메뉴 건너뛰기




Volumn 499, Issue 1, 2012, Pages 163-168

Identification and characterization of the microRNAs and their targets in Salmo salar

Author keywords

Blast; Comparative genomics; MicroRNAs; Salmo salar

Indexed keywords

MICRORNA; MICRORNA 1; MICRORNA 122; MICRORNA 126; MICRORNA 128; MICRORNA 129; MICRORNA 132; MICRORNA 133; MICRORNA 142; MICRORNA 144; MICRORNA 147; MICRORNA 148; MICRORNA 1787; MICRORNA 1814; MICRORNA 196; MICRORNA 202; MICRORNA 21; MICRORNA 212; MICRORNA 2189; MICRORNA 22; MICRORNA 223; MICRORNA 3540; MICRORNA 7; MICRORNA 9; MICRORNA 92; MICRORNA 96; MICRORNA LET 7; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 84859746460     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.03.006     Document Type: Article
Times cited : (60)

References (51)
  • 1
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during transacting siRNA biogenesis in plants
    • Allen E., Xie Z., Gustafson A.M., Carrington J.C. microRNA-directed phasing during transacting siRNA biogenesis in plants. Cell 2005, 121:207-221.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 3
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • Ambros V., Bartel B., Bartel D.P. A uniform system for microRNA annotation. RNA 2003, 9:277-279.
    • (2003) RNA , vol.9 , pp. 277-279
    • Ambros, V.1    Bartel, B.2    Bartel, D.P.3
  • 4
    • 0242361521 scopus 로고    scopus 로고
    • Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
    • Aukerman M.J., Sakai H. Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 2003, 15:2730-2741.
    • (2003) Plant Cell , vol.15 , pp. 2730-2741
    • Aukerman, M.J.1    Sakai, H.2
  • 5
    • 84863765590 scopus 로고    scopus 로고
    • The Novel 172 Sheep (Ovis aries) microRNAs and their targets
    • Barozai M.Y.K. The Novel 172 Sheep (Ovis aries) microRNAs and their targets. Mol. Biol. Rep. 2012, 10.1007/s11033-012-1446-x.
    • (2012) Mol. Biol. Rep.
    • Barozai, M.Y.K.1
  • 6
    • 84860338068 scopus 로고    scopus 로고
    • Identification of biotic and abiotic stress up-regulated ESTs in Gossypium arboretum
    • Barozai M.Y.K., Husnain T. Identification of biotic and abiotic stress up-regulated ESTs in Gossypium arboretum. Mol. Biol. Rep. 2011, 39(2):1011-1018.
    • (2011) Mol. Biol. Rep. , vol.39 , Issue.2 , pp. 1011-1018
    • Barozai, M.Y.K.1    Husnain, T.2
  • 7
    • 48749125929 scopus 로고    scopus 로고
    • Identification of micro-RNAs in cotton
    • Barozai M.Y.K., et al. Identification of micro-RNAs in cotton. Plant Physiol. Bio- chem. 2008, 46(8-9):739-751.
    • (2008) Plant Physiol. Bio- chem. , vol.46 , Issue.8-9 , pp. 739-751
    • Barozai, M.Y.K.1
  • 8
    • 84863844685 scopus 로고    scopus 로고
    • Identification of microRNAs and their targets in Helianthus
    • Barozai M.Y.K., Baloch I.A., Din M. Identification of microRNAs and their targets in Helianthus. Mol. Biol. Rep. 2011, 39(3):2523-2532.
    • (2011) Mol. Biol. Rep. , vol.39 , Issue.3 , pp. 2523-2532
    • Barozai, M.Y.K.1    Baloch, I.A.2    Din, M.3
  • 9
    • 79953664746 scopus 로고    scopus 로고
    • Computational identification of microRNAs and their targets in two species of evergreen spruce tree (Picea)
    • Barozai M.Y.K., Baloch I.A., Din M. Computational identification of microRNAs and their targets in two species of evergreen spruce tree (Picea). PWASET 2011, 75:413-418.
    • (2011) PWASET , vol.75 , pp. 413-418
    • Barozai, M.Y.K.1    Baloch, I.A.2    Din, M.3
  • 10
    • 84859776063 scopus 로고    scopus 로고
    • Identification of microRNAs in ecological model plant Mimulus
    • Barozai M.Y.K., Din M., Baloch I.A. Identification of microRNAs in ecological model plant Mimulus. J. Biophys. Chem. 2011, 2(3):322-331. 10.4236/jbpc.2011.23037.
    • (2011) J. Biophys. Chem. , vol.2 , Issue.3 , pp. 322-331
    • Barozai, M.Y.K.1    Din, M.2    Baloch, I.A.3
  • 11
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 12
    • 14344260087 scopus 로고    scopus 로고
    • HIV-1 encoded candidate micro-RNAs and their cellular targets
    • Bennasser Y., Le S.Y., Yeung M.L., Jeang K.T. HIV-1 encoded candidate micro-RNAs and their cellular targets. Retroviro 2004, 1(1):43.
    • (2004) Retroviro , vol.1 , Issue.1 , pp. 43
    • Bennasser, Y.1    Le, S.Y.2    Yeung, M.L.3    Jeang, K.T.4
  • 13
    • 3843089328 scopus 로고    scopus 로고
    • Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
    • Bonnet E., Wuyts J., Rouze P., Van-de-Peer Y. Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes. PNAS USA 2004, 101:11511-11516.
    • (2004) PNAS USA , vol.101 , pp. 11511-11516
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van-de-Peer, Y.4
  • 15
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • Carrington J.C., Ambros V. Role of microRNAs in plant and animal development. Science 2003, 301:336-338.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 16
    • 45849084987 scopus 로고    scopus 로고
    • Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs
    • Caygill E.E., Johnston L.A. Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs. Curr. Biol. 2008, 18(13):943-950.
    • (2008) Curr. Biol. , vol.18 , Issue.13 , pp. 943-950
    • Caygill, E.E.1    Johnston, L.A.2
  • 17
    • 1642366133 scopus 로고    scopus 로고
    • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
    • Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 2003, 303:2022-2025.
    • (2003) Science , vol.303 , pp. 2022-2025
    • Chen, X.1
  • 19
    • 45849131260 scopus 로고    scopus 로고
    • Data mining for miRNAs and their targets in the Triticeae
    • Dryanova A., Zakharov A., Gulick P.J. Data mining for miRNAs and their targets in the Triticeae. Genome 2008, 51:433-443.
    • (2008) Genome , vol.51 , pp. 433-443
    • Dryanova, A.1    Zakharov, A.2    Gulick, P.J.3
  • 20
    • 63049110327 scopus 로고    scopus 로고
    • Diversity and evolution of microRNA gene clusters
    • Feng Z.Y., Rui Z., Bing S.U. Diversity and evolution of microRNA gene clusters. Sci. China Ser. C-Life Sci. 2009, 52(3):261-266.
    • (2009) Sci. China Ser. C-Life Sci. , vol.52 , Issue.3 , pp. 261-266
    • Feng, Z.Y.1    Rui, Z.2    Bing, S.U.3
  • 21
    • 77952572587 scopus 로고    scopus 로고
    • New perspectives in microRNA regulation of innate immunity
    • Gantier M.P. New perspectives in microRNA regulation of innate immunity. J. Interf. Cytok. Res. 2010, 30(5):283-289.
    • (2010) J. Interf. Cytok. Res. , vol.30 , Issue.5 , pp. 283-289
    • Gantier, M.P.1
  • 22
    • 0034014029 scopus 로고    scopus 로고
    • Ecological determinants and temporal stability of the within-river population structure in Atlantic salmon (Salmo salar L.)
    • Garant D., Dodson J.J., Bernatchez L. Ecological determinants and temporal stability of the within-river population structure in Atlantic salmon (Salmo salar L.). Mol. Ecol. 2000, 9(5):615-628.
    • (2000) Mol. Ecol. , vol.9 , Issue.5 , pp. 615-628
    • Garant, D.1    Dodson, J.J.2    Bernatchez, L.3
  • 24
    • 48849117482 scopus 로고    scopus 로고
    • MicroRNA control of cell-cell signaling during development and disease
    • Hagen J.W., Lai E.C. microRNA control of cell-cell signaling during development and disease. Cell Cycle 2008, 7:2327-2332.
    • (2008) Cell Cycle , vol.7 , pp. 2327-2332
    • Hagen, J.W.1    Lai, E.C.2
  • 25
    • 0034673638 scopus 로고    scopus 로고
    • An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells
    • Hammond S.C., Bernstein E., Beach D., Hannon G.J. An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells. Nature 2000, 404:293-296.
    • (2000) Nature , vol.404 , pp. 293-296
    • Hammond, S.C.1    Bernstein, E.2    Beach, D.3    Hannon, G.J.4
  • 26
    • 77349092849 scopus 로고    scopus 로고
    • Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    • Jagadeeswaran G., et al. Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Gen. 2010, 11:52.
    • (2010) BMC Gen. , vol.11 , pp. 52
    • Jagadeeswaran, G.1
  • 27
    • 20044395613 scopus 로고    scopus 로고
    • RAS is regulated by the let-7 microRNA family
    • Johnson S.M., et al. RAS is regulated by the let-7 microRNA family. Cell 2005, 120(5):635-647.
    • (2005) Cell , vol.120 , Issue.5 , pp. 635-647
    • Johnson, S.M.1
  • 29
    • 79958294087 scopus 로고    scopus 로고
    • In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants
    • Kim H.J., Baek K.H., Lee B.W., Choi D., Hura C.G. In silico identification and characterization of microRNAs and their putative target genes in Solanaceae plants. Genome 2001, 54(2):91-98.
    • (2001) Genome , vol.54 , Issue.2 , pp. 91-98
    • Kim, H.J.1    Baek, K.H.2    Lee, B.W.3    Choi, D.4    Hura, C.G.5
  • 30
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: microRNA target prediction easy, fast and flexible
    • Kruger J., Rehmsmeier M. RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res. 2006, 34(Suppl. 2):W451-W454.
    • (2006) Nucleic Acids Res. , vol.34 , Issue.SUPPL. 2
    • Kruger, J.1    Rehmsmeier, M.2
  • 31
    • 36448991500 scopus 로고    scopus 로고
    • ClustalW and ClustalX version 2
    • Larkin M.A., et al. ClustalW and ClustalX version 2. Bioinformatics 2007, 23(21):2947-2948.
    • (2007) Bioinformatics , vol.23 , Issue.21 , pp. 2947-2948
    • Larkin, M.A.1
  • 32
    • 77952680189 scopus 로고    scopus 로고
    • Identification of homologous microRNAs in 56 animal genomes
    • Li S.C., Chan W.C., Hu L.Y., Lai C.H., Hsu C.N., Lin W. Identification of homologous microRNAs in 56 animal genomes. Genomics 2010, 96(2010):1-9.
    • (2010) Genomics , vol.96 , Issue.2010 , pp. 1-9
    • Li, S.C.1    Chan, W.C.2    Hu, L.Y.3    Lai, C.H.4    Hsu, C.N.5    Lin, W.6
  • 33
    • 34347376692 scopus 로고    scopus 로고
    • Characterization of microRNA expression profiles in normal human tissues
    • Liang Y., Ridzon D., Wong L., Chen C. Characterization of microRNA expression profiles in normal human tissues. BMC Gen. 2007, 8:166.
    • (2007) BMC Gen. , vol.8 , pp. 166
    • Liang, Y.1    Ridzon, D.2    Wong, L.3    Chen, C.4
  • 34
    • 27744471144 scopus 로고    scopus 로고
    • Novel and mechanical stress responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
    • Lu S., Sun Y.H., Shi R., Clark C., Li L., Chiang V.L. Novel and mechanical stress responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005, 17:2186-2203.
    • (2005) Plant Cell , vol.17 , pp. 2186-2203
    • Lu, S.1    Sun, Y.H.2    Shi, R.3    Clark, C.4    Li, L.5    Chiang, V.L.6
  • 35
    • 33846277354 scopus 로고    scopus 로고
    • A family of microRNAs present in plants and animals
    • Mario A.V., Juan C.P., Jean-Philippe V.C. A family of microRNAs present in plants and animals. Plant Cell 2006, 18:3355-3369.
    • (2006) Plant Cell , vol.18 , pp. 3355-3369
    • Mario, A.V.1    Juan, C.P.2    Jean-Philippe, V.C.3
  • 36
    • 33747878547 scopus 로고    scopus 로고
    • Characterization of five microRNA families in maize
    • Mica E., Gianfranceschi L., Pe M.E. Characterization of five microRNA families in maize. J. Exp. Bot. 2006, 57(11):2601-2612.
    • (2006) J. Exp. Bot. , vol.57 , Issue.11 , pp. 2601-2612
    • Mica, E.1    Gianfranceschi, L.2    Pe, M.E.3
  • 37
    • 3142615372 scopus 로고    scopus 로고
    • The RNAi revolution
    • Novina C.D., Sharp P.A. The RNAi revolution. Nature 2004, 430:161-164.
    • (2004) Nature , vol.430 , pp. 161-164
    • Novina, C.D.1    Sharp, P.A.2
  • 38
    • 34247624029 scopus 로고    scopus 로고
    • Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags
    • Qiu C.X., et al. Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags. Gene 2007, 395(1-2):49-61.
    • (2007) Gene , vol.395 , Issue.1-2 , pp. 49-61
    • Qiu, C.X.1
  • 40
    • 37549010761 scopus 로고    scopus 로고
    • MicroRNA-implications for cancer
    • Sassen S., Miska E.A., Caldas C. MicroRNA-implications for cancer. Virchows Arch. 2008, 452(1):1-10.
    • (2008) Virchows Arch. , vol.452 , Issue.1 , pp. 1-10
    • Sassen, S.1    Miska, E.A.2    Caldas, C.3
  • 41
    • 67651002343 scopus 로고    scopus 로고
    • Emerging roles of microRNAs as molecular switches in the integrated circuit of the cancer cell
    • Aug
    • Sotiropoulou G., Pampalakis G., Lianidou E., Mourelatos Z. Emerging roles of microRNAs as molecular switches in the integrated circuit of the cancer cell. RNA 2009, 15(8):1443-1461. Aug.
    • (2009) RNA , vol.15 , Issue.8 , pp. 1443-1461
    • Sotiropoulou, G.1    Pampalakis, G.2    Lianidou, E.3    Mourelatos, Z.4
  • 42
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST, a new generation of protein database search programs
    • Stephen F.A., et al. Gapped BLAST and PSI-BLAST, a new generation of protein database search programs. Nucleic Acids Res. 1997, 25(1997):3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , Issue.1997 , pp. 3389-3402
    • Stephen, F.A.1
  • 43
    • 4043074968 scopus 로고    scopus 로고
    • Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    • Sunkar R., Zhu J.K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004, 16:2001-2019.
    • (2004) Plant Cell , vol.16 , pp. 2001-2019
    • Sunkar, R.1    Zhu, J.K.2
  • 44
  • 45
    • 11444251652 scopus 로고    scopus 로고
    • New human and mouse microRNA genes found by homology search
    • Weber M.J. New human and mouse microRNA genes found by homology search. FEBS J. 2005, 272:59-73.
    • (2005) FEBS J. , vol.272 , pp. 59-73
    • Weber, M.J.1
  • 46
    • 77953683331 scopus 로고    scopus 로고
    • Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum)
    • Xie F., Frazier T.P., Zhang B. Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum). Planta 2010, 232:417-434.
    • (2010) Planta , vol.232 , pp. 417-434
    • Xie, F.1    Frazier, T.P.2    Zhang, B.3
  • 47
    • 24944491201 scopus 로고    scopus 로고
    • A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
    • Yoshikawa M., Peragine A., Park M.Y., Poethig R.S. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev. 2005, 19:2164-2175.
    • (2005) Genes Dev. , vol.19 , pp. 2164-2175
    • Yoshikawa, M.1    Peragine, A.2    Park, M.Y.3    Poethig, R.S.4
  • 48
    • 33748286897 scopus 로고    scopus 로고
    • Human microRNA clusters: genomic organization and expression profile in leukemia cell lines
    • Yu J., et al. Human microRNA clusters: genomic organization and expression profile in leukemia cell lines. Biochem. Biophys. Res. Commun. 2006, 349:59-68.
    • (2006) Biochem. Biophys. Res. Commun. , vol.349 , pp. 59-68
    • Yu, J.1
  • 49
    • 48849103603 scopus 로고    scopus 로고
    • MicroRNA miR-124 regulates neurite outgrowth during neuronal differentiation
    • Yu J.Y., Chung K.H., Deo M., Thompson R.C., Turner D.L. MicroRNA miR-124 regulates neurite outgrowth during neuronal differentiation. Exp. Cell Res. 2008, 314(14):2618-2633.
    • (2008) Exp. Cell Res. , vol.314 , Issue.14 , pp. 2618-2633
    • Yu, J.Y.1    Chung, K.H.2    Deo, M.3    Thompson, R.C.4    Turner, D.L.5
  • 50
    • 34250818778 scopus 로고    scopus 로고
    • Identification of cotton microRNAs and their targets
    • Zhang B., et al. Identification of cotton microRNAs and their targets. Gene 2007, 397(1-2):26-37.
    • (2007) Gene , vol.397 , Issue.1-2 , pp. 26-37
    • Zhang, B.1
  • 51
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.