-
2
-
-
0031770391
-
Molecular biology and pathogenicity of mycoplasmas
-
Razin S, Yogev D, Naot Y, (1998) Molecular biology and pathogenicity of mycoplasmas. Microbiol Mol Biol Rev 62: 1094-1156.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 1094-1156
-
-
Razin, S.1
Yogev, D.2
Naot, Y.3
-
4
-
-
45149128856
-
Phytoplasmas: bacteria that manipulate plants and insects
-
Hogenhout SA, Oshima K, Ammar ED, Kakizawa S, Kingdom HN, et al. (2008) Phytoplasmas: bacteria that manipulate plants and insects. Mol Plant Pathol 9: 403-423.
-
(2008)
Mol Plant Pathol
, vol.9
, pp. 403-423
-
-
Hogenhout, S.A.1
Oshima, K.2
Ammar, E.D.3
Kakizawa, S.4
Kingdom, H.N.5
-
5
-
-
80255138167
-
Phytoplasmas: a century of pioneering research
-
Namba S, (2011) Phytoplasmas: a century of pioneering research. J Gen Plant Pathol 77: 345-349.
-
(2011)
J Gen Plant Pathol
, vol.77
, pp. 345-349
-
-
Namba, S.1
-
6
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu M, Eisen J, (2008) A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9: R151.
-
(2008)
Genome Biol
, vol.9
-
-
Wu, M.1
Eisen, J.2
-
7
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, et al. (2009) A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 462: 1056-1060.
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
-
8
-
-
33644847226
-
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
-
Bai X, Zhang J, Ewing A, Miller SA, Radek AJ, et al. (2006) Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol 188: 3682-3696.
-
(2006)
J Bacteriol
, vol.188
, pp. 3682-3696
-
-
Bai, X.1
Zhang, J.2
Ewing, A.3
Miller, S.A.4
Radek, A.J.5
-
9
-
-
9144247750
-
Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma
-
Oshima K, Kakizawa S, Nishigawa H, Jung HY, Wei W, et al. (2004) Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nature Genet 36: 27-29.
-
(2004)
Nature Genet
, vol.36
, pp. 27-29
-
-
Oshima, K.1
Kakizawa, S.2
Nishigawa, H.3
Jung, H.Y.4
Wei, W.5
-
10
-
-
44349099865
-
Comparative genome analysis of "Candidatus Phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M and AY-WB
-
Tran-Nguyen LTT, Kube M, Schneider B, Reinhardt R, Gibb KS, (2008) Comparative genome analysis of "Candidatus Phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" strains OY-M and AY-WB. J Bacteriol 190: 3979-3991.
-
(2008)
J Bacteriol
, vol.190
, pp. 3979-3991
-
-
Tran-Nguyen, L.T.T.1
Kube, M.2
Schneider, B.3
Reinhardt, R.4
Gibb, K.S.5
-
11
-
-
47249123775
-
The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'
-
Kube M, Schneider B, Kuhl H, Dandekar T, Heitmann K, et al. (2008) The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'. BMC Genomics 9: 306.
-
(2008)
BMC Genomics
, vol.9
, pp. 306
-
-
Kube, M.1
Schneider, B.2
Kuhl, H.3
Dandekar, T.4
Heitmann, K.5
-
12
-
-
77349083975
-
Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity
-
Nouvel LX, Sirand-Pugnet P, Marenda MS, Sagne E, Barbe V, et al. (2010) Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics 11: 86.
-
(2010)
BMC Genomics
, vol.11
, pp. 86
-
-
Nouvel, L.X.1
Sirand-Pugnet, P.2
Marenda, M.S.3
Sagne, E.4
Barbe, V.5
-
13
-
-
4444350869
-
The complete genome and proteome of Mycoplasma mobile
-
Jaffe JD, Stange-Thomann N, Smith C, DeCaprio D, Fisher S, et al. (2004) The complete genome and proteome of Mycoplasma mobile. Genome Res 14: 1447-1461.
-
(2004)
Genome Res
, vol.14
, pp. 1447-1461
-
-
Jaffe, J.D.1
Stange-Thomann, N.2
Smith, C.3
DeCaprio, D.4
Fisher, S.5
-
14
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science 270: 397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
-
15
-
-
1242296870
-
The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)
-
Westberg J, Persson A, Holmberg A, Goesmann A, Lundeberg J, et al. (2004) The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). Genome Res 14: 221-227.
-
(2004)
Genome Res
, vol.14
, pp. 221-227
-
-
Westberg, J.1
Persson, A.2
Holmberg, A.3
Goesmann, A.4
Lundeberg, J.5
-
16
-
-
0025071359
-
Evolutionary changes in the genetic code
-
Osawa S, Muto A, Jukes TH, Ohama T, (1990) Evolutionary changes in the genetic code. Proc Biol Sci 241: 19-28.
-
(1990)
Proc Biol Sci
, vol.241
, pp. 19-28
-
-
Osawa, S.1
Muto, A.2
Jukes, T.H.3
Ohama, T.4
-
17
-
-
12744261097
-
First steps towards the genetic manipulation of Mycoplasma agalactiae and Mycoplasma bovis using the transposon Tn4001mod
-
Chopra-Dewasthaly R, Zimmermann M, Rosengarten R, Citti C, (2005) First steps towards the genetic manipulation of Mycoplasma agalactiae and Mycoplasma bovis using the transposon Tn4001mod. Int J Med Microbiol 294: 447-453.
-
(2005)
Int J Med Microbiol
, vol.294
, pp. 447-453
-
-
Chopra-Dewasthaly, R.1
Zimmermann, M.2
Rosengarten, R.3
Citti, C.4
-
18
-
-
4344657077
-
Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects
-
IRPCM Phytoplasma/Spiroplasma Working Team - Phytoplasma taxonomy group
-
IRPCM Phytoplasma/Spiroplasma Working Team- Phytoplasma taxonomy group (2004) 'Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects. Int J Syst Evol Microbiol 54: 1243-1255.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1243-1255
-
-
-
19
-
-
67749120844
-
Phytoplasma research begins to bloom
-
Strauss E, (2009) Phytoplasma research begins to bloom. Science 325: 388-390.
-
(2009)
Science
, vol.325
, pp. 388-390
-
-
Strauss, E.1
-
20
-
-
34848908324
-
In search of essentiality: Mollicute-specific genes shared by twelve genomes
-
Souza RC, Almeida DF, Zaha A, Morais DA, Vasconcelos ATR, (2007) In search of essentiality: Mollicute-specific genes shared by twelve genomes. Genet Mol Biol 30: 169-173.
-
(2007)
Genet Mol Biol
, vol.30
, pp. 169-173
-
-
Souza, R.C.1
Almeida, D.F.2
Zaha, A.3
Morais, D.A.4
Vasconcelos, A.T.R.5
-
21
-
-
77956638182
-
Phytoplasma genomics, from sequencing to comparative and functional genomics - what have we learnt?
-
In: Weintraub PG, Jones P, editors, Oxfordshire, CABI
-
Hogenhout SA, Seruga Music M, (2009) Phytoplasma genomics, from sequencing to comparative and functional genomics- what have we learnt? In: Weintraub PG, Jones P, editors. Phytoplasmas: genomes, plant hosts and vectors Oxfordshire CABI pp. 19-36.
-
(2009)
Phytoplasmas: Genomes, Plant Hosts and Vectors
, pp. 19-36
-
-
Hogenhout, S.A.1
Seruga Music, M.2
-
22
-
-
3042840997
-
Computational inference of scenarios for alpha-proteobacterial genome evolution
-
Boussau B, Karlberg EO, Frank AC, Legault BA, Andersson SG, (2004) Computational inference of scenarios for alpha-proteobacterial genome evolution. Proc Natl Acad Sci U S A 101: 9722-9727.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 9722-9727
-
-
Boussau, B.1
Karlberg, E.O.2
Frank, A.C.3
Legault, B.A.4
Andersson, S.G.5
-
23
-
-
42549143433
-
Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria
-
Kuo CH, Kissinger J, (2008) Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria. BMC Evol Biol 8: 108.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 108
-
-
Kuo, C.H.1
Kissinger, J.2
-
24
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
-
25
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, et al. (1997) The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390: 249-256.
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
-
26
-
-
0037452621
-
Complete genome sequence of Lactobacillus plantarum WCFS1
-
Kleerebezem M, Boekhorst J, van Kranenburg R, Molenaar D, Kuipers OP, et al. (2003) Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A 100: 1990-1995.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 1990-1995
-
-
Kleerebezem, M.1
Boekhorst, J.2
van Kranenburg, R.3
Molenaar, D.4
Kuipers, O.P.5
-
27
-
-
41149164162
-
The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features
-
Seedorf H, Fricke WF, Veith B, Bruggemann H, Liesegang H, et al. (2008) The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features. Proc Natl Acad Sci U S A 105: 2128-2133.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 2128-2133
-
-
Seedorf, H.1
Fricke, W.F.2
Veith, B.3
Bruggemann, H.4
Liesegang, H.5
-
28
-
-
40449133247
-
The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota
-
Kosaka T, Kato S, Shimoyama T, Ishii S, Abe T, et al. (2008) The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota. Genome Res 18: 442-448.
-
(2008)
Genome Res
, vol.18
, pp. 442-448
-
-
Kosaka, T.1
Kato, S.2
Shimoyama, T.3
Ishii, S.4
Abe, T.5
-
29
-
-
84908087962
-
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki
-
Florez LA, Roppel SF, Schmeisky AG, Lammers CR, Stulke J, (2009) A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. Database 2009.
-
(2009)
Database
, vol.2009
-
-
Florez, L.A.1
Roppel, S.F.2
Schmeisky, A.G.3
Lammers, C.R.4
Stulke, J.5
-
30
-
-
77749280244
-
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis
-
Lammers CR, Florez LA, Schmeisky AG, Roppel SF, Mader U, et al. (2010) Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis. Microbiology 156: 849-859.
-
(2010)
Microbiology
, vol.156
, pp. 849-859
-
-
Lammers, C.R.1
Florez, L.A.2
Schmeisky, A.G.3
Roppel, S.F.4
Mader, U.5
-
31
-
-
0028048566
-
Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification
-
Gundersen DE, Lee IM, Rehner SA, Davis RE, Kingsbury DT, (1994) Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification. J Bacteriol 176: 5244-5254.
-
(1994)
J Bacteriol
, vol.176
, pp. 5244-5254
-
-
Gundersen, D.E.1
Lee, I.M.2
Rehner, S.A.3
Davis, R.E.4
Kingsbury, D.T.5
-
32
-
-
0025180152
-
Pyrophosphatase is essential for growth of Escherichia coli
-
Chen J, Brevet A, Fromant M, Leveque F, Schmitter JM, et al. (1990) Pyrophosphatase is essential for growth of Escherichia coli. J Bacteriol 172: 5686-5689.
-
(1990)
J Bacteriol
, vol.172
, pp. 5686-5689
-
-
Chen, J.1
Brevet, A.2
Fromant, M.3
Leveque, F.4
Schmitter, J.M.5
-
33
-
-
77954678430
-
Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis
-
Hoelzle K, Peter S, Sidler M, Kramer MM, Wittenbrink MM, et al. (2010) Inorganic pyrophosphatase in uncultivable hemotrophic mycoplasmas: identification and properties of the enzyme from Mycoplasma suis. BMC Microbiol 10: 194.
-
(2010)
BMC Microbiol
, vol.10
, pp. 194
-
-
Hoelzle, K.1
Peter, S.2
Sidler, M.3
Kramer, M.M.4
Wittenbrink, M.M.5
-
34
-
-
58449125407
-
Genomics and evolution of heritable bacterial symbionts
-
Moran NA, McCutcheon JP, Nakabachi A, (2008) Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet 42: 165-190.
-
(2008)
Annu Rev Genet
, vol.42
, pp. 165-190
-
-
Moran, N.A.1
McCutcheon, J.P.2
Nakabachi, A.3
-
35
-
-
79961165989
-
Effector proteins that modulate plant-insect interactions
-
Hogenhout SA, Bos JI, (2011) Effector proteins that modulate plant-insect interactions. Curr Opin Plant Biol 14: 422-428.
-
(2011)
Curr Opin Plant Biol
, vol.14
, pp. 422-428
-
-
Hogenhout, S.A.1
Bos, J.I.2
-
36
-
-
80051758808
-
Diverse targets of phytoplasma effectors: from plant development to defense against insects
-
Sugio A, MacLean AM, Kingdom HN, Grieve VM, Manimekalai R, et al. (2011) Diverse targets of phytoplasma effectors: from plant development to defense against insects. Annu Rev Phytopathol 49: 175-195.
-
(2011)
Annu Rev Phytopathol
, vol.49
, pp. 175-195
-
-
Sugio, A.1
MacLean, A.M.2
Kingdom, H.N.3
Grieve, V.M.4
Manimekalai, R.5
-
37
-
-
58249097079
-
AY-WB phytoplasma secretes a protein that targets plant cell nuclei
-
Bai X, Correa VR, Toruno TY, Ammar el-D, Kamoun S, et al. (2009) AY-WB phytoplasma secretes a protein that targets plant cell nuclei. Mol Plant Microbe Interact 22: 18-30.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, pp. 18-30
-
-
Bai, X.1
Correa, V.R.2
Toruno, T.Y.3
Ammar, el-D.4
Kamoun, S.5
-
38
-
-
50149119906
-
Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution
-
Wei W, Davis RE, Jomantiene R, Zhao Y, (2008) Ancient, recurrent phage attacks and recombination shaped dynamic sequence-variable mosaics at the root of phytoplasma genome evolution. Proc Natl Acad Sci U S A 105: 11827-11832.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 11827-11832
-
-
Wei, W.1
Davis, R.E.2
Jomantiene, R.3
Zhao, Y.4
-
39
-
-
2342621395
-
NorM, an Erwinia amylovora multidrug efflux pump involved in in vitro competition with other epiphytic bacteria
-
Burse A, Weingart H, Ullrich MS, (2004) NorM, an Erwinia amylovora multidrug efflux pump involved in in vitro competition with other epiphytic bacteria. Appl Environ Microbiol 70: 693-703.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 693-703
-
-
Burse, A.1
Weingart, H.2
Ullrich, M.S.3
-
40
-
-
0031984440
-
Bacterial preprotein translocase: mechanism and conformational dynamics of a processive enzyme
-
Economou A, (1998) Bacterial preprotein translocase: mechanism and conformational dynamics of a processive enzyme. Mol Microbiol 27: 511-518.
-
(1998)
Mol Microbiol
, vol.27
, pp. 511-518
-
-
Economou, A.1
-
41
-
-
0033782994
-
Aminoacyl-tRNA synthesis
-
Ibba M, Soll D, (2000) Aminoacyl-tRNA synthesis. Annu Rev Biochem 69: 617-650.
-
(2000)
Annu Rev Biochem
, vol.69
, pp. 617-650
-
-
Ibba, M.1
Soll, D.2
-
42
-
-
41849117355
-
From one amino acid to another: tRNA-dependent amino acid biosynthesis
-
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, et al. (2008) From one amino acid to another: tRNA-dependent amino acid biosynthesis. Nucl Acids Res 36: 1813-1825.
-
(2008)
Nucl Acids Res
, vol.36
, pp. 1813-1825
-
-
Sheppard, K.1
Yuan, J.2
Hohn, M.J.3
Jester, B.4
Devine, K.M.5
-
43
-
-
6044238249
-
The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis
-
Minion FC, Lefkowitz EJ, Madsen ML, Cleary BJ, Swartzell SM, et al. (2004) The genome sequence of Mycoplasma hyopneumoniae strain 232, the agent of swine mycoplasmosis. J Bacteriol 186: 7123-7133.
-
(2004)
J Bacteriol
, vol.186
, pp. 7123-7133
-
-
Minion, F.C.1
Lefkowitz, E.J.2
Madsen, M.L.3
Cleary, B.J.4
Swartzell, S.M.5
-
44
-
-
0345668475
-
Essential Bacillus subtilis genes
-
Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, et al. (2003) Essential Bacillus subtilis genes. Proc Natl Acad Sci U S A 100: 4678-4683.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 4678-4683
-
-
Kobayashi, K.1
Ehrlich, S.D.2
Albertini, A.3
Amati, G.4
Andersen, K.K.5
-
45
-
-
0029813420
-
the minimal cell genome: "On being the right size"
-
Maniloff J, (1996) the minimal cell genome: "On being the right size". Proc Natl Acad Sci U S A 93: 10004-10006.
-
(1996)
Proc Natl Acad Sci U S A
, vol.93
, pp. 10004-10006
-
-
Maniloff, J.1
-
46
-
-
58149492429
-
Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes
-
Novichkov PS, Wolf YI, Dubchak I, Koonin EV, (2009) Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes. J Bacteriol 191: 65-73.
-
(2009)
J Bacteriol
, vol.191
, pp. 65-73
-
-
Novichkov, P.S.1
Wolf, Y.I.2
Dubchak, I.3
Koonin, E.V.4
-
47
-
-
68149175229
-
The consequences of genetic drift for bacterial genome complexity
-
Kuo CH, Moran NA, Ochman H, (2009) The consequences of genetic drift for bacterial genome complexity. Genome Res 19: 1450-1454.
-
(2009)
Genome Res
, vol.19
, pp. 1450-1454
-
-
Kuo, C.H.1
Moran, N.A.2
Ochman, H.3
-
48
-
-
0035479142
-
Deletional bias and the evolution of bacterial genomes
-
Mira A, Ochman H, Moran NA, (2001) Deletional bias and the evolution of bacterial genomes. Trends Genet 17: 589-596.
-
(2001)
Trends Genet
, vol.17
, pp. 589-596
-
-
Mira, A.1
Ochman, H.2
Moran, N.A.3
-
49
-
-
24744468387
-
Bacterial genome size reduction by experimental evolution
-
Nilsson AI, Koskiniemi S, Eriksson S, Kugelberg E, Hinton JC, et al. (2005) Bacterial genome size reduction by experimental evolution. Proc Natl Acad Sci U S A 102: 12112-12116.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12112-12116
-
-
Nilsson, A.I.1
Koskiniemi, S.2
Eriksson, S.3
Kugelberg, E.4
Hinton, J.C.5
-
50
-
-
70849114722
-
Deletional bias across the three domains of life
-
Kuo CH, Ochman H, (2009) Deletional bias across the three domains of life. Genome Biol Evol 1: 145-152.
-
(2009)
Genome Biol Evol
, vol.1
, pp. 145-152
-
-
Kuo, C.H.1
Ochman, H.2
-
51
-
-
77957343695
-
The extinction dynamics of bacterial pseudogenes
-
Kuo CH, Ochman H, (2010) The extinction dynamics of bacterial pseudogenes. PLoS Genet 6: e1001050.
-
(2010)
PLoS Genet
, vol.6
-
-
Kuo, C.H.1
Ochman, H.2
-
52
-
-
2942553890
-
Comparative genomics identifies genes shared by distantly related insect-transmitted plant pathogenic mollicutes
-
Bai X, Zhang J, Holford IR, Hogenhout SA, (2004) Comparative genomics identifies genes shared by distantly related insect-transmitted plant pathogenic mollicutes. FEMS Microbiol Lett 235: 249-258.
-
(2004)
FEMS Microbiol Lett
, vol.235
, pp. 249-258
-
-
Bai, X.1
Zhang, J.2
Holford, I.R.3
Hogenhout, S.A.4
-
53
-
-
27644593846
-
Phytoplasmas and their interactions with hosts
-
Christensen NM, Axelsen KB, Nicolaisen M, Schulz A, (2005) Phytoplasmas and their interactions with hosts. Trends Plant Sci 10: 526-535.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 526-535
-
-
Christensen, N.M.1
Axelsen, K.B.2
Nicolaisen, M.3
Schulz, A.4
-
54
-
-
80053583742
-
Phytoplasma effector SAP54 induces indeterminate leaf-like flower development in Arabidopsis plants
-
Maclean AM, Sugio A, Makarova OV, Findlay KC, Grieve VM, et al. (2011) Phytoplasma effector SAP54 induces indeterminate leaf-like flower development in Arabidopsis plants. Plant Physiol 157: 831-841.
-
(2011)
Plant Physiol
, vol.157
, pp. 831-841
-
-
Maclean, A.M.1
Sugio, A.2
Makarova, O.V.3
Findlay, K.C.4
Grieve, V.M.5
-
55
-
-
38549164691
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL, (2008) GenBank. Nucl Acids Res 36: D25-30.
-
(2008)
Nucl Acids Res
, vol.36
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
56
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
57
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, et al. (2009) BLAST+: architecture and applications. BMC Bioinformatics 10: 421.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
-
58
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ, Roos DS, (2003) OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
59
-
-
33745022802
-
Benchmarking ortholog identification methods using functional genomics data
-
Hulsen T, Huynen M, de Vlieg J, Groenen P, (2006) Benchmarking ortholog identification methods using functional genomics data. Genome Biol 7: R31.
-
(2006)
Genome Biol
, vol.7
-
-
Hulsen, T.1
Huynen, M.2
de Vlieg, J.3
Groenen, P.4
-
60
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res 12: 1611-1618.
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
-
61
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32: 1792-1797.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
62
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O, (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
63
-
-
0000122573
-
PHYLIP - Phylogeny inference package (version 3.2)
-
Felsenstein J, (1989) PHYLIP- Phylogeny inference package (version 3.2). Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
64
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
65
-
-
1342309210
-
Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
-
Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F, (2004) Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
-
(2004)
Bioinformatics
, vol.20
, pp. 407-415
-
-
Altekar, G.1
Dwarkadas, S.2
Huelsenbeck, J.P.3
Ronquist, F.4
-
66
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M, (2004) KAAS: an automatic genome annotation and pathway reconstruction server. Nucl Acids Res 35: W182-W185.
-
(2004)
Nucl Acids Res
, vol.35
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.C.4
Kanehisa, M.5
-
67
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucl Acids Res 28: 27-30.
-
(2000)
Nucl Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
68
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucl Acids Res 38: D355-360.
-
(2010)
Nucl Acids Res
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
69
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ, (1997) A genomic perspective on protein families. Science 278: 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
70
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
71
-
-
0346494849
-
MolliGen, a database dedicated to the comparative genomics of Mollicutes
-
Barre A, de Daruvar A, Blanchard A, (2004) MolliGen, a database dedicated to the comparative genomics of Mollicutes. Nucleic Acids Res 32: D307-310.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Barre, A.1
de Daruvar, A.2
Blanchard, A.3
-
72
-
-
75549090505
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, et al. (2010) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucl Acids Res 38 (suppl 1): D473-D479.
-
(2010)
Nucl Acids Res
, vol.38
, Issue.SUPPL. 1
-
-
Caspi, R.1
Altman, T.2
Dale, J.M.3
Dreher, K.4
Fulcher, C.A.5
|