Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

BMC Bioinformatics

Volumn 5, Issue , 2004, Pages

  Doshi, Kishore J ^a   Cannone, Jaime J ^a   Cobaugh, Christian W ^a   Gutell, Robin R ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE ANALYSIS; FREE ENERGY MINIMIZATION; FREE-ENERGY CALCULATIONS; PREDICTION ACCURACY; RNA SECONDARY STRUCTURE PREDICTION; SECONDARY AND TERTIARY STRUCTURES; SECONDARY STRUCTURES; STRUCTURE PREDICTION;

FORECASTING; FREE ENERGY; NUCLEOTIDES; PARAMETER ESTIMATION;

RNA;

NUCLEOTIDE DERIVATIVE; RIBOSOME RNA; RNA 16S; RNA 23S; RNA 5S; TRANSFER RNA; ARCHAEAL RNA; BACTERIAL RNA; CHLOROPLAST RNA; RNA; RNA, MITOCHONDRIAL;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ACCURACY; ANALYTICAL PARAMETERS; ARTICLE; BASE PAIRING; CALCULATION; COMPUTER PREDICTION; COMPUTER PROGRAM; CONTROLLED STUDY; ENERGY; ENZYME MECHANISM; GENETIC ALGORITHM; INTERMETHOD COMPARISON; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN SECONDARY STRUCTURE; RELIABILITY; RNA ANALYSIS; RNA SEQUENCE; RNA STRUCTURE; BIOLOGICAL MODEL; BIOLOGY; CHEMISTRY; COMPARATIVE STUDY; CONFORMATION; ENTROPY; EVALUATION STUDY; PREDICTIVE VALUE; PROCEDURES; STANDARDS; THERMODYNAMICS;

BASE SEQUENCE; COMPUTATIONAL BIOLOGY; ENTROPY; MODELS, GENETIC; NUCLEIC ACID CONFORMATION; PHYLOGENY; PREDICTIVE VALUE OF TESTS; RNA; RNA, ARCHAEAL; RNA, BACTERIAL; RNA, CHLOROPLAST; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; RNA, RIBOSOMAL, 5S; THERMODYNAMICS;

EID: 13344279384     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-5-105     Document Type: Article

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