메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

Variation in genomic islands contribute to genome plasticity in cupriavidus metallidurans

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; HYDROGEN; TOLUENE; BACTERIAL PROTEIN; METAL; SIGMA FACTOR;

EID: 84858711633     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-111     Document Type: Article
Times cited : (34)

References (50)
  • 1
    • 28644437016 scopus 로고    scopus 로고
    • A bacterial view of the periodic table: genes and proteins for toxic inorganic ions
    • 10.1007/s10295-005-0019-6, 16133099
    • Silver S, le Phung T. A bacterial view of the periodic table: genes and proteins for toxic inorganic ions. J Ind Microbiol Biotechnol 2005, 32:587-605. 10.1007/s10295-005-0019-6, 16133099.
    • (2005) J Ind Microbiol Biotechnol , vol.32 , pp. 587-605
    • Silver, S.1    le Phung, T.2
  • 2
    • 0034813331 scopus 로고    scopus 로고
    • Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp nov., Ralstonia metallidurans sp nov and Ralstonia basilensis Steinle et al. 1998 emend
    • 10.1099/00207713-51-5-1773, 11594608
    • Goris J, De Vos P, Coenye T, Hoste B, Janssens D, Brim H, Diels L, Mergeay M, Kersters K, Vandamme P. Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp nov., Ralstonia metallidurans sp nov and Ralstonia basilensis Steinle et al. 1998 emend. Int J Syst Evol Microbiol 2001, 51:1773-1782. 10.1099/00207713-51-5-1773, 11594608.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1773-1782
    • Goris, J.1    De Vos, P.2    Coenye, T.3    Hoste, B.4    Janssens, D.5    Brim, H.6    Diels, L.7    Mergeay, M.8    Kersters, K.9    Vandamme, P.10
  • 4
    • 0002256860 scopus 로고    scopus 로고
    • Bacteria adapted to industrial biotopes: the metal resistant Ralstoni
    • Washington D.C: ASM Press, Storz G, Hengge-Aronis R
    • Mergeay M. Bacteria adapted to industrial biotopes: the metal resistant Ralstoni. Bacterial Stress Responses 2000, 403-414. Washington D.C: ASM Press, Storz G, Hengge-Aronis R.
    • (2000) Bacterial Stress Responses , pp. 403-414
    • Mergeay, M.1
  • 5
    • 35048813675 scopus 로고    scopus 로고
    • Plasmids pMOL28 and pMOL30 of Cupriavidus metalliduran are specialized in the maximal viable response to heavy metals
    • 10.1128/JB.00375-07, 2168447, 17675385
    • Monchy S, Benotmane MA, Janssen P, Vallaeys T, Taghavi S, van der Lelie D, Mergeay M. Plasmids pMOL28 and pMOL30 of Cupriavidus metalliduran are specialized in the maximal viable response to heavy metals. J Bacteriol 2007, 189:7417-7425. 10.1128/JB.00375-07, 2168447, 17675385.
    • (2007) J Bacteriol , vol.189 , pp. 7417-7425
    • Monchy, S.1    Benotmane, M.A.2    Janssen, P.3    Vallaeys, T.4    Taghavi, S.5    van der Lelie, D.6    Mergeay, M.7
  • 6
    • 68449094932 scopus 로고    scopus 로고
    • Megaplasmids in Cupriavidus genus and metal resistance
    • Berlin: Springer, Schwartz E, [Steinbüchel A (Series Editor): Microbiology Monographs]
    • Mergeay M, Monchy S, Janssen P, Van Houdt R, Leys N. Megaplasmids in Cupriavidus genus and metal resistance. Microbial megaplasmids. Volume 11 2009, 209-238. Berlin: Springer, Schwartz E, [Steinbüchel A (Series Editor): Microbiology Monographs].
    • (2009) Microbial megaplasmids. Volume 11 , pp. 209-238
    • Mergeay, M.1    Monchy, S.2    Janssen, P.3    Van Houdt, R.4    Leys, N.5
  • 7
    • 83555165173 scopus 로고    scopus 로고
    • Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network
    • 10.1007/s10534-011-9473-y, 21706166
    • Monsieurs P, Moors H, Van Houdt R, Janssen PJ, Janssen A, Coninx I, Mergeay M, Leys N. Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network. Biometals 2011, 24:1133-1151. 10.1007/s10534-011-9473-y, 21706166.
    • (2011) Biometals , vol.24 , pp. 1133-1151
    • Monsieurs, P.1    Moors, H.2    Van Houdt, R.3    Janssen, P.J.4    Janssen, A.5    Coninx, I.6    Mergeay, M.7    Leys, N.8
  • 8
    • 77956398098 scopus 로고    scopus 로고
    • The complete genome sequence of Cupriavidus metalliduran strain CH34, a master survivalist in harsh and anthropogenic environments
    • 10.1371/journal.pone.0010433, 2864759, 20463976
    • Janssen PJ, Van Houdt R, Moors H, Monsieurs P, Morin N, Michaux A, Benotmane MA, Leys N, Vallaeys T, Lapidus A, et al. The complete genome sequence of Cupriavidus metalliduran strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One 2010, 5:e10433. 10.1371/journal.pone.0010433, 2864759, 20463976.
    • (2010) PLoS One , vol.5
    • Janssen, P.J.1    Van Houdt, R.2    Moors, H.3    Monsieurs, P.4    Morin, N.5    Michaux, A.6    Benotmane, M.A.7    Leys, N.8    Vallaeys, T.9    Lapidus, A.10
  • 9
    • 68449102953 scopus 로고    scopus 로고
    • New mobile genetic elements in Cupriavidus metalliduran CH34, their possible roles and occurrence in other bacteria
    • 10.1007/s10482-009-9345-4, 19390985
    • Van Houdt R, Monchy S, Leys N, Mergeay M. New mobile genetic elements in Cupriavidus metalliduran CH34, their possible roles and occurrence in other bacteria. Antonie Van Leeuwenhoek 2009, 96:205-226. 10.1007/s10482-009-9345-4, 19390985.
    • (2009) Antonie Van Leeuwenhoek , vol.96 , pp. 205-226
    • Van Houdt, R.1    Monchy, S.2    Leys, N.3    Mergeay, M.4
  • 10
    • 79954415222 scopus 로고    scopus 로고
    • Insertion sequence elements in Cupriavidus metalliduran CH34: Distribution and role in adaptation
    • 10.1016/j.plasmid.2010.12.006, 21185859
    • Mijnendonckx K, Provoost A, Monsieurs P, Leys N, Mergeay M, Mahillon J, Van Houdt R. Insertion sequence elements in Cupriavidus metalliduran CH34: Distribution and role in adaptation. Plasmid 2011, 65:193-203. 10.1016/j.plasmid.2010.12.006, 21185859.
    • (2011) Plasmid , vol.65 , pp. 193-203
    • Mijnendonckx, K.1    Provoost, A.2    Monsieurs, P.3    Leys, N.4    Mergeay, M.5    Mahillon, J.6    Van Houdt, R.7
  • 11
    • 72849128938 scopus 로고    scopus 로고
    • Novel Tn437-ICE like element in Ralstonia picketti and genome mining for comparative elements
    • 10.1186/1471-2180-9-242, 2789088, 19941653
    • Ryan MP, Pembroke JT, Adley CC. Novel Tn437-ICE like element in Ralstonia picketti and genome mining for comparative elements. BMC Microbiol 2009, 9:242. 10.1186/1471-2180-9-242, 2789088, 19941653.
    • (2009) BMC Microbiol , vol.9 , pp. 242
    • Ryan, M.P.1    Pembroke, J.T.2    Adley, C.C.3
  • 12
    • 0038018390 scopus 로고    scopus 로고
    • The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn437, a member of a new family of genomic islands related to IncP and Ti plasmids
    • 10.1128/AEM.69.8.4837-4845.2003, 169086, 12902278
    • Toussaint A, Merlin C, Monchy S, Benotmane MA, Leplae R, Mergeay M, Springael D. The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn437, a member of a new family of genomic islands related to IncP and Ti plasmids. Appl Environ Microbiol 2003, 69:4837-4845. 10.1128/AEM.69.8.4837-4845.2003, 169086, 12902278.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4837-4845
    • Toussaint, A.1    Merlin, C.2    Monchy, S.3    Benotmane, M.A.4    Leplae, R.5    Mergeay, M.6    Springael, D.7
  • 13
    • 0032999894 scopus 로고    scopus 로고
    • Amplified rDNA restriction analysis and further genotypic characterisation of metal-resistant soil bacteria and related facultative hydrogenotrophs
    • 10.1016/S0723-2020(99)80073-3, 10390877
    • Brim H, Heyndrickx M, de Vos P, Wilmotte A, Springael D, Schlegel HG, Mergeay M. Amplified rDNA restriction analysis and further genotypic characterisation of metal-resistant soil bacteria and related facultative hydrogenotrophs. Syst Appl Microbiol 1999, 22:258-268. 10.1016/S0723-2020(99)80073-3, 10390877.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 258-268
    • Brim, H.1    Heyndrickx, M.2    de Vos, P.3    Wilmotte, A.4    Springael, D.5    Schlegel, H.G.6    Mergeay, M.7
  • 14
    • 0025236782 scopus 로고
    • DNA probe-mediated detection of resistant bacteria from soils highly polluted by heavy metals
    • 184435, 16348196
    • Diels L, Mergeay M. DNA probe-mediated detection of resistant bacteria from soils highly polluted by heavy metals. Appl Environ Microbiol 1990, 56:1485-1491. 184435, 16348196.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1485-1491
    • Diels, L.1    Mergeay, M.2
  • 15
    • 0141788251 scopus 로고    scopus 로고
    • Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility
    • 10.1046/j.1462-2920.2003.00496.x, 14510851
    • La Duc MT, Nicholson W, Kern R, Venkateswaran K. Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility. Environ Microbiol 2003, 5:977-985. 10.1046/j.1462-2920.2003.00496.x, 14510851.
    • (2003) Environ Microbiol , vol.5 , pp. 977-985
    • La Duc, M.T.1    Nicholson, W.2    Kern, R.3    Venkateswaran, K.4
  • 16
    • 2342529622 scopus 로고    scopus 로고
    • Microbial monitoring of spacecraft and associated environments
    • 10.1007/s00248-003-1012-0, 14749906
    • La Duc MT, Kern R, Venkateswaran K. Microbial monitoring of spacecraft and associated environments. Microb Ecol 2004, 47:150-158. 10.1007/s00248-003-1012-0, 14749906.
    • (2004) Microb Ecol , vol.47 , pp. 150-158
    • La Duc, M.T.1    Kern, R.2    Venkateswaran, K.3
  • 17
    • 0035382565 scopus 로고    scopus 로고
    • Microbial contamination of spacecraft
    • Pierson DL. Microbial contamination of spacecraft. Gravit Space Biol Bull 2001, 14:1-6.
    • (2001) Gravit Space Biol Bull , vol.14 , pp. 1-6
    • Pierson, D.L.1
  • 18
    • 2342646696 scopus 로고    scopus 로고
    • Microbial characterization of free floating condensate aboard the Mir space station
    • 10.1007/s00248-003-1038-3, 14569419
    • Ott CM, Bruce RJ, Pierson DL. Microbial characterization of free floating condensate aboard the Mir space station. Microb Ecol 2004, 47:133-136. 10.1007/s00248-003-1038-3, 14569419.
    • (2004) Microb Ecol , vol.47 , pp. 133-136
    • Ott, C.M.1    Bruce, R.J.2    Pierson, D.L.3
  • 19
    • 2342430101 scopus 로고    scopus 로고
    • The effect of simulated microgravity on bacteria from the Mir space station
    • Baker PW, Leff L. The effect of simulated microgravity on bacteria from the Mir space station. Microgravity Sci Technol 2004, 15:35-41.
    • (2004) Microgravity Sci Technol , vol.15 , pp. 35-41
    • Baker, P.W.1    Leff, L.2
  • 20
    • 22144474067 scopus 로고    scopus 로고
    • Use of PCR analyses to define the distribution of Ralstoni species recovered from patients with cystic fibrosis
    • 10.1128/JCM.43.7.3463-3466.2005, 1169115, 16000479
    • Coenye T, Spilker T, Reik R, Vandamme P, Lipuma JJ. Use of PCR analyses to define the distribution of Ralstoni species recovered from patients with cystic fibrosis. J Clin Microbiol 2005, 43:3463-3466. 10.1128/JCM.43.7.3463-3466.2005, 1169115, 16000479.
    • (2005) J Clin Microbiol , vol.43 , pp. 3463-3466
    • Coenye, T.1    Spilker, T.2    Reik, R.3    Vandamme, P.4    Lipuma, J.J.5
  • 21
    • 79951493423 scopus 로고    scopus 로고
    • First case of invasive human infection caused by Cupriavidus metalliduran
    • 10.1128/JCM.01947-10, 3043494, 21106795
    • Langevin S, Vincelette J, Bekal S, Gaudreau C. First case of invasive human infection caused by Cupriavidus metalliduran. J Clin Microbiol 2011, 49:744-745. 10.1128/JCM.01947-10, 3043494, 21106795.
    • (2011) J Clin Microbiol , vol.49 , pp. 744-745
    • Langevin, S.1    Vincelette, J.2    Bekal, S.3    Gaudreau, C.4
  • 23
    • 0026004752 scopus 로고
    • High-level nickel resistance in Alcaligenes xylosoxydan 31A and Alcaligenes eutrophu KTO2
    • 183963, 16348590
    • Schmidt T, Stoppel RD, Schlegel HG. High-level nickel resistance in Alcaligenes xylosoxydan 31A and Alcaligenes eutrophu KTO2. Appl Environ Microbiol 1991, 57:3301-3309. 183963, 16348590.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 3301-3309
    • Schmidt, T.1    Stoppel, R.D.2    Schlegel, H.G.3
  • 24
    • 0017852917 scopus 로고
    • Extrachromosomal inheritance controlling resistance to cadmium, cobalt, copper and zinc ions: evidence from curing a Pseudomona
    • Mergeay M, Houba C, Gerits J. Extrachromosomal inheritance controlling resistance to cadmium, cobalt, copper and zinc ions: evidence from curing a Pseudomona. Arch Int Physiol Biochim Biophys 1978, 86:440-442.
    • (1978) Arch Int Physiol Biochim Biophys , vol.86 , pp. 440-442
    • Mergeay, M.1    Houba, C.2    Gerits, J.3
  • 25
    • 57649118679 scopus 로고    scopus 로고
    • Impact of assembly, testing and launch operations on the airborne bacterial diversity within a spacecraft assembly facility clean-room
    • Newcombe DA, La Duc MT, Vaishampayan P, Venkateswaran K. Impact of assembly, testing and launch operations on the airborne bacterial diversity within a spacecraft assembly facility clean-room. Int J Astrobiol 2008, 7:223-236.
    • (2008) Int J Astrobiol , vol.7 , pp. 223-236
    • Newcombe, D.A.1    La Duc, M.T.2    Vaishampayan, P.3    Venkateswaran, K.4
  • 27
    • 0024937730 scopus 로고
    • Nickel and cobalt resistance of various bacteria isolated from soil and highly polluted domestic and industrial wastes
    • Schmidt T, Schlegel HG. Nickel and cobalt resistance of various bacteria isolated from soil and highly polluted domestic and industrial wastes. FEMS Microbiol Lett 1989, 62:315-328.
    • (1989) FEMS Microbiol Lett , vol.62 , pp. 315-328
    • Schmidt, T.1    Schlegel, H.G.2
  • 28
    • 33947108811 scopus 로고    scopus 로고
    • Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginos
    • 10.1128/JB.01688-06, 1899365, 17194795
    • Klockgether J, Wurdemann D, Reva O, Wiehlmann L, Tummler B. Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginos. J Bacteriol 2007, 189:2443-2459. 10.1128/JB.01688-06, 1899365, 17194795.
    • (2007) J Bacteriol , vol.189 , pp. 2443-2459
    • Klockgether, J.1    Wurdemann, D.2    Reva, O.3    Wiehlmann, L.4    Tummler, B.5
  • 30
    • 0027962480 scopus 로고
    • Combined nickel-cobalt-cadmium resistance encoded by the nc locus of Alcaligenes xylosoxidan 31A
    • 197079, 7961470
    • Schmidt T, Schlegel HG. Combined nickel-cobalt-cadmium resistance encoded by the nc locus of Alcaligenes xylosoxidan 31A. J Bacteriol 1994, 176:7045-7054. 197079, 7961470.
    • (1994) J Bacteriol , vol.176 , pp. 7045-7054
    • Schmidt, T.1    Schlegel, H.G.2
  • 33
    • 70350146566 scopus 로고    scopus 로고
    • CzcP is a novel efflux system contributing to transition metal resistance in Cupriavidus metalliduran CH34
    • 10.1111/j.1365-2958.2009.06792.x, 19602147
    • Scherer J, Nies DH. CzcP is a novel efflux system contributing to transition metal resistance in Cupriavidus metalliduran CH34. Mol Microbiol 2009, 73:601-621. 10.1111/j.1365-2958.2009.06792.x, 19602147.
    • (2009) Mol Microbiol , vol.73 , pp. 601-621
    • Scherer, J.1    Nies, D.H.2
  • 34
    • 77958049691 scopus 로고    scopus 로고
    • Complex prokaryotic genome structure: rapid evolution of chromosome II
    • 10.1139/G10-046, 20924417
    • Bavishi A, Abhishek A, Lin L, Choudhary M. Complex prokaryotic genome structure: rapid evolution of chromosome II. Genome 2010, 53:675-687. 10.1139/G10-046, 20924417.
    • (2010) Genome , vol.53 , pp. 675-687
    • Bavishi, A.1    Abhishek, A.2    Lin, L.3    Choudhary, M.4
  • 35
    • 33744748269 scopus 로고    scopus 로고
    • Cupriavidus pinatubonensi sp. nov. and Cupriavidus lahari sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines
    • 10.1099/ijs.0.63922-0, 16627640
    • Sato Y, Nishihara H, Yoshida M, Watanabe M, Rondal JD, Concepcion RN, Ohta H. Cupriavidus pinatubonensi sp. nov. and Cupriavidus lahari sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines. Int J Syst Evol Microbiol 2006, 56:973-978. 10.1099/ijs.0.63922-0, 16627640.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 973-978
    • Sato, Y.1    Nishihara, H.2    Yoshida, M.3    Watanabe, M.4    Rondal, J.D.5    Concepcion, R.N.6    Ohta, H.7
  • 36
    • 33750074788 scopus 로고    scopus 로고
    • From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya
    • 10.1098/rstb.2006.1904, 1664677, 17008219
    • Wachtershauser G. From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya. Philos Trans R Soc Lond B Biol Sci 2006, 361:1787-1806. 10.1098/rstb.2006.1904, 1664677, 17008219.
    • (2006) Philos Trans R Soc Lond B Biol Sci , vol.361 , pp. 1787-1806
    • Wachtershauser, G.1
  • 38
    • 33947403196 scopus 로고    scopus 로고
    • Transposon Tn is widespread in diverse bacteria and forms genomic islands
    • 10.1128/JB.01536-06, 1855776, 17194796
    • Parks AR, Peters JE. Transposon Tn is widespread in diverse bacteria and forms genomic islands. J Bacteriol 2007, 189:2170-2173. 10.1128/JB.01536-06, 1855776, 17194796.
    • (2007) J Bacteriol , vol.189 , pp. 2170-2173
    • Parks, A.R.1    Peters, J.E.2
  • 39
    • 56449107747 scopus 로고    scopus 로고
    • Tn elements: engendering diversity from chromosomes to episomes
    • 10.1016/j.plasmid.2008.09.008, 2614081, 18951916
    • Parks AR, Peters JE. Tn elements: engendering diversity from chromosomes to episomes. Plasmid 2009, 61:1-14. 10.1016/j.plasmid.2008.09.008, 2614081, 18951916.
    • (2009) Plasmid , vol.61 , pp. 1-14
    • Parks, A.R.1    Peters, J.E.2
  • 40
    • 34250821713 scopus 로고    scopus 로고
    • Contribution of extracytoplasmic function sigma factors to transition metal homeostasis in Cupriavidus metalliduran strain CH34
    • 10.1159/000099644, 17587871
    • Grosse C, Friedrich S, Nies DH. Contribution of extracytoplasmic function sigma factors to transition metal homeostasis in Cupriavidus metalliduran strain CH34. J Mol Microbiol Biotechnol 2007, 12:227-240. 10.1159/000099644, 17587871.
    • (2007) J Mol Microbiol Biotechnol , vol.12 , pp. 227-240
    • Grosse, C.1    Friedrich, S.2    Nies, D.H.3
  • 41
    • 0029792315 scopus 로고    scopus 로고
    • Bacterial heavy metal resistance: New surprises
    • 10.1146/annurev.micro.50.1.753, 8905098
    • Silver S, Phung LT. Bacterial heavy metal resistance: New surprises. Annu Rev Microbiol 1996, 50:753-789. 10.1146/annurev.micro.50.1.753, 8905098.
    • (1996) Annu Rev Microbiol , vol.50 , pp. 753-789
    • Silver, S.1    Phung, L.T.2
  • 42
    • 33646000316 scopus 로고    scopus 로고
    • Co-selection of antibiotic and metal resistance
    • 10.1016/j.tim.2006.02.006, 16537105
    • Baker-Austin C, Wright MS, Stepanauskas R, McArthur JV. Co-selection of antibiotic and metal resistance. Trends Microbiol 2006, 14:176-182. 10.1016/j.tim.2006.02.006, 16537105.
    • (2006) Trends Microbiol , vol.14 , pp. 176-182
    • Baker-Austin, C.1    Wright, M.S.2    Stepanauskas, R.3    McArthur, J.V.4
  • 43
    • 0021925630 scopus 로고
    • Alcaligenes eutrophu CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals
    • 218993, 3884593
    • Mergeay M, Nies D, Schlegel HG, Gerits J, Charles P, Van Gijsegem F. Alcaligenes eutrophu CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. J Bacteriol 1985, 162:328-334. 218993, 3884593.
    • (1985) J Bacteriol , vol.162 , pp. 328-334
    • Mergeay, M.1    Nies, D.2    Schlegel, H.G.3    Gerits, J.4    Charles, P.5    Van Gijsegem, F.6
  • 44
    • 0032994539 scopus 로고    scopus 로고
    • Quantification of bacterial lead resistance via activity assays
    • 10.1016/S0167-7012(99)00032-9, 10395460
    • Konopka A, Zakharova T. Quantification of bacterial lead resistance via activity assays. J Microbiol Methods 1999, 37:17-22. 10.1016/S0167-7012(99)00032-9, 10395460.
    • (1999) J Microbiol Methods , vol.37 , pp. 17-22
    • Konopka, A.1    Zakharova, T.2
  • 45
    • 39549100814 scopus 로고    scopus 로고
    • Detection of large plasmids from the Bacillus cereu group
    • 10.1016/j.plasmid.2007.11.005, 18179822
    • Andrup L, Barfod KK, Jensen GB, Smidt L. Detection of large plasmids from the Bacillus cereu group. Plasmid 2008, 59:139-143. 10.1016/j.plasmid.2007.11.005, 18179822.
    • (2008) Plasmid , vol.59 , pp. 139-143
    • Andrup, L.1    Barfod, K.K.2    Jensen, G.B.3    Smidt, L.4
  • 46
    • 33644872577 scopus 로고    scopus 로고
    • Limma: linear models for microarray data
    • New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W
    • Smyth GK. Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions using R and Bioconductor 2005, 397-420. New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W.
    • (2005) Bioinformatics and Computational Biology Solutions using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 47
    • 35748949257 scopus 로고    scopus 로고
    • A comparison of background correction methods for two-colour microarrays
    • 10.1093/bioinformatics/btm412, 17720982
    • Ritchie ME, Silver J, Oshlack A, Holmes M, Diyagama D, Holloway A, Smyth GK. A comparison of background correction methods for two-colour microarrays. Bioinformatics 2007, 23:2700-2707. 10.1093/bioinformatics/btm412, 17720982.
    • (2007) Bioinformatics , vol.23 , pp. 2700-2707
    • Ritchie, M.E.1    Silver, J.2    Oshlack, A.3    Holmes, M.4    Diyagama, D.5    Holloway, A.6    Smyth, G.K.7
  • 48
    • 0242333835 scopus 로고    scopus 로고
    • Normalization of cDNA microarray data
    • 10.1016/S1046-2023(03)00155-5, 14597310
    • Smyth GK, Speed T. Normalization of cDNA microarray data. Methods 2003, 31:265-273. 10.1016/S1046-2023(03)00155-5, 14597310.
    • (2003) Methods , vol.31 , pp. 265-273
    • Smyth, G.K.1    Speed, T.2
  • 49
    • 33745612095 scopus 로고    scopus 로고
    • Pvclust: an R package for assessing the uncertainty in hierarchical clustering
    • 10.1093/bioinformatics/btl117, 16595560
    • Suzuki R, Shimodaira H. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 2006, 22:1540-1542. 10.1093/bioinformatics/btl117, 16595560.
    • (2006) Bioinformatics , vol.22 , pp. 1540-1542
    • Suzuki, R.1    Shimodaira, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.