINE-like transposable element in Drosophila, the I factor, encodes a protein with properties similar to those of retroviral nucleocapsids
    • Dawson A, Hartswood E, Paterson T, Finnegan DJ. 1997. A LINE-like transposable element in Drosophila, the I factor, encodes a protein with properties similar to those of retroviral nucleocapsids. EMBO J. 16:4448-4455.
    • (1997) EMBO J , vol.16 , pp. 4448-4455
    • Dawson, A.1    Hartswood, E.2    Paterson, T.3    Finnegan, D.J.4
  • 3
    • 78449236016 scopus 로고    scopus 로고
    • Characterization of LINE-1 ribonucleoprotein particles
    • Doucet AJ, et al. 2010. Characterization of LINE-1 ribonucleoprotein particles. PLoS Genet. 6:e1001150.
    • (2010) PLoS Genet , vol.6
    • Doucet, A.J.1
  • 4
    • 85158069207 scopus 로고    scopus 로고
    • Origins and evolution of retrotransposons
    • Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), Washington, DC
    • Eickbush TH, Malik HS. 2002. Origins and evolution of retrotransposons, p 1111-1144. In Craig NL, Craigie R, Gellert M, Lambowitz AM (ed), Mobile DNA II. American Society for Microbiology, Washington, DC.
    • (2002) Mobile DNA II. American Society for Microbiology , pp. 1111-1144
    • Eickbush, T.H.1    Malik, H.S.2
  • 5
    • 80052235999 scopus 로고    scopus 로고
    • Paired mutations abolish and restore the balanced annealing and melting activities of ORF1p that are required for LINE-1 retrotransposition
    • Evans JD, Peddigari S, Chaurasiya KR, Williams MC, Martin SL. 2011. Paired mutations abolish and restore the balanced annealing and melting activities of ORF1p that are required for LINE-1 retrotransposition. Nucleic Acids Res. 39:5611-5621.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5611-5621
    • Evans, J.D.1    Peddigari, S.2    Chaurasiya, K.R.3    Williams, M.C.4    Martin, S.L.5
  • 6
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng Q, Moran JV, Kazazian HH, Jr, Boeke JD. 1996. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87:905-916.
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian Jr., H.H.3    Boeke, J.D.4
  • 7
    • 52949095077 scopus 로고    scopus 로고
    • Retrotransposons revisited: the restraint and rehabilitation of parasites
    • Goodier JL, Kazazian HH, Jr. 2008. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 135:23-35.
    • (2008) Cell , vol.135 , pp. 23-35
    • Goodier, J.L.1    Kazazian Jr., H.H.2
  • 9
    • 0030774720 scopus 로고    scopus 로고
    • Prediction of protein secondary structure using the 3D-1D compatibility algorithm
    • Ito M, Matsuo Y, Nishikawa K. 1997. Prediction of protein secondary structure using the 3D-1D compatibility algorithm. Comput. Appl. Biosci. 13:415-424.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 415-424
    • Ito, M.1    Matsuo, Y.2    Nishikawa, K.3
  • 10
    • 34548305234 scopus 로고    scopus 로고
    • Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1
    • Januszyk K, et al. 2007. Identification and solution structure of a highly conserved C-terminal domain within ORF1p required for retrotransposition of long interspersed nuclear element-1. J. Biol. Chem. 282:24893-24904.
    • (2007) J. Biol. Chem. , vol.282 , pp. 24893-24904
    • Januszyk, K.1
  • 11
    • 0037225253 scopus 로고    scopus 로고
    • The esterase and PHD domains in CR1-like non-LTR retrotransposons
    • Kapitonov VV, Jurka J. 2003. The esterase and PHD domains in CR1-like non-LTR retrotransposons. Mol. Biol. Evol. 20:38-46.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 38-46
    • Kapitonov, V.V.1    Jurka, J.2
  • 12
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: drivers of genome evolution
    • Kazazian HH, Jr. 2004. Mobile elements: drivers of genome evolution. Science 303:1626-1632.
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian Jr., H.H.1
  • 13
    • 58849089283 scopus 로고    scopus 로고
    • Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame
    • Khazina E, Weichenrieder O. 2009. Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame. Proc. Natl. Acad. Sci. U. S. A. 106:731-736.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 731-736
    • Khazina, E.1    Weichenrieder, O.2
  • 14
    • 27744486591 scopus 로고    scopus 로고
    • Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition
    • Kulpa DA, Moran JV. 2005. Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition. Hum. Mol. Genet. 14:3237-3248.
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 3237-3248
    • Kulpa, D.A.1    Moran, J.V.2
  • 15
    • 23144448275 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism
    • Levin JG, Guo J, Rouzina I, Musier-Forsyth K. 2005. Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism. Prog. Nucleic Acid Res. Mol. Biol. 80:217-286.
    • (2005) Prog. Nucleic Acid Res. Mol. Biol. , vol.80 , pp. 217-286
    • Levin, J.G.1    Guo, J.2    Rouzina, I.3    Musier-Forsyth, K.4
  • 16
    • 0027450385 scopus 로고
    • Reverse transcription of R2BmRNAis primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
    • Luan DD, Korman MH, Jakubczak JL, Eickbush TH. 1993. Reverse transcription of R2BmRNAis primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 17
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • Lupas A, Van Dyke M, Stock J. 1991. Predicting coiled coils from protein sequences. Science 252:1162-1164.
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    Van Dyke, M.2    Stock, J.3
  • 18
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik HS, Burke WD, Eickbush TH. 1999. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16:793-805.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 20
    • 0035163939 scopus 로고    scopus 로고
    • Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon
    • Martin SL, Bushman FD. 2001. Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon. Mol. Cell. Biol. 21:467-475.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 467-475
    • Martin, S.L.1    Bushman, F.D.2
  • 21
    • 17144423310 scopus 로고    scopus 로고
    • LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein
    • Martin SL, et al. 2005. LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein. J. Mol. Biol. 348:549-561.
    • (2005) J. Mol. Biol. , vol.348 , pp. 549-561
    • Martin, S.L.1
  • 22
    • 0034680599 scopus 로고    scopus 로고
    • Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1
    • Martin SL, Li J, Weisz JA. 2000. Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1. J. Mol. Biol. 304:11-20.
    • (2000) J. Mol. Biol. , vol.304 , pp. 11-20
    • Martin, S.L.1    Li, J.2    Weisz, J.A.3
  • 23
    • 33745469630 scopus 로고    scopus 로고
    • Essential domains for ribonucleoprotein complex formation required for retrotransposition of telomere-specific non-long terminal repeat retrotransposon SART1
    • Matsumoto T, Hamada M, Osanai M, Fujiwara H. 2006. Essential domains for ribonucleoprotein complex formation required for retrotransposition of telomere-specific non-long terminal repeat retrotransposon SART1. Mol. Cell. Biol. 26:5168-5179.
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 5168-5179
    • Matsumoto, T.1    Hamada, M.2    Osanai, M.3    Fujiwara, H.4
  • 24
    • 0030606320 scopus 로고    scopus 로고
    • High frequency retrotransposition in cultured mammalian cells
    • Moran JV, et al. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87:917-927.
    • (1996) Cell , vol.87 , pp. 917-927
    • Moran, J.V.1
  • 25
    • 0026326273 scopus 로고
    • Predicting protein secondary structure based on amino acid sequence
    • Nishikawa K, Noguchi T. 1991. Predicting protein secondary structure based on amino acid sequence. Methods Enzymol. 202:31-44.
    • (1991) Methods Enzymol , vol.202 , pp. 31-44
    • Nishikawa, K.1    Noguchi, T.2
  • 26
    • 33751005610 scopus 로고    scopus 로고
    • Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2
    • Nomura Y, et al. 2006. Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2. Nucleic Acids Res. 34: 5184-5193.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5184-5193
    • Nomura, Y.1
  • 27
    • 34447300950 scopus 로고    scopus 로고
    • Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    • Putnam NH, et al. 2007. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86-94.
    • (2007) Science , vol.317 , pp. 86-94
    • Putnam, N.H.1
  • 28
    • 36249019206 scopus 로고    scopus 로고
    • Dissecting RNA chaperone activity
    • Rajkowitsch L, Schroeder R. 2007. Dissecting RNA chaperone activity. RNA. 13:2053-2060.
    • (2007) RNA , vol.13 , pp. 2053-2060
    • Rajkowitsch, L.1    Schroeder, R.2
  • 29
    • 0032942348 scopus 로고    scopus 로고
    • High-frequency retrotransposition of a marked I factor in Drosophila melanogaster correlates with a dynamic expression pattern of the ORF1 protein in the cytoplasm of oocytes
    • Seleme MC, Busseau I, Malinsky S, Bucheton A, Teninges D. 1999. High-frequency retrotransposition of a marked I factor in Drosophila melanogaster correlates with a dynamic expression pattern of the ORF1 protein in the cytoplasm of oocytes. Genetics 151:761-771.
    • (1999) Genetics , vol.151 , pp. 761-771
    • Seleme, M.C.1    Busseau, I.2    Malinsky, S.3    Bucheton, A.4    Teninges, D.5
  • 30
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • Söding J, Biegert A, Lupas AN. 2005. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33:W244-W248.
    • (2005) Nucleic Acids Res , vol.33
    • Söding, J.1    Biegert, A.2    Lupas, A.N.3
  • 31
    • 31844442956 scopus 로고    scopus 로고
    • Isolation and characterization of retrotransposition-competent LINEs from zebrafish
    • Sugano T, Kajikawa M, Okada N. 2006. Isolation and characterization of retrotransposition-competent LINEs from zebrafish. Gene 365: 74-82.
    • (2006) Gene , vol.365 , pp. 74-82
    • Sugano, T.1    Kajikawa, M.2    Okada, N.3
  • 32
    • 65649135139 scopus 로고    scopus 로고
    • Genetic evidence that the non-homologous endjoining repair pathway is involved in LINE retrotransposition
    • Suzuki J, et al. 2009. Genetic evidence that the non-homologous endjoining repair pathway is involved in LINE retrotransposition. PLoS Genet. 5:e1000461.
    • (2009) PLoS Genet , vol.5
    • Suzuki, J.1
  • 33
    • 0036470563 scopus 로고    scopus 로고
    • Transplantation of target site specificity by swapping the endonuclease domains of two LINEs
    • Takahashi H, Fujiwara H. 2002. Transplantation of target site specificity by swapping the endonuclease domains of two LINEs. EMBO J. 21: 408-417.
    • (2002) EMBO J , vol.21 , pp. 408-417
    • Takahashi, H.1    Fujiwara, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.