-
1
-
-
68949156176
-
The dimeric proto-ribosome: Structural details and possible implications on the origin of life
-
Agmon I 2009 The dimeric proto-ribosome: Structural details and possible implications on the origin of life. Int. J. Mol. Sci. 10 2921-2934
-
(2009)
Int. J. Mol. Sci.
, vol.10
, pp. 2921-2934
-
-
Agmon, I.1
-
2
-
-
26844561217
-
Symmetry at the active site of the ribosome: Structural and functional implications
-
Agmon I, Bashan A, Zarivach R and Yonath A 2005 Symmetry at the active site of the ribosome: structural and functional implications. Biol. Chem. 386 833-844
-
(2005)
Biol. Chem.
, vol.386
, pp. 833-844
-
-
Agmon, I.1
Bashan, A.2
Zarivach, R.3
Yonath, A.4
-
3
-
-
0034637111
-
The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution
-
Ban N, Nissen P, Hansen J, Moore PB and Steitz TA 2000 The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289 905-920
-
(2000)
Science
, vol.289
, pp. 905-920
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Moore, P.B.4
Steitz, T.A.5
-
4
-
-
33745071762
-
Peptide bond formation does not involve acid-base catalysis by ribosomal residues
-
Bieling P, Beringer M, Adio S and Rodnina MV 2006 Peptide bond formation does not involve acid-base catalysis by ribosomal residues. Nat. Struct. Mol. Biol. 13 423-428
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 423-428
-
-
Bieling, P.1
Beringer, M.2
Adio, S.3
Rodnina, M.V.4
-
5
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, et al. 2002 The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BioMed Central Bioinformatics 3 2
-
(2002)
BioMed Central Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
-
6
-
-
0029402170
-
Histidine 229 in protein L2 is apparently essential for 50S peptidyl transferase activity
-
Cooperman BS, Wooten T, Romero DP and Traut RR 1995 Histidine 229 in protein L2 is apparently essential for 50S peptidyl transferase activity. Biochem. Cell Biol. 73 1087-1094
-
(1995)
Biochem. Cell Biol.
, vol.73
, pp. 1087-1094
-
-
Cooperman, B.S.1
Wooten, T.2
Romero, D.P.3
Traut, R.R.4
-
7
-
-
0014937223
-
Central dogma of molecular biology
-
Crick F 1970 Central dogma of molecular biology. Nature (London) 227 561-563
-
(1970)
Nature (London)
, vol.227
, pp. 561-563
-
-
Crick, F.1
-
9
-
-
13344279384
-
Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction
-
Doshi KJ, Cannone JJ, Cobaugh CW and Gutell RR 2004 Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction. BioMed Central Bioinformatics 5 105
-
(2004)
BioMed Central Bioinformatics
, vol.5
, pp. 105
-
-
Doshi, K.J.1
Cannone, J.J.2
Cobaugh, C.W.3
Gutell, R.R.4
-
10
-
-
85011936078
-
Ribosomal catalysis: The evolution of mechanistic concepts for peptide bond formation and peptidyl-tRNA hydrolysis
-
Erlacher MD and Polacek N 2008 Ribosomal catalysis: the evolution of mechanistic concepts for peptide bond formation and peptidyl-tRNA hydrolysis. RNA Biol. 5 5-12
-
(2008)
RNA Biol.
, vol.5
, pp. 5-12
-
-
Erlacher, M.D.1
Polacek, N.2
-
11
-
-
0000444955
-
Thermal copolymerization of amino acids to a product resembling protein
-
Fox SW and Harada K 1958 Thermal copolymerization of amino acids to a product resembling protein. Science 128 1214
-
(1958)
Science
, vol.128
, pp. 1214
-
-
Fox, S.W.1
Harada, K.2
-
12
-
-
0024959463
-
Aminoacylation of RNA minihelices with alanine
-
Francklyn C and Schimmel P 1989 Aminoacylation of RNA minihelices with alanine. Nature (London) 337 478-481
-
(1989)
Nature (London)
, vol.337
, pp. 478-481
-
-
Francklyn, C.1
Schimmel, P.2
-
13
-
-
0028213965
-
Efficient amino-acylation of resected RNA helices by class II aspartyl-tRNA synthetase dependent on a single nucleotide
-
Frugier M, Florentz C and Giegé R 1994 Efficient amino-acylation of resected RNA helices by class II aspartyl-tRNA synthetase dependent on a single nucleotide. EMBO J. 13 2219-2226
-
(1994)
EMBO J.
, vol.13
, pp. 2219-2226
-
-
Frugier, M.1
Florentz, C.2
Giegé, R.3
-
14
-
-
36849148382
-
The RNA world
-
Gilbert W 1986 The RNA world. Nature (London) 319 618
-
(1986)
Nature (London)
, vol.319
, pp. 618
-
-
Gilbert, W.1
-
15
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C, Gardiner K, Marsh T, Pace N and Altman S 1983 The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35 849-857
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
16
-
-
0029975504
-
Conserved motifs in prokaryotic and eukaryotic polypeptide release factors: Trna-protein mimicry hypothesis
-
Ito K, Ebihara K, Uno M and Nakamura Y 1996 Conserved motifs in prokaryotic and eukaryotic polypeptide release factors: tRNA-protein mimicry hypothesis. Proc. Natl. Acad. Sci. USA 93 5443-5448
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5443-5448
-
-
Ito, K.1
Ebihara, K.2
Uno, M.3
Nakamura, Y.4
-
17
-
-
0034628438
-
A tripeptide 'anticodon' deciphers stop codons in messenger RNA
-
Ito K, Uno M and Nakamura Y 2000 A tripeptide 'anticodon' deciphers stop codons in messenger RNA. Nature (London) 403 680-684
-
(2000)
Nature (London)
, vol.403
, pp. 680-684
-
-
Ito, K.1
Uno, M.2
Nakamura, Y.3
-
18
-
-
58149191272
-
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes
-
(Database-Issue)
-
Jühling F, Mörl M, Hartmann RK, Sprinzl M, Stadler PF and Pütz J 2009 tRNAdb 2009: compilation of tRNA sequences and tRNA genes. Nucleic Acids Res. 37(Database-Issue) 159-162
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 159-162
-
-
Jühling, F.1
Mörl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Pütz, J.6
-
19
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim SH, Suddath FL, Quigley GJ, McPherson A, Sussman JL, Wang AH, Seeman NC and Rich A 1974 Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 185 435-440
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
Wang, A.H.6
Seeman, N.C.7
Rich, A.8
-
20
-
-
34548395468
-
The ribosome in focus: New structures bring new insights
-
Korostelev A and Noller HF 2007 The ribosome in focus: new structures bring new insights. Trends Biochem. Sci. 32 434-441
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 434-441
-
-
Korostelev, A.1
Noller, H.F.2
-
21
-
-
0020417286
-
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena
-
Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschling DE and Cech TR 1982 Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell 31 147-157
-
(1982)
Cell
, vol.31
, pp. 147-157
-
-
Kruger, K.1
Grabowski, P.J.2
Zaug, A.J.3
Sands, J.4
Gottschling, D.E.5
Cech, T.R.6
-
22
-
-
0001163067
-
Small RNA oligonucleotide substrates for specific aminoacylations
-
(Washington, DC: ASM Press)
-
Martinis SA and Schimmel P 1997 Small RNA oligonucleotide substrates for specific aminoacylations; tRNA: Structure, biosynthesis, and function (Washington, DC: ASM Press) pp 349-370
-
(1997)
TRNA: Structure, Biosynthesis, and Function
, pp. 349-370
-
-
Martinis, S.A.1
Schimmel, P.2
-
23
-
-
0025811850
-
Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA
-
Moazed D and Noller HF 1991 Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA. Proc. Natl. Acad. Sci. USA 88 3725-3728
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 3725-3728
-
-
Moazed, D.1
Noller, H.F.2
-
25
-
-
0032909509
-
Atomic determinants for aminoacylation of RNA minihelices and relationship to genetic code
-
Musier-Forsyth K and Schimmel P 1999 Atomic determinants for aminoacylation of RNA minihelices and relationship to genetic code. Acc. Chem. Res. 32 368-375
-
(1999)
Acc. Chem. Res.
, vol.32
, pp. 368-375
-
-
Musier-Forsyth, K.1
Schimmel, P.2
-
26
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen P, Hansen J, Ban N, Moore PB and Steitz TA 2000 The structural basis of ribosome activity in peptide bond synthesis. Science 289 920-930
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
27
-
-
0003173754
-
On the origin of the ribosome: Coevolution of subdomains of tRNA and rRNA
-
(Plainview, NY: Cold Spring Harbor Laboratory Press)
-
Noller HF 1993 On the origin of the ribosome: coevolution of subdomains of tRNA and rRNA. The RNA World (Plainview, NY: Cold Spring Harbor Laboratory Press) pp 137-156
-
(1993)
The RNA World
, pp. 137-156
-
-
Noller, H.F.1
-
28
-
-
0026639881
-
Unusual resistance of peptidyl transferase to protein extraction procedures
-
Noller HF, Hoffarth V and Zimniak L 1992 Unusual resistance of peptidyl transferase to protein extraction procedures. Science 256 1416-1419
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
29
-
-
0014945679
-
Prebiotic synthesis of polypeptides by heterogeneous polycondensation of amino-acid adenylates
-
Paecht-Horowitz M, Berger J and Katchalsky A 1970 Prebiotic synthesis of polypeptides by heterogeneous polycondensation of amino-acid adenylates. Nature (London) 228 636-639
-
(1970)
Nature (London)
, vol.228
, pp. 636-639
-
-
Paecht-Horowitz, M.1
Berger, J.2
Katchalsky, A.3
-
30
-
-
43149083048
-
Ribosomal peptide-bond formation
-
Pech M and Nierhaus KH 2008 Ribosomal peptide-bond formation. Chem. Biol. 15 417-419
-
(2008)
Chem. Biol.
, vol.15
, pp. 417-419
-
-
Pech, M.1
Nierhaus, K.H.2
-
31
-
-
0035942753
-
Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide
-
Polacek N, Gaynor M, Yassin A and Mankin AS 2001 Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide. Nature (London) 411 498-501
-
(2001)
Nature (London)
, vol.411
, pp. 498-501
-
-
Polacek, N.1
Gaynor, M.2
Yassin, A.3
Mankin, A.S.4
-
32
-
-
49349091280
-
What we have learned from ribosome structures
-
Ramakrishnan V 2008 What we have learned from ribosome structures. Biochem. Soc. Trans. 36 567-574
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 567-574
-
-
Ramakrishnan, V.1
-
33
-
-
0016354122
-
Structure of yeast phenylalanine tRNA at 3Å resolution
-
Robertus JD, Ladner JE, Finch JT, Rhodes D, Brown RS, Clark BF and Klug A 1974 Structure of yeast phenylalanine tRNA at 3Å resolution. Nature (London) 250 546-551
-
(1974)
Nature (London)
, vol.250
, pp. 546-551
-
-
Robertus, J.D.1
Ladner, J.E.2
Finch, J.T.3
Rhodes, D.4
Brown, R.S.5
Clark, B.F.6
Klug, A.7
-
34
-
-
0033554392
-
Efficient 50S ribosome-catalyzed peptide bond synthesis with an aminoacyl minihelix
-
Sardesai NY, Green R and Schimmel P 1999 Efficient 50S ribosome-catalyzed peptide bond synthesis with an aminoacyl minihelix. Biochemistry 38 12080-12088
-
(1999)
Biochemistry
, vol.38
, pp. 12080-12088
-
-
Sardesai, N.Y.1
Green, R.2
Schimmel, P.3
-
35
-
-
0023061339
-
Aminoacyl tRNA synthetases: General scheme of structure-function relationships in the polypeptides and recognition of transfer RNAs
-
Schimmel P 1987 Aminoacyl tRNA synthetases: general scheme of structure-function relationships in the polypeptides and recognition of transfer RNAs. Annu. Rev. Biochem. 56 125-158
-
(1987)
Annu. Rev. Biochem.
, vol.56
, pp. 125-158
-
-
Schimmel, P.1
-
36
-
-
0027436686
-
An operational RNA code for amino acids and possible relationship to genetic code
-
Schimmel P, Giegé R, Moras D and Yokoyama S 1993 An operational RNA code for amino acids and possible relationship to genetic code. Proc. Natl. Acad. Sci. USA 90 8763-8768
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 8763-8768
-
-
Schimmel, P.1
Giegé, R.2
Moras, D.3
Yokoyama, S.4
-
37
-
-
0029009371
-
Transfer RNA: From minihelix to genetic code
-
Schimmel P and Ribas de Pouplana L 1995 Transfer RNA: from minihelix to genetic code. Cell 81 983-986
-
(1995)
Cell
, vol.81
, pp. 983-986
-
-
Schimmel, P.1
Ribas De Pouplana, L.2
-
39
-
-
0034268836
-
Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution
-
Schluenzen F, Tocilj A, Zarivach R, Harms J, Gluehmann M, Janell D, Bashan A, Bartels H, Agmon I, Franceschi F and Yonath A 2000 Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution. Cell 102 615-623
-
(2000)
Cell
, vol.102
, pp. 615-623
-
-
Schluenzen, F.1
Tocilj, A.2
Zarivach, R.3
Harms, J.4
Gluehmann, M.5
Janell, D.6
Bashan, A.7
Bartels, H.8
Agmon, I.9
Franceschi, F.10
Yonath, A.11
-
40
-
-
39749138785
-
A structural understanding of the dynamic ribosome machine
-
Steitz TA 2008 A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell. Biol. 9 242-253
-
(2008)
Nat. Rev. Mol. Cell. Biol.
, vol.9
, pp. 242-253
-
-
Steitz, T.A.1
-
41
-
-
0028054033
-
The role of the CCA sequence of tRNA in the peptidyl transfer reaction
-
Tamura K 1994 The role of the CCA sequence of tRNA in the peptidyl transfer reaction. FEBS Lett. 353 173-176
-
(1994)
FEBS Lett.
, vol.353
, pp. 173-176
-
-
Tamura, K.1
-
42
-
-
39949083745
-
Origin of amino acid homochirality: Relationship with the RNA world and origin of tRNA aminoacylation
-
Tamura K 2008 Origin of amino acid homochirality: relationship with the RNA world and origin of tRNA aminoacylation. Biosystems 92 91-98
-
(2008)
Biosystems
, vol.92
, pp. 91-98
-
-
Tamura, K.1
-
43
-
-
77949906855
-
Molecular handedness of life: Significance of RNA aminoacylation
-
Tamura K 2009 Molecular handedness of life: significance of RNA aminoacylation. J. Biosci. 34 991-994
-
(2009)
J. Biosci.
, vol.34
, pp. 991-994
-
-
Tamura, K.1
-
44
-
-
79952360248
-
Amino acid homochirality and the RNA world: Necessities for life on earth
-
Tamura K 2010 Amino acid homochirality and the RNA world: necessities for life on Earth. J. Cosmol. 5 883-889
-
(2010)
J. Cosmol.
, vol.5
, pp. 883-889
-
-
Tamura, K.1
-
45
-
-
79960796446
-
Molecular basis for chiral selection in RNA aminoacylation
-
Tamura K 2011 Molecular basis for chiral selection in RNA aminoacylation. Int. J. Mol. Sci. 12 4745-4757
-
(2011)
Int. J. Mol. Sci.
, vol.12
, pp. 4745-4757
-
-
Tamura, K.1
-
47
-
-
0035852620
-
Oligonucleotide-directed peptide synthesis in a ribosome-and ribozyme-free system
-
Tamura K and Schimmel P 2001 Oligonucleotide-directed peptide synthesis in a ribosome-and ribozyme-free system. Proc. Natl. Acad. Sci. USA 98 1393-1397
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1393-1397
-
-
Tamura, K.1
Schimmel, P.2
-
48
-
-
4344578505
-
Chiral-selective aminoacylation of an RNA minihelix
-
Tamura K and Schimmel P 2004 Chiral-selective aminoacylation of an RNA minihelix. Science 305 1253
-
(2004)
Science
, vol.305
, pp. 1253
-
-
Tamura, K.1
Schimmel, P.2
-
49
-
-
33748766632
-
Chiral-selective aminoacylation of an RNA minihelix: Mechanistic features and chiral suppression
-
Tamura K and Schimmel PR 2006 Chiral-selective aminoacylation of an RNA minihelix: mechanistic features and chiral suppression. Proc. Natl. Acad. Sci. USA 103 13750-13752
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 13750-13752
-
-
Tamura, K.1
Schimmel, P.R.2
-
50
-
-
0009561239
-
Origin of the cloverleaf shape of transfer RNA - The double-hairpin model: Implication for the role of tRNA intro and the long extra loop
-
Tanaka T and Kikuchi Y 2001 Origin of the cloverleaf shape of transfer RNA-the double-hairpin model: implication for the role of tRNA intro and the long extra loop. Viva Origino 29 134-142
-
(2001)
Viva Origino
, vol.29
, pp. 134-142
-
-
Tanaka, T.1
Kikuchi, Y.2
-
51
-
-
0035979232
-
Analysis of mutations at residues A2451 and G2447 of 23S rRNA in the peptidyltransferase active site of the 50S ribosomal subunit
-
Thompson J, Kim DF, O'Connor M, Lieberman KR, Bayfield MA, Gregory ST, Green R, Noller HF and Dahlberg AE 2001 Analysis of mutations at residues A2451 and G2447 of 23S rRNA in the peptidyltransferase active site of the 50S ribosomal subunit. Proc. Natl. Acad. Sci. USA 98 9002-9007
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9002-9007
-
-
Thompson, J.1
Kim, D.F.2
O'Connor, M.3
Lieberman, K.R.4
Bayfield, M.A.5
Gregory, S.T.6
Green, R.7
Noller, H.F.8
Dahlberg, A.E.9
-
52
-
-
0026444704
-
Groundworks for an evolutionary biochemistry: The iron-sulphur world
-
Wächtershäuser G 1992 Groundworks for an evolutionary biochemistry: the iron-sulphur world. Prog. Biophys. Mol. Biol. 58 85-201
-
(1992)
Prog. Biophys. Mol. Biol.
, vol.58
, pp. 85-201
-
-
Wächtershäuser, G.1
-
53
-
-
0017867269
-
The formation of peptides from the 2'(3')-glycyl ester of a nucleotide
-
Weber AL and Orgel LE 1978 The formation of peptides from the 2'(3')-glycyl ester of a nucleotide. J. Mol. Evol, 11 189-198
-
(1978)
J. Mol. Evol
, vol.11
, pp. 189-198
-
-
Weber, A.L.1
Orgel, L.E.2
-
54
-
-
0018525947
-
The formation of dipeptides from amino acids and the 2'(3')-glycyl ester of an adenylate
-
Weber AL and Orgel LE 1979 The formation of dipeptides from amino acids and the 2'(3')-glycyl ester of an adenylate. J. Mol. Evol. 13 185-192
-
(1979)
J. Mol. EVol.
, vol.13
, pp. 185-192
-
-
Weber, A.L.1
Orgel, L.E.2
-
55
-
-
0035808304
-
Localization of the protein L2 in the 50 S subunit and the 70 S E
-
Willumeit R, Forthmann S, Beckmann J, Diedrich G, Ratering R, Stuhrmann HB and Nierhaus KH 2001 Localization of the protein L2 in the 50 S subunit and the 70 S E. coli ribosome. J. Mol. Biol. 305 167-177
-
(2001)
Coli Ribosome. J. Mol. Biol.
, vol.305
, pp. 167-177
-
-
Willumeit, R.1
Forthmann, S.2
Beckmann, J.3
Diedrich, G.4
Ratering, R.5
Stuhrmann, H.B.6
Nierhaus, K.H.7
-
56
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T and Ramakrishnan V 2000 Structure of the 30S ribosomal subunit. Nature (London) 407 327-339
-
(2000)
Nature (London)
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
57
-
-
0030688863
-
Peptide bond formation by in vitro selected ribozymes
-
Zhang B and Cech TR 1997 Peptide bond formation by in vitro selected ribozymes. Nature (London) 390 96-100
-
(1997)
Nature (London)
, vol.390
, pp. 96-100
-
-
Zhang, B.1
Cech, T.R.2
|