메뉴 건너뛰기




Volumn 7, Issue 3, 2012, Pages

Comparative analysis of gene content evolution in phytoplasmas and mycoplasmas

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL METABOLISM; COMPARATIVE STUDY; CONTROLLED STUDY; GENE CONTENT; GENE FUNCTION; GENE INTERACTION; GENE SEQUENCE; GENETIC PARAMETERS; GENOME ANALYSIS; GENOME SIZE; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; MOLLICUTES; MYCOPLASMA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYTOPLASMA; SEQUENCE ALIGNMENT; BACTERIAL GENOME; GENETICS; PHYLOGENY;

EID: 84858978654     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0034407     Document Type: Article
Times cited : (41)

References (72)
  • 2
    • 0031770391 scopus 로고    scopus 로고
    • Molecular biology and pathogenicity of mycoplasmas
    • Razin S, Yogev D, Naot Y, (1998) Molecular biology and pathogenicity of mycoplasmas. Microbiol Mol Biol Rev 62: 1094-1156.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1094-1156
    • Razin, S.1    Yogev, D.2    Naot, Y.3
  • 5
    • 80255138167 scopus 로고    scopus 로고
    • Phytoplasmas: a century of pioneering research
    • Namba S, (2011) Phytoplasmas: a century of pioneering research. J Gen Plant Pathol 77: 345-349.
    • (2011) J Gen Plant Pathol , vol.77 , pp. 345-349
    • Namba, S.1
  • 6
    • 55649110049 scopus 로고    scopus 로고
    • A simple, fast, and accurate method of phylogenomic inference
    • Wu M, Eisen J, (2008) A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9: R151.
    • (2008) Genome Biol , vol.9
    • Wu, M.1    Eisen, J.2
  • 7
    • 72949101201 scopus 로고    scopus 로고
    • A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
    • Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, et al. (2009) A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462: 1056-1060.
    • (2009) Nature , vol.462 , pp. 1056-1060
    • Wu, D.1    Hugenholtz, P.2    Mavromatis, K.3    Pukall, R.4    Dalin, E.5
  • 8
    • 33644847226 scopus 로고    scopus 로고
    • Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
    • Bai X, Zhang J, Ewing A, Miller SA, Radek AJ, et al. (2006) Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol 188: 3682-3696.
    • (2006) J Bacteriol , vol.188 , pp. 3682-3696
    • Bai, X.1    Zhang, J.2    Ewing, A.3    Miller, S.A.4    Radek, A.J.5
  • 9
    • 9144247750 scopus 로고    scopus 로고
    • Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma
    • Oshima K, Kakizawa S, Nishigawa H, Jung HY, Wei W, et al. (2004) Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nature Genet 36: 27-29.
    • (2004) Nature Genet , vol.36 , pp. 27-29
    • Oshima, K.1    Kakizawa, S.2    Nishigawa, H.3    Jung, H.Y.4    Wei, W.5
  • 10
    • 44349099865 scopus 로고    scopus 로고
    • Comparative genome analysis of "Candidatus Phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M and AY-WB
    • Tran-Nguyen LTT, Kube M, Schneider B, Reinhardt R, Gibb KS, (2008) Comparative genome analysis of "Candidatus Phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M and AY-WB. J Bacteriol 190: 3979-3991.
    • (2008) J Bacteriol , vol.190 , pp. 3979-3991
    • Tran-Nguyen, L.T.T.1    Kube, M.2    Schneider, B.3    Reinhardt, R.4    Gibb, K.S.5
  • 11
    • 47249123775 scopus 로고    scopus 로고
    • The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'
    • Kube M, Schneider B, Kuhl H, Dandekar T, Heitmann K, et al. (2008) The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'. BMC Genomics 9: 306.
    • (2008) BMC Genomics , vol.9 , pp. 306
    • Kube, M.1    Schneider, B.2    Kuhl, H.3    Dandekar, T.4    Heitmann, K.5
  • 12
    • 77349083975 scopus 로고    scopus 로고
    • Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity
    • Nouvel LX, Sirand-Pugnet P, Marenda MS, Sagne E, Barbe V, et al. (2010) Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics 11: 86.
    • (2010) BMC Genomics , vol.11 , pp. 86
    • Nouvel, L.X.1    Sirand-Pugnet, P.2    Marenda, M.S.3    Sagne, E.4    Barbe, V.5
  • 15
    • 1242296870 scopus 로고    scopus 로고
    • The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)
    • Westberg J, Persson A, Holmberg A, Goesmann A, Lundeberg J, et al. (2004) The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). Genome Res 14: 221-227.
    • (2004) Genome Res , vol.14 , pp. 221-227
    • Westberg, J.1    Persson, A.2    Holmberg, A.3    Goesmann, A.4    Lundeberg, J.5
  • 17
    • 12744261097 scopus 로고    scopus 로고
    • First steps towards the genetic manipulation of Mycoplasma agalactiae and Mycoplasma bovis using the transposon Tn4001mod
    • Chopra-Dewasthaly R, Zimmermann M, Rosengarten R, Citti C, (2005) First steps towards the genetic manipulation of Mycoplasma agalactiae and Mycoplasma bovis using the transposon Tn4001mod. Int J Med Microbiol 294: 447-453.
    • (2005) Int J Med Microbiol , vol.294 , pp. 447-453
    • Chopra-Dewasthaly, R.1    Zimmermann, M.2    Rosengarten, R.3    Citti, C.4
  • 18
    • 4344657077 scopus 로고    scopus 로고
    • Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects
    • IRPCM Phytoplasma/Spiroplasma Working Team - Phytoplasma taxonomy group
    • IRPCM Phytoplasma/Spiroplasma Working Team- Phytoplasma taxonomy group (2004) 'Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects. Int J Syst Evol Microbiol 54: 1243-1255.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1243-1255
  • 19
    • 67749120844 scopus 로고    scopus 로고
    • Phytoplasma research begins to bloom
    • Strauss E, (2009) Phytoplasma research begins to bloom. Science 325: 388-390.
    • (2009) Science , vol.325 , pp. 388-390
    • Strauss, E.1
  • 21
    • 77956638182 scopus 로고    scopus 로고
    • Phytoplasma genomics, from sequencing to comparative and functional genomics - what have we learnt?
    • In: Weintraub PG, Jones P, editors, Oxfordshire, CABI
    • Hogenhout SA, Seruga Music M, (2009) Phytoplasma genomics, from sequencing to comparative and functional genomics- what have we learnt? In: Weintraub PG, Jones P, editors. Phytoplasmas: genomes, plant hosts and vectors Oxfordshire CABI pp. 19-36.
    • (2009) Phytoplasmas: Genomes, Plant Hosts and Vectors , pp. 19-36
    • Hogenhout, S.A.1    Seruga Music, M.2
  • 23
    • 42549143433 scopus 로고    scopus 로고
    • Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria
    • Kuo CH, Kissinger J, (2008) Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria. BMC Evol Biol 8: 108.
    • (2008) BMC Evol Biol , vol.8 , pp. 108
    • Kuo, C.H.1    Kissinger, J.2
  • 24
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
    • (2009) PLoS Genet , vol.5
    • Touchon, M.1    Hoede, C.2    Tenaillon, O.3    Barbe, V.4    Baeriswyl, S.5
  • 25
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the gram-positive bacterium Bacillus subtilis
    • Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390: 249-256.
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1    Ogasawara, N.2    Moszer, I.3    Albertini, A.M.4    Alloni, G.5
  • 27
    • 41149164162 scopus 로고    scopus 로고
    • The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features
    • Seedorf H, Fricke WF, Veith B, Bruggemann H, Liesegang H, et al. (2008) The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features. Proc Natl Acad Sci U S A 105: 2128-2133.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 2128-2133
    • Seedorf, H.1    Fricke, W.F.2    Veith, B.3    Bruggemann, H.4    Liesegang, H.5
  • 28
    • 40449133247 scopus 로고    scopus 로고
    • The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota
    • Kosaka T, Kato S, Shimoyama T, Ishii S, Abe T, et al. (2008) The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota. Genome Res 18: 442-448.
    • (2008) Genome Res , vol.18 , pp. 442-448
    • Kosaka, T.1    Kato, S.2    Shimoyama, T.3    Ishii, S.4    Abe, T.5
  • 29
    • 84908087962 scopus 로고    scopus 로고
    • A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
    • Florez LA, Roppel SF, Schmeisky AG, Lammers CR, Stulke J, (2009) A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. Database 2009.
    • (2009) Database , vol.2009
    • Florez, L.A.1    Roppel, S.F.2    Schmeisky, A.G.3    Lammers, C.R.4    Stulke, J.5
  • 30
    • 77749280244 scopus 로고    scopus 로고
    • Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis
    • Lammers CR, Florez LA, Schmeisky AG, Roppel SF, Mader U, et al. (2010) Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis. Microbiology 156: 849-859.
    • (2010) Microbiology , vol.156 , pp. 849-859
    • Lammers, C.R.1    Florez, L.A.2    Schmeisky, A.G.3    Roppel, S.F.4    Mader, U.5
  • 31
    • 0028048566 scopus 로고
    • Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification
    • Gundersen DE, Lee IM, Rehner SA, Davis RE, Kingsbury DT, (1994) Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification. J Bacteriol 176: 5244-5254.
    • (1994) J Bacteriol , vol.176 , pp. 5244-5254
    • Gundersen, D.E.1    Lee, I.M.2    Rehner, S.A.3    Davis, R.E.4    Kingsbury, D.T.5
  • 32
  • 33
    • 77954678430 scopus 로고    scopus 로고
    • Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis
    • Hoelzle K, Peter S, Sidler M, Kramer MM, Wittenbrink MM, et al. (2010) Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis. BMC Microbiol 10: 194.
    • (2010) BMC Microbiol , vol.10 , pp. 194
    • Hoelzle, K.1    Peter, S.2    Sidler, M.3    Kramer, M.M.4    Wittenbrink, M.M.5
  • 34
    • 58449125407 scopus 로고    scopus 로고
    • Genomics and evolution of heritable bacterial symbionts
    • Moran NA, McCutcheon JP, Nakabachi A, (2008) Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet 42: 165-190.
    • (2008) Annu Rev Genet , vol.42 , pp. 165-190
    • Moran, N.A.1    McCutcheon, J.P.2    Nakabachi, A.3
  • 35
    • 79961165989 scopus 로고    scopus 로고
    • Effector proteins that modulate plant-insect interactions
    • Hogenhout SA, Bos JI, (2011) Effector proteins that modulate plant-insect interactions. Curr Opin Plant Biol 14: 422-428.
    • (2011) Curr Opin Plant Biol , vol.14 , pp. 422-428
    • Hogenhout, S.A.1    Bos, J.I.2
  • 36
    • 80051758808 scopus 로고    scopus 로고
    • Diverse targets of phytoplasma effectors: from plant development to defense against insects
    • Sugio A, MacLean AM, Kingdom HN, Grieve VM, Manimekalai R, et al. (2011) Diverse targets of phytoplasma effectors: from plant development to defense against insects. Annu Rev Phytopathol 49: 175-195.
    • (2011) Annu Rev Phytopathol , vol.49 , pp. 175-195
    • Sugio, A.1    MacLean, A.M.2    Kingdom, H.N.3    Grieve, V.M.4    Manimekalai, R.5
  • 38
    • 50149119906 scopus 로고    scopus 로고
    • Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution
    • Wei W, Davis RE, Jomantiene R, Zhao Y, (2008) Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution. Proc Natl Acad Sci U S A 105: 11827-11832.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 11827-11832
    • Wei, W.1    Davis, R.E.2    Jomantiene, R.3    Zhao, Y.4
  • 39
    • 2342621395 scopus 로고    scopus 로고
    • NorM, an Erwinia amylovora multidrug efflux pump involved in in vitro competition with other epiphytic bacteria
    • Burse A, Weingart H, Ullrich MS, (2004) NorM, an Erwinia amylovora multidrug efflux pump involved in in vitro competition with other epiphytic bacteria. Appl Environ Microbiol 70: 693-703.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 693-703
    • Burse, A.1    Weingart, H.2    Ullrich, M.S.3
  • 40
    • 0031984440 scopus 로고    scopus 로고
    • Bacterial preprotein translocase: mechanism and conformational dynamics of a processive enzyme
    • Economou A, (1998) Bacterial preprotein translocase: mechanism and conformational dynamics of a processive enzyme. Mol Microbiol 27: 511-518.
    • (1998) Mol Microbiol , vol.27 , pp. 511-518
    • Economou, A.1
  • 41
    • 0033782994 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthesis
    • Ibba M, Soll D, (2000) Aminoacyl-tRNA synthesis. Annu Rev Biochem 69: 617-650.
    • (2000) Annu Rev Biochem , vol.69 , pp. 617-650
    • Ibba, M.1    Soll, D.2
  • 42
    • 41849117355 scopus 로고    scopus 로고
    • From one amino acid to another: tRNA-dependent amino acid biosynthesis
    • Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, et al. (2008) From one amino acid to another: tRNA-dependent amino acid biosynthesis. Nucl Acids Res 36: 1813-1825.
    • (2008) Nucl Acids Res , vol.36 , pp. 1813-1825
    • Sheppard, K.1    Yuan, J.2    Hohn, M.J.3    Jester, B.4    Devine, K.M.5
  • 43
    • 6044238249 scopus 로고    scopus 로고
    • The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis
    • Minion FC, Lefkowitz EJ, Madsen ML, Cleary BJ, Swartzell SM, et al. (2004) The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis. J Bacteriol 186: 7123-7133.
    • (2004) J Bacteriol , vol.186 , pp. 7123-7133
    • Minion, F.C.1    Lefkowitz, E.J.2    Madsen, M.L.3    Cleary, B.J.4    Swartzell, S.M.5
  • 45
    • 0029813420 scopus 로고    scopus 로고
    • the minimal cell genome: "On being the right size"
    • Maniloff J, (1996) the minimal cell genome: "On being the right size". Proc Natl Acad Sci U S A 93: 10004-10006.
    • (1996) Proc Natl Acad Sci U S A , vol.93 , pp. 10004-10006
    • Maniloff, J.1
  • 46
    • 58149492429 scopus 로고    scopus 로고
    • Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes
    • Novichkov PS, Wolf YI, Dubchak I, Koonin EV, (2009) Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 191: 65-73.
    • (2009) J Bacteriol , vol.191 , pp. 65-73
    • Novichkov, P.S.1    Wolf, Y.I.2    Dubchak, I.3    Koonin, E.V.4
  • 47
    • 68149175229 scopus 로고    scopus 로고
    • The consequences of genetic drift for bacterial genome complexity
    • Kuo CH, Moran NA, Ochman H, (2009) The consequences of genetic drift for bacterial genome complexity. Genome Res 19: 1450-1454.
    • (2009) Genome Res , vol.19 , pp. 1450-1454
    • Kuo, C.H.1    Moran, N.A.2    Ochman, H.3
  • 48
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira A, Ochman H, Moran NA, (2001) Deletional bias and the evolution of bacterial genomes. Trends Genet 17: 589-596.
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 50
    • 70849114722 scopus 로고    scopus 로고
    • Deletional bias across the three domains of life
    • Kuo CH, Ochman H, (2009) Deletional bias across the three domains of life. Genome Biol Evol 1: 145-152.
    • (2009) Genome Biol Evol , vol.1 , pp. 145-152
    • Kuo, C.H.1    Ochman, H.2
  • 51
    • 77957343695 scopus 로고    scopus 로고
    • The extinction dynamics of bacterial pseudogenes
    • Kuo CH, Ochman H, (2010) The extinction dynamics of bacterial pseudogenes. PLoS Genet 6: e1001050.
    • (2010) PLoS Genet , vol.6
    • Kuo, C.H.1    Ochman, H.2
  • 52
    • 2942553890 scopus 로고    scopus 로고
    • Comparative genomics identifies genes shared by distantly related insect-transmitted plant pathogenic mollicutes
    • Bai X, Zhang J, Holford IR, Hogenhout SA, (2004) Comparative genomics identifies genes shared by distantly related insect-transmitted plant pathogenic mollicutes. FEMS Microbiol Lett 235: 249-258.
    • (2004) FEMS Microbiol Lett , vol.235 , pp. 249-258
    • Bai, X.1    Zhang, J.2    Holford, I.R.3    Hogenhout, S.A.4
  • 54
    • 80053583742 scopus 로고    scopus 로고
    • Phytoplasma effector SAP54 induces indeterminate leaf-like flower development in Arabidopsis plants
    • Maclean AM, Sugio A, Makarova OV, Findlay KC, Grieve VM, et al. (2011) Phytoplasma effector SAP54 induces indeterminate leaf-like flower development in Arabidopsis plants. Plant Physiol 157: 831-841.
    • (2011) Plant Physiol , vol.157 , pp. 831-841
    • Maclean, A.M.1    Sugio, A.2    Makarova, O.V.3    Findlay, K.C.4    Grieve, V.M.5
  • 58
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ, Roos DS, (2003) OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 59
    • 33745022802 scopus 로고    scopus 로고
    • Benchmarking ortholog identification methods using functional genomics data
    • Hulsen T, Huynen M, de Vlieg J, Groenen P, (2006) Benchmarking ortholog identification methods using functional genomics data. Genome Biol 7: R31.
    • (2006) Genome Biol , vol.7
    • Hulsen, T.1    Huynen, M.2    de Vlieg, J.3    Groenen, P.4
  • 61
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792-1797.
    • (2004) Nucl Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 62
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 63
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package (version 3.2)
    • Felsenstein J, (1989) PHYLIP- Phylogeny inference package (version 3.2). Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 64
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 65
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F, (2004) Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 67
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M, Goto S, (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucl Acids Res 28: 27-30.
    • (2000) Nucl Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 68
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucl Acids Res 38: D355-360.
    • (2010) Nucl Acids Res , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 69
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ, (1997) A genomic perspective on protein families. Science 278: 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 71
    • 0346494849 scopus 로고    scopus 로고
    • MolliGen, a database dedicated to the comparative genomics of Mollicutes
    • Barre A, de Daruvar A, Blanchard A, (2004) MolliGen, a database dedicated to the comparative genomics of Mollicutes. Nucleic Acids Res 32: D307-310.
    • (2004) Nucleic Acids Res , vol.32
    • Barre, A.1    de Daruvar, A.2    Blanchard, A.3
  • 72
    • 75549090505 scopus 로고    scopus 로고
    • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
    • Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, et al. (2010) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucl Acids Res 38 (suppl 1): D473-D479.
    • (2010) Nucl Acids Res , vol.38 , Issue.SUPPL. 1
    • Caspi, R.1    Altman, T.2    Dale, J.M.3    Dreher, K.4    Fulcher, C.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.