Disentangling temporal patterns in our perception of the fossil history of gymnosperms

Historical Biology

Volumn 24, Issue 2, 2012, Pages 143-159

  Cascales Miñana, Borja ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

Author keywords

extinction intensity; paleobotanical record; singleton taxa; temporal data analysis; timescale factor

Indexed keywords

DATA SET; EVOLUTION; EXTINCTION; FOSSIL RECORD; GYMNOSPERM; LIFE HISTORY; PALEOBOTANY; PERCEPTION; QUANTITATIVE ANALYSIS; TAXONOMY; TEMPORAL VARIATION; TIME DEPENDENT BEHAVIOR;

GYMNOSPERMAE;

EID: 84859324201     PISSN: 08912963     EISSN: 10292381     Source Type: Journal    
DOI: 10.1080/08912963.2011.587186     Document Type: Article

References (82)

1. Alroy, J. 2003. Global databases will yield reliable measures of global biodiversity. Paleobiology, 29(1): 26-29.
2. Alroy, J, Marshall, CR, Bambach, RK, Bezusko, K, Foote, M, Fursich, FT, Hansen, TA, Holland, SM, Ivany, LC Jablonski, D. 2001. Effects of sampling standardization on estimates of Phanerozoic marine diversification. Proc Natl Acad Sci USA, 98(11): 6261-6266.
3. Anderson, JM, Anderson, HM and Cleal, CJ. 2007. Brief history of the gymnosperms: classification, biodiversity, phytogeography and ecology. Pretoria: Strelitzia, 20: 279
4. Beck, CB. 1988. Origin and evolution of gymnosperms, 504New York: Columbia University Press.
5. Burleigh, JG and Mathews, S. 2004. Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life. Am J Bot, 91(10): 1599-1613.
6. Burleigh, JG and Mathews, S. 2007. Assessing systematic error in the inference of seed plant phylogeny. Int J Plant Sci, 168(2): 125-135.
7. Bush, AM, Powell, MG, Arnold, WS, Bert, TM and Daley, GM. 2002. Time-averaging, evolution, and morphologic variation. Paleobiology, 28(1): 9-25.
8. Cascales-Miñana, B. 2010. New insights into the reading of Paleozoic plant fossil record discontinuities. Hist Biol, 23(2-3): 115-130.
9. Cascales-Miñana B, Cleal CJ. 2011. Plant fossil record and survival analyses. Lethaia. In press (Doi: 10.1111/j.1502-3931.2011.00262.x).
10. Cascales-Miñana, B, Muñoz-Bertomeu, J, Ros, R and Segura, J. 2010. Trends and patterns in the evolution of vascular plants: macroevolutionary implications of a multilevel taxonomic analysis. Lethaia, 43(4): 545-557.
11. Clapham, ME, Shen, SZ and Bottjer, DJ. 2009. The double mass extinction revisited: reassessing the severity, selectivity, and causes of the end-Guadalupian biotic crisis (Late Permian). Paleobiology, 35(1): 32-50.
12. Cleal, CJ. 1993. "Plants. 44. Gymnospermophyta". In The fossil record 2, Edited by: Benton, MJ. 795-808. London: Chapman and Hall.
13. Cleal, CJ and Shute, CH. 2003. Systematics of the Late Carboniferous medullosalean pteridosperm Laveineopteris and its associated Cyclopteris leaves. Palaeontology, 46: 353-411.
14. Cleal, CJ and Thomas, BA. 1999. Plant fossils: the history of land vegetation, 128Woodbridge: The Boydell Press.
15. Contreras-Medina, R, Morrone, JJ and Vega, IL. 2001. Biogeographic methods identify gymnosperm biodiversity hotspots. Naturwissenschaften, 88(10): 427-430.
16. Doyle, JA. 2006. Seed ferns and the origin of angiosperms. J Torrey Bot Soc, 133(1): 169-209.
17. Farjon A. 2003. The remaining diversity of conifers. Paper presented at Proceedings of the Fourth International Conifer Conference-Conifers for the Future? Leuven 1: International Society Horticultural Science.
18. Finnegan, S, Payne, JL and Wang, SC. 2008. The Red Queen revisited: reevaluating the age selectivity of Phanerozoic marine genus extinctions. Paleobiology, 34(3): 318-341.
19. Fitzgerald, PC and Carlson, SJ. 2006. Examining the latitudinal diversity gradient in Paleozoic terebratulide brachiopods: should singleton data be removed?. Paleobiology, 32(3): 367-386.
20. Foote, M. 2000a. Origination and extinction components of taxonomic diversity: general problems. Paleobiology, 26(4): 74-102.
21. Foote, M. 2000b. Origination and extinction components of taxonomic diversity: Paleozoic and post-Paleozoic dynamics. Paleobiology, 26(4): 578-605.
22. Foote, M. 2003. Origination and extinction through the Phanerozoic: a new approach. J Geol, 111(2): 125-148.
23. Foote, M. 2007. Extinction and quiescence in marine animal genera. Paleobiology, 33(2): 261-272.
24. Fröbisch, J. 2008. Global taxonomic diversity of anomodonts (Tetrapoda, Therapsida) and the terrestrial rock record across the Permian-Triassic boundary. PLoS ONE, 3(11): e3733
25. Guo, FL, Hu, SY, Xu, SX and Yuan, ZF. 2000. Cytological mechanism of cytoplasmic inheritance in Pinus tabulaeformis. II. Transmission of male and female organelles during fertilization and proembryo development. Acta Bot Sin, 42(4): 341-352.
26. Guo, FL, Hu, SY, Yuan, ZF, Zee, SY and Han, YZ. 2005. Paternal cytoplasmic transmission in Chinese pine (Pinustabulaeformis). Protoplasma, 225(1-2): 5-14.
27. Harris, TM. 1964. The Yorkshire Jurassic Flora. II. Caytoniales, Cycadales and pteridosperms, 191London: British Museum (Natural History).
28. Harris, TM. 1969. The Yorkshire Jurassic Flora. III. Bennettitales, 191London: British Museum (Natural History).
29. Harris, TM. 1974. The Yorkshire Jurassic Flora. IV. Ginkgoales and Czekanowskiales, 78London: British Museum (Natural History).
30. Hilton, J and Bateman, RM. 2006. Pteridosperms are the backbone of seed-plant phylogeny. J Torrey Bot Soc, 133(1): 119-168.
31. Kaminski, MA, Setoyama, E and Cetean, CG. 2010. The Phanerozoic diversity of agglutinated foraminifera: origination and extinction rates. Acta Palaeontol Pol, 55(3): 529-539.
32. Kidwell, SM. 1997. Time-averaging in the marine fossil record: overview of strategies and uncertainties. Geobios, 30(7): 977-995.
33. Kiessling, W and Baron-Szabo, RC. 2004. Extinction and recovery patterns of scleractinian corals at the Cretaceous-tertiary boundary. Palaeogeogr Palaeocl Palaeoecol, 214: 195-223.
34. Kiessling, W, Aberhan, M, Brenneis, B and Wagner, PJ. 2007. Extinction trajectories of benthic organisms across the Triassic-Jurassic boundary. Palaeogeogr Palaeocl Palaeoecol, 244(1-4): 201-222.
35. Knoll, AH. 1984. "Patterns of extinction in the fossil record of vascular plants". In Extinctions, Edited by: Nitecki, MH. 21-68. Chicago, IL: University of Chicago Press.
36. Knoll, AH and Niklas, KJ. 1987. Adaptation, plant evolution, and the fossil record. Rev Palaeobot Palynol, 50(1-2): 127-149.
37. Knoll, AH, Niklas, KJ, Gensel, PG and Tiffney, BH. 1984. Character diversification and patterns of evolution in early vascular plants. Paleobiology, 10(1): 34-47.
38. Kowalewski, M, Goodfriend, GA and Flessa, KW. 1998. High-resolution estimates of temporal mixing within shell beds: the evils and virtues of time-averaging. Paleobiology, 24(3): 287-304.
39. Kriwet, J and Benton, MJ. 2004. Neoselachian (Chondrichthyes, Elasmobranchii) diversity across the Cretaceous-tertiary boundary. Palaeogeogr Palaeocl Palaeoecol, 214: 181-194.
40. Krug, AZ and Patzkowsky, ME. 2004. Rapid recovery from the Late Ordovician mass extinction. Proc Natl Acad Sci USA, 101(51): 17605-17610.
41. Kunzmann, L. 2007. Araucariaceae (Pinopsida): aspects in palaeobiogeography and palaeobiodiversity in the Mesozoic. Zoologischer Anz, 246(4): 257-277.
42. Leslie, AB. 2010. Flotation preferentially selects saccate pollen during conifer pollination. New Phytol, 188(1): 273-279.
43. Lev-Yadun, S and Sederoff, R. 2000. Pines as model gymnosperms to study evolution, wood formation, and perennial growth. J Plant Growth Regul, 19(3): 290-305.
44. Liow, LH, Fortelius, M, Bingham, E, Lintulaakso, K, Mannila, H, Flynn, L and Stenseth, NC. 2008. Higher origination and extinction rates in larger mammals. Proc Natl Acad Sci USA, 105(16): 6097-6102.
45. Naugolnykh, SV. 2007. Foliar seed-bearing organs of Paleozoic Ginkgophytes and the early evolution of the Ginkgoales. Paleontol J, 41(8): 815-859.
46. Niklas, KJ. 1988. Patterns of vascular plant diversification in the fossil record-proof and conjecture. Ann Mo Bot Garden, 75(1): 35-54.
47. Niklas, KJ and Tiffney, BH. 1994. The quantification of plant biodiversity through time. Philos Trans R Soc Lond Ser B-Biol Sci, 345(1311): 35-44.
48. Niklas, KJ, Tiffney, BH and Knoll, AH. 1980. Apparent changes in the diversity of fossil plants. Evol Biol, 12: 1-89.
49. Niklas, KJ, Tiffney, BH and Knoll, AH. 1983. Patterns in vascular land plant diversification. Nature, 303(5918): 614-616.
50. Niklas, KJ, Tiffney, BH and Knoll, AH. 1985. "Patterns in vascular land plant diversification: an analysis at the specie level". In Phanerozoic diversity patterns: profiles in macroevolution, Edited by: Valentine, JW. 97-128. Princeton, NJ: Princeton University Press.
51. Olszewski, T. 1999. Taking advantage of time-averaging. Paleobiology, 25(2): 226-238.
52. Olszewski, TD. 2004. Modeling the influence of taphonomic destruction, reworking, and burial on time-averaging in fossil accumulations. Palaios, 19(1): 39-50.
53. Peters, SE and Foote, M. 2001. Biodiversity in the Phanerozoic: a reinterpretation. Paleobiology, 27(4): 583-601.
54. Peters, SE and Foote, M. 2002. Determinants of extinction in the fossil record. Nature, 416(6879): 420-424.
55. Peters, SE and Heim, NA. 2010. The geological completeness of paleontological sampling in North America. Paleobiology, 36(1): 61-79.
56. Pichot, C, Borrut, A and El Maataoui, M. 1998. Unexpected DNA content in the endosperm of Cupressus dupreziana A. Camus seeds and its implications in the reproductive process. Sex Plant Reprod, 11(3): 148-152.
57. Pichot, C and El Maataoui, M. 2000. Unreduced diploid nuclei in Cupressus dupreziana A. Camus pollen. Theor Appl Genet, 101(4): 574-579.
58. Raup, DM. 1972. Taxonomic diversity during the Phanerozoic. Science, 117: 1065-1071.
59. Raup, DM. 1975. Taxonomic survivorship curves and Van Valen's Law. Paleobiology, 1: 82-96.
60. Raup, DM. 1976a. Species diversity in the Phanerozoic: a tabulation. Paleobiology, 2: 279-288.
61. Raup, DM. 1976b. Species diversity in the Phanerozoic: an interpretation. Paleobiology, 2: 289-297.
62. Richardson, DM and Rejmanek, M. 2004. Conifers as invasive aliens: a global survey and predictive framework. Divers Distributions, 10(5-6): 321-331.
63. Rothwell, GW and Scheckler, SE. 1988. "Biology of ancestral gymnosperms". In Origin and evolution of the gymnosperms, Edited by: Beck, CB. 85-134. New York: Columbia University Press.
64. Rydin, C and Kallersjo, M. 2002. Taxon sampling and seed plant phylogeny. Cladistics Int J Willi Hennig Soc, 18(5): 485-513.
65. Rydin, C, Pedersen, KR and Friis, EM. 2004. On the evolutionary history of Ephedra: Cretaceous fossils and extant molecules. Proc Natl Acad Sci USA, 101(47): 16571-16576.
66. Sepkoski, JJ. 1978. A kinetic-model of Phanerozoic taxonomic diversity I. Analysis of marine orders. Paleobiology, 4(3): 223-251.
67. Simpson, C and Harnik, PG. 2009. Assessing the role of abundance in marine bivalve extinction over the post-Paleozoic. Paleobiology, 35(4): 631-647.
68. Soltis, DE, Soltis, PS and Zanis, MJ. 2002. Phylogeny of seed plants based on evidence from eight genes. Am J Bot, 89(10): 1670-1681.
69. Stewart, WN and Rothwell, GW. 1993. Paleobotany and the evolution of plants, 521Cambridge: Cambridge University Press.
70. Taylor, TN and Taylor, EL. 1993. The biology and evolution of fossil plants, 1st ed, 982Englewood Cliffs, NJ: Prentice-Hall.
71. Tomašových, A and Kidwell, SM. 2009. Fidelity of variation in species composition and diversity partitioning by death assemblages: time-averaging transfers diversity from beta to alpha levels. Paleobiology, 35(1): 94-118.
72. Tomašových, A and Kidwell, SM. 2010a. The effects of temporal resolution on species turnover and on testing metacommunity models. Am Nat, 175(5): 587-606.
73. Tomašových, A and Kidwell, SM. 2010b. Predicting the effects of increasing temporal scale on species composition, diversity, and rank-abundance distributions. Paleobiology, 36(4): 672-695.
74. Vakhrameev, VA. 1991. Jurassic and Cretaceous floras and climates of the earth, 318Cambridge: Cambridge University Press.
75. Valentine, JW. 1969. Patterns of taxonomic ecologic structure of the shelf benthos during Phanerozoic time. Palaeontology, 12: 684-709.
76. Valentine, JW. 1970. How many marine invertebrate fossil species? A new approximation. J Paleontol, 44: 410-415.
77. Wall, PD, Ivany, LC and Wilkinson, BH. 2009. Revisiting Raup: exploring the influence of outcrop area on diversity in light of modern sample-standardization techniques. Paleobiology, 35(1): 146-167.
78. Wang, SC and Everson, PJ. 2007. Confidence intervals for pulsed mass extinction events. Paleobiology, 33(2): 324-336.
79. Wang, ZQ. 2004. A new Permian gnetalean cone as fossil evidence for supporting current molecular phylogeny. Ann Bot, 94(2): 281-288.
80. Wilf, P and Johnson, KR. 2004. Land plant extinction at the end of the Cretaceous: a quantitative analysis of the North Dakota megafloral record. Paleobiology, 30(3): 347-368.
81. Won, H and Renner, SS. 2006. Dating dispersal and radiation in the gymnosperm Gnetum (Gnetales)-Clock calibration when outgroup relationships are uncertain. Syst Biol, 55: 610-622.
82. Yao, YF, Xi, YZ, Geng, BY and Li, CS. 2004. The exine ultrastructure of pollen grains in Gnetum (Gnetaceae) from China and its bearing on the relationship with the ANITA Group. Bot J Linnean Soc, 146(4): 415-425.