Characterization of human phosphodiesterase 12 and identification of a novel 2′-5′ oligoadenylate nuclease - The ectonucleotide pyrophosphatase/phosphodiesterase 1

Biochimie

Volumn 94, Issue 5, 2012, Pages 1098-1107

  Poulsen, Jesper B ^a   Andersen, Kasper R ^a   Kjær, Karina H ^a   Vestergaard, Anna L ^a   Justesen, Just ^a   Martensen, Pia M ^a  

^a AARHUS UNIVERSITY   (Denmark)

Author keywords

2 5 oligoadenylate nucleases; 2 5 linked oligoadenylate polyribonucleotides (2 5As); 2 5A catabolism; 5 dephosphorylated 2 5As (2 5A core molecules); 5 triphosphorylated; Phosphodiesterase 12

Indexed keywords

DIVALENT CATION; PHOSPHODIESTERASE; PHOSPHODIESTERASE 12; PHOSPHODIESTERASE I; POLYADENYLATE SPECIFIC RIBONUCLEASE; UNCLASSIFIED DRUG;

ARTICLE; CATABOLISM; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME KINETICS; HUMAN; HUMAN CELL; IN VITRO STUDY; NUCLEOTIDE SEQUENCE; PH; TEMPERATURE;

ADENINE NUCLEOTIDES; COMPUTATIONAL BIOLOGY; HUMANS; IMMUNOBLOTTING; OLIGORIBONUCLEOTIDES; PHOSPHORIC DIESTER HYDROLASES; PYROPHOSPHATASES; RIBONUCLEASES;

VERTEBRATA;

EID: 84859420520     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2012.01.012     Document Type: Article

References (66)

1. C.E. Samuel Antiviral actions of interferon. Interferon-regulated cellular proteins and their surprisingly selective antiviral activities Virology 183 1991 1 11
2. G.R. Stark, I.M. Kerr, B.R. Williams, R.H. Silverman, and R.D. Schreiber How cells respond to interferons Annual Review of Biochemistry 67 1998 227 264
3. A. Takaoka, and H. Yanai Interferon signalling network in innate defence Cellular Microbiology 8 2006 907 922
4. C.E. Samuel Antiviral actions of interferons Clinical Microbiology Reviews 14 2001 778 809
5. E.M. Coccia, G. Romeo, A. Nissim, G. Marziali, R. Albertini, E. Affabris, A. Battistini, G. Fiorucci, R. Orsatti, and G.B. Rossi A full-length murine 2-5A synthetase cDNA transfected in NIH-3T3 cells impairs EMCV but not VSV replication Virology 179 1990 228 233
6. P. Lengyel Tumor-suppressor genes: news about the interferon connection Proceedings of the National Academy of Sciences of the United States of America 90 1993 5893 5895
7. M.R. Player, and P.F. Torrence The 2-5A system: modulation of viral and cellular processes through acceleration of RNA degradation Pharmacology and Theraupeutics 78 1998 55 113
8. A.G. Hovanessian, and J. Justesen The human 2′- 5′oligoadenylate synthetase family: unique interferon-inducible enzymes catalyzing 2′-5′ instead of 3′-5′ phosphodiester bond formation Biochimie 89 2007 779 788
9. J. Justesen, R. Hartmann, and N.O. Kjeldgaard Gene structure and function of the 2′-5′-oligoadenylate synthetase family Cellular and Molecular Life Sciences 57 2000 1593 1612
10. D. Rebouillat, and A.G. Hovanessian The human 2′,5′- oligoadenylate synthetase family: interferon-induced proteins with unique enzymatic properties Journal of Interferon and Cytokine Research 19 1999 295 308
11. S.S. Carroll, E. Chen, T. Viscount, J. Geib, M.K. Sardana, J. Gehman, and L.C. Kuo Cleavage of oligoribonucleotides by the 2′,5′- oligoadenylate- dependent ribonuclease L The Journal of Biological Chemistry 271 1996 4988 4992
12. D.H. Wreschner, J.W. McCauley, J.J. Skehel, and I.M. Kerr Interferon action-sequence specificity of the ppp(A2′p)nA-dependent ribonuclease Nature 289 1981 414 417
13. A. Zhou, R.J. Molinaro, K. Malathi, and R.H. Silverman Mapping of the human RNASEL promoter and expression in cancer and normal cells Journal of Interferon and Cytokine Research 25 2005 595 603
14. G. Floyd-Smith, E. Slattery, and P. Lengyel Interferon action: RNA cleavage pattern of a (2′-5′)oligoadenylate-dependent endonuclease Science (New York, N.Y) 212 1981 1030 1032
15. J. Castelli, K.A. Wood, and R.J. Youle The 2-5A system in viral infection and apoptosis Biomedicine and Pharmacotherapy 52 1998 386 390
16. M.A. Minks, S. Benvin, P.A. Maroney, and C. Baglioni Metabolic stability of 2′ 5′oligo (A) and activity of 2′ 5′oligo (A)-dependent endonuclease in extracts of interferon-treated and control HeLa cells Nucleic Acids Research 6 1979 767 780
17. B.R. Williams, I.M. Kerr, C.S. Gilbert, C.N. White, and L.A. Ball Synthesis and breakdown of pppA2′p5′A2′p5′A and transient inhibiton of protein synthesis in extracts from interferon-treated and control cells European Journal of Biochemistry/FEBS 92 1978 455 462
18. P.W. Doetsch, R.J. Suhadolnik, Y. Sawada, J.D. Mosca, M.B. Flick, N.L. Reichenbach, A.Q. Dang, J.M. Wu, R. Charubala, W. Pfleiderer, and E.E. Henderson Core (2′-5′)oligoadenylate and the cordycepin analog: inhibitors of Epstein-Barr virus-induced transformation of human lymphocytes in the absence of interferon Proceedings of the National Academy of Sciences of the United States of America 78 1981 6699 6703
19. M. Jurovcik, and J. Smrt Inhibition of protein synthesis by exogenous A2′p5′A2′p5′A (2-5 A core) and its bis-phosphoramidate analog in intact mouse lymphocytes, hepatocytes and bone marrow cells FEBS Letters 133 1981 178 180
20. A. Kimchi, H. Shure, and M. Revel Anti-mitogenic function of interferon-induced (2′-5′)oligo(adenylate) and growth-related variations in enzymes that synthesize and degrade this oligonucleotide European Journal of Biochemistry/FEBS 114 1981 5 10
21. B. Dong, L. Xu, A. Zhou, B.A. Hassel, X. Lee, P.F. Torrence, and R.H. Silverman Intrinsic molecular activities of the interferon-induced 2-5A-dependent RNase The Journal of Biological Chemistry 269 1994 14153 14158
22. M.I. Johnston, and W.G. Hearl Purification and characterization of a 2′-phosphodiesterase from bovine spleen The Journal of Biological Chemistry 262 1987 8377 8382
23. K. Kubota, K. Nakahara, T. Ohtsuka, S. Yoshida, J. Kawaguchi, Y. Fujita, Y. Ozeki, A. Hara, C. Yoshimura, H. Furukawa, H. Haruyama, K. Ichikawa, M. Yamashita, T. Matsuoka, and Y. Iijima Identification of 2′- phosphodiesterase, which plays a role in the 2-5A system regulated by interferon The Journal of Biological Chemistry 279 2004 37832 37841
24. M. Nakanishi, N. Tanaka, Y. Mizutani, M. Mochizuki, Y. Ueno, K.T. Nakamura, and Y. Kitade Functional characterization of 2′,5′-linked oligoadenylate binding determinant of human RNase L The Journal of Biological Chemistry 280 2005 41694 41699
25. J.B. Poulsen, K.R. Andersen, K.H. Kjaer, F. Durand, P. Faou, A.L. Vestergaard, G.H. Talbo, N. Hoogenraad, D.E. Brodersen, J. Justesen, and P.M. Martensen Human 2′-phosphodiesterase localizes to the mitochondrial matrix with a putative function in mitochondrial RNA turnover Nucleic Acids Research 39 2011 3754 3770
26. J. Rorbach, T.J. Nicholls, and M. Minczuk PDE12 removes mitochondrial RNA poly(A) tails and controls translation in human mitochondria Nucleic Acids Research 39 2011 7750 7763
27. B.A. Bayard, and J.B. Gabrion 2′,5′-Oligoadenylate-dependent RNAse located in nuclei: biochemical characterization and subcellular distribution of the nuclease in human and murine cells The Biochemical Journal 296 1993 155 160 Pt 1
28. S. Besse, D. Rebouillat, I. Marie, F. Puvion-Dutilleul, and A.G. Hovanessian Ultrastructural localization of interferon-inducible double-stranded RNA-activated enzymes in human cells Experimental Cell Research 239 1998 379 392
29. J. Chebath, P. Benech, A. Hovanessian, J. Galabru, and M. Revel Four different forms of interferon-induced 2′,5′-oligo(A) synthetase identified by immunoblotting in human cells The Journal of Biological Chemistry 262 1987 3852 3857
30. G. Floyd-Smith, O. Yoshie, and P. Lengyel Interferon action. Covalent linkage of (2′-5′)pppApApA(32P)pCp to (2′-5′)(A)n- dependent ribonucleases in cell extracts by ultraviolet irradiation The Journal of Biological Chemistry 257 1982 8584 8587
31. A.G. Hovanessian, A.G. Laurent, J. Chebath, J. Galabru, N. Robert, and J. Svab Identification of 69-kd and 100-kd forms of 2-5A synthetase in interferon-treated human cells by specific monoclonal antibodies The EMBO Journal 6 1987 1273 1280
32. A.G. Hovanessian, J. Wood, E. Meurs, and L. Montagnier Increased nuclease activity in cells treated with pppA2′p5′A2′p5′ A Proceedings of the National Academy of Sciences of the United States of America 76 1979 3261 3265
33. F. Le Roy, C. Bisbal, M. Silhol, C. Martinand, B. Lebleu, and T. Salehzada The 2-5A/RNase L/RNase L inhibitor (RLI) [correction of (RNI)] pathway regulates mitochondrial mRNAs stability in interferon alpha-treated H9 cells The Journal of Biological Chemistry 276 2001 48473 48482
34. E.D. Duee, and P.V. Vignais Exchange between extra- and intramitochondrial adenine nucleotides Biochimica et Biophysica Acta 107 1965 184 188
35. H.W. Heldt, H. Jacobs, and M. Klingenberg Endogenous Adp of mitochondria, an early phosphate acceptor of oxidative phosphorylation as disclosed by kinetic Studies with C14 labelled Adp and Atp and with Atractyloside Biochemical and Biophysical Research Communications 18 1965 174 179
36. E. Saby, J.B. Poulsen, J. Justesen, M. Kelve, and M.J. Uriz 2′-Phosphodiesterase and 2′,5′-oligoadenylate synthetase activities in the lowest metazoans, sponge [porifera] Biochimie 91 2009 1531 1534
37. E.S. Sztul, J.P. Hendrick, J.P. Kraus, D. Wall, F. Kalousek, and L.E. Rosenberg Import of rat ornithine transcarbamylase precursor into mitochondria: two-step processing of the leader peptide The Journal of Cell Biology 105 1987 2631 2639
38. S.M. Chien, H.V. Patel, and K.B. Freeman Import of rat liver mitochondrial malate dehydrogenase. Binding of the precursor to mitochondria, an intermediate step in import The Journal of Biological Chemistry 259 1984 13633 13636
39. N. Pfanner, and A. Geissler Versatility of the mitochondrial protein import machinery Nature Reviews 2 2001 339 349
40. A.T. Jonstrup, K.R. Andersen, L.B. Van, and D.E. Brodersen The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme Nucleic Acids Research 35 2007 3153 3164
41. A. Schmidt, Y. Chernajovsky, L. Shulman, P. Federman, H. Berissi, and M. Revel An interferon-induced phosphodiesterase degrading (2′-5′) oligoisoadenylate and the C-C-A terminus of tRNA Proceedings of the National Academy of Sciences of the United States of America 76 1979 4788 4792
42. M.F. Abad, G. Di Benedetto, P.J. Magalhaes, L. Filippin, and T. Pozzan Mitochondrial pH monitored by a new engineered green fluorescent protein mutant The Journal of Biological Chemistry 279 2004 11521 11529
43. J. Llopis, J.M. McCaffery, A. Miyawaki, M.G. Farquhar, and R.Y. Tsien Measurement of cytosolic, mitochondrial, and Golgi pH in single living cells with green fluorescent proteins Proceedings of the National Academy of Sciences of the United States of America 95 1998 6803 6808
44. R. Rossignol, R. Gilkerson, R. Aggeler, K. Yamagata, S.J. Remington, and R.A. Capaldi Energy substrate modulates mitochondrial structure and oxidative capacity in cancer cells Cancer Research 64 2004 985 993
45. G.R. Bright, G.W. Fisher, J. Rogowska, and D.L. Taylor Fluorescence ratio imaging microscopy: temporal and spatial measurements of cytoplasmic pH The Journal of Cell Biology 104 1987 1019 1033
46. E.F. Corbett, and M. Michalak Calcium, a signaling molecule in the endoplasmic reticulum? Trends in Biochemical Sciences 25 2000 307 311
47. R. Rizzuto, and T. Pozzan Microdomains of intracellular Ca2+: molecular determinants and functional consequences Physiological Reviews 86 2006 369 408
48. L. Vay, E. Hernandez-SanMiguel, C.D. Lobaton, A. Moreno, M. Montero, and J. Alvarez Mitochondrial free [Ca2+] levels and the permeability transition Cell Calcium 45 2009 243 250
49. A.B. Parekh Mitochondrial regulation of intracellular Ca2+ signaling: more than just simple Ca2+ buffers News in Physiological Sciences 18 2003 252 256
50. S. Cerdan, C.J. Lusty, K.N. Davis, J.A. Jacobsohn, and J.R. Williamson Role of calcium as an inhibitor of rat liver carbamylphosphate synthetase I The Journal of Biological Chemistry 259 1984 323 331
51. Z. Damuni, M.L. Merryfield, J.S. Humphreys, and L.J. Reed Purification and properties of branched-chain alpha-keto acid dehydrogenase phosphatase from bovine kidney Proceedings of the National Academy of Sciences of the United States of America 81 1984 4335 4338
52. R.M. Denton, P.J. Randle, and B.R. Martin Stimulation by calcium ions of pyruvate dehydrogenase phosphate phosphatase The Biochemical Journal 128 1972 161 163
53. R.M. Denton, D.A. Richards, and J.G. Chin Calcium ions and the regulation of NAD+-linked isocitrate dehydrogenase from the mitochondria of rat heart and other tissues The Biochemical Journal 176 1978 899 906
54. J.G. McCormack, and R.M. Denton The effects of calcium ions and adenine nucleotides on the activity of pig heart 2-oxoglutarate dehydrogenase complex The Biochemical Journal 180 1979 533 544
55. A.J. Meijer, G.M. van Woerkom, R. Steinman, and J.R. Williamson Inhibition of Ca2+ of carbamoylphosphate synthetase (ammonia) The Journal of Biological Chemistry 256 1981 3443 3446
56. T.B. Patel, and M.S. Olson Evidence for the regulation of the branched chain alpha-keto acid dehydrogenase multienzyme complex by a phosphorylation/dephosphorylation mechanism Biochemistry 21 1982 4259 4265
57. J.M. Wimhurst, and K.L. Manchester Some aspects of the kinetics of rat liver pyruvate carboxylase The Biochemical Journal 120 1970 79 93
58. S.I. Belli, and J.W. Goding Biochemical characterization of human PC-1, an enzyme possessing alkaline phosphodiesterase I and nucleotide pyrophosphatase activities European Journal of Biochemistry/FEBS 226 1994 433 443
59. S.J. Kelly, D.E. Dardinger, and L.G. Butler Hydrolysis of phosphonate esters catalyzed by 5′-nucleotide phosphodiesterase Biochemistry 14 1975 4983 4988
60. M. Landt, and L.G. Butler 5′-Nucleotide phosphodiesterase: isolation of covalently bound 5′-adenosine monophosphate, an intermediate in the catalytic mechanism Biochemistry 17 1978 4130 4135
61. W.H. Evans, D.O. Hood, and J.W. Gurd Purification and properties of a mouse liver plasma-membrane glycoprotein hydrolysing nucleotide pyrophosphate and phosphodiester bonds The Biochemical Journal 135 1973 819 826
62. M.A. Skinner Murine plasma cell antigen PC-1 has a region homologous to the active site of bovine intestinal 5′-nucleotide phosphodiesterase I (EC 3.1.4.1) Nucleic Acids Research 19 1991 6049
63. R.E. Brown, and I.M. Kerr (p)pp(A2′p)nA is rare in normal mouse tissues while (A2′p)nA but not (p)pp(A2′p)nA appears to be present in E. coli Progress in Clinical Biology Research 202 1985 3 10
64. W.G. Hearl, and M.I. Johnston Accumulation of 2′,5′- oligoadenylates in encephalomyocarditis virus-infected mice Journal of Virology 61 1987 1586 1592
65. C.L. Hersh, R.E. Brown, W.K. Roberts, E.A. Swyryd, I.M. Kerr, and G.R. Stark Simian virus 40-infected, interferon-treated cells contain 2′,5′-oligoadenylates which do not activate cleavage of RNA The Journal of Biological Chemistry 259 1984 1731 1737
66. A.P. Rice, W.K. Roberts, and I.M. Kerr 2-5A accumulates to high levels in interferon-treated, vaccinia virus-infected cells in the absence of any inhibition of virus replication Journal of Virology 50 1984 220 228